Phylogenetic relationship and genetic diversity of Turkish peanut viruses

Author(s):  
Ali Karanfil
2001 ◽  
Vol 1 (3) ◽  
pp. 213-220 ◽  
Author(s):  
A GACSER ◽  
Z HAMARI ◽  
I PFEIFFER ◽  
J VARGA ◽  
F KEVEI ◽  
...  

2016 ◽  
Vol 91 (2) ◽  
Author(s):  
Nicole Hackenbrack ◽  
Matthew B. Rogers ◽  
Robert E. Ashley ◽  
M. Kevin Keel ◽  
Steven V. Kubiski ◽  
...  

ABSTRACT Since the first description of adenoviruses in bats in 2006, a number of micro- and megabat species in Europe, Africa, and Asia have been shown to carry a wide diversity of adenoviruses. Here, we report on the evolutionary, biological, and structural characterization of a novel bat adenovirus (BtAdV) recovered from a Rafinesque's big-eared bat (Corynorhinus rafinesquii) in Kentucky, USA, which is the first adenovirus isolated from North American bats. This virus (BtAdV 250-A) exhibits a close phylogenetic relationship with Canine mastadenovirus A (CAdV A), as previously observed with other BtAdVs. To further investigate the relationships between BtAdVs and CAdVs, we conducted mass spectrometric analysis and single-particle cryo-electron microscopy reconstructions of the BtAdV 250-A capsid and also analyzed the in vitro host ranges of both viruses. Our results demonstrate that BtAdV 250-A represents a new mastadenovirus species that, in contrast to CAdV, has a unique capsid morphology that contains more prominent extensions of protein IX and can replicate efficiently in a phylogenetically diverse range of species. These findings, in addition to the recognition that both the genetic diversity of BtAdVs and the number of different bat species from disparate geographic regions infected with BtAdVs appears to be extensive, tentatively suggest that bats may have served as a potential reservoir for the cross-species transfer of adenoviruses to other hosts, as theorized for CAdV. IMPORTANCE Although many adenoviruses are host specific and likely codiverged with their hosts over millions of years, other adenoviruses appear to have emerged through successful cross-species transmission events on more recent time scales. The wide geographic distribution and genetic diversity of adenoviruses in bats and their close phylogenetic relationship to Canine mastadenovirus A (CAdV A) has raised important questions about how CAdV A, and possibly other mammalian adenoviruses, may have emerged. Although most adenoviruses tend to cause limited disease in their natural hosts, CAdV A is unusual in that it may cause high morbidity and sometimes fatal infections in immunocompetent hosts and is thus an important pathogen of carnivores. Here, we performed a comparative evolutionary and structural study of representative bat and canine adenoviruses to better understand the relationship between these two viral groups.


2008 ◽  
Vol 10 (1) ◽  
pp. 79-85 ◽  
Author(s):  
M. L. Wang ◽  
J. A. Mosjidis ◽  
J. B. Morris ◽  
Z. B. Chen ◽  
N. A. Barkley ◽  
...  

Gene ◽  
2012 ◽  
Vol 506 (2) ◽  
pp. 400-403 ◽  
Author(s):  
Ge Ding ◽  
Daizhen Zhang ◽  
Yanqiu Yu ◽  
Lingling Zhao ◽  
Beibei Zhang

2017 ◽  
pp. 45-58
Author(s):  
ZAKIR ULLAH

A total of 60 genotypes of Brassica campestris (L) germplasm were acquired from National Research Centre (NARC) Islamabad, Pakistan for the evaluation of genetic diversity using the morphological characters and SDS-PAGE analysis. These genotypes were grown-up in Plant Garden Department of plant sciences, University of Malakand, Khyber Pukhtunkhwa, Pakistan. For the assessment of genetic diversity total of 18 morphological traits were scored and their phylogenetic relationship were plot through cluster diagram. For the estimation of genetic diversity, we used the most influential technique SDS PAGE. We observed six loci (bands) from the collected genotypes; locus-1 (band-1) contained 100% bands of protein and obvious as monomorphic locus while loci i.e. 2,3,4,5 and 6 showed 28%, 42%, 36%, 56% and 25%, respectively variation and were polymorphic. The inter species locus influence toward genetic assortment (LCTGA) was 83.33% in the attained genotypes. Profiling through SDS PAGE based on two-way cluster plottingresolved effectively the collected genotype into 4 cluster. We consider that this work provides a baseline for the understanding genetic diversity in the common crops used in Pakistan and warrants further investigation in this newly evolving field of study.


2016 ◽  
Vol 4 (9) ◽  
pp. 462-467 ◽  
Author(s):  
Heba Abdou Basha ◽  
Walaa Slouma Hamouda Abd el Naby ◽  
Hanim Shabaan Mohammed Heikal

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