Improvement of laccase activity by silencing PacC in Ganoderma lucidum

Author(s):  
Jing Zhu ◽  
Shuqi Song ◽  
Lindan Lian ◽  
Liang Shi ◽  
Ang Ren ◽  
...  
2021 ◽  
Author(s):  
Mingwen Zhao ◽  
Jing Zhu ◽  
Shuqi Song ◽  
Lindan Lian ◽  
Liang Shi ◽  
...  

Abstract Ganoderma lucidum is a representative white-rot fungus that has great potential to degrade lignocellulose biomass. Laccase is recognized as a class of the most important lignin-degrading enzymes in G. lucidum. However, the comprehensive regulatory mechanisms of laccase are still lacking. Based on the genome sequence of G. lucidum, 15 laccase genes were identified and their encoding proteins were analyzed in this study. All of the laccase proteins are predicted to be multicopper oxidases with conserved copper-binding domains. Most laccase proteins were secreted enzymes in addition to Lac14 in which the signal peptide could not be predicted. The activity of all laccases showed the highest level at pH 3.0 or pH 7.0, with total laccase activity of approximately 200 U/mg protein. Silencing PacC resulted in a 5.2 fold increase in laccase activity compared with WT. Five laccase genes (lac1, lac6, lac9, lac10 and lac14) showed an increased transcription levels (approximately 1.5-5.6 fold) in the PacC-silenced strains versus that in WT, while other laccase genes were downregulated or unchanged. The extracellular pH value was about 3.1, which was more acidic in the PacC-silenced strains than in the WT (pH 3.5). Moreover, maintaining the fermentation pH resulted in a downregulation of laccase activity which is induced by silencing PacC Our findings indicate that in addition to its function in acidification of environmental pH, PacC plays an important role in regulating laccase activity in fungi.


2018 ◽  
Author(s):  
Xincong Kang ◽  
Yuewen Chen ◽  
Sien Yan ◽  
Luman Zeng ◽  
Xuehui Liu ◽  
...  

Background: Laccases, copper-based polyphenol oxidases, played vital roles in lignin and humus degradation as well as fruiting body formation and stress response. Sixteen putative laccase genes (Lacc1-Lacc16) were reported in the genome of white-rot fungus Ganoderma lucidum. Members in this multi-gene family usually had close inter-relationships and may vary in the roles contributing to functions. Identifying the interactions among multiple genes and thus the conjoined consequence to an activity was essential for systematically unraveling the molecular mechanisms of laccase and improving laccase activity. Methods: In this study, multivariate statistical analysis was applied to track the relationship between thetranscriptional level of laccase genes and the total enzymatic activities. We outlined and compared the interaction networks among the transcriptional levels of 16 laccase genes and associations with the total enzymatic activities with or without copper ion (Cu 2+ ). Results: A multi-gene interaction network among the sixteen genes and laccase activity was constructed to figure out the changes induced by Cu 2+ . The interaction network showed that the enzyme activity was the result of interactions among genes, and these interactions might vary with the presence of Cu 2+ , subsequently leading to the alteration of enzyme activity. Some genes always kept relation with enzyme activity (positive or negative, Lacc13, Lacc10), some were irrelevant (Lacc1, Lacc6), while another some were inconsistent (Lacc3, Lacc8, Lacc14 and Lacc15). Discussion: Network-based methods were applied to identify key functional genes and to outline associations among genes and phenotype in laccase multi-gene family. This is an exploratory strategy to describe the transcriptional complexity of laccase and its relevant responses to Cu 2+ stress. The identified key functional genes associated with laccase activity (e.g. Lacc10, Lacc13) and the associations among genes and activity will benefit for the regulation of enzyme activity.


2018 ◽  
Author(s):  
Xincong Kang ◽  
Yuewen Chen ◽  
Sien Yan ◽  
Luman Zeng ◽  
Xuehui Liu ◽  
...  

Background: Laccases, copper-based polyphenol oxidases, played vital roles in lignin and humus degradation as well as fruiting body formation and stress response. Sixteen putative laccase genes (Lacc1-Lacc16) were reported in the genome of white-rot fungus Ganoderma lucidum. Members in this multi-gene family usually had close inter-relationships and may vary in the roles contributing to functions. Identifying the interactions among multiple genes and thus the conjoined consequence to an activity was essential for systematically unraveling the molecular mechanisms of laccase and improving laccase activity. Methods: In this study, multivariate statistical analysis was applied to track the relationship between thetranscriptional level of laccase genes and the total enzymatic activities. We outlined and compared the interaction networks among the transcriptional levels of 16 laccase genes and associations with the total enzymatic activities with or without copper ion (Cu 2+ ). Results: A multi-gene interaction network among the sixteen genes and laccase activity was constructed to figure out the changes induced by Cu 2+ . The interaction network showed that the enzyme activity was the result of interactions among genes, and these interactions might vary with the presence of Cu 2+ , subsequently leading to the alteration of enzyme activity. Some genes always kept relation with enzyme activity (positive or negative, Lacc13, Lacc10), some were irrelevant (Lacc1, Lacc6), while another some were inconsistent (Lacc3, Lacc8, Lacc14 and Lacc15). Discussion: Network-based methods were applied to identify key functional genes and to outline associations among genes and phenotype in laccase multi-gene family. This is an exploratory strategy to describe the transcriptional complexity of laccase and its relevant responses to Cu 2+ stress. The identified key functional genes associated with laccase activity (e.g. Lacc10, Lacc13) and the associations among genes and activity will benefit for the regulation of enzyme activity.


1999 ◽  
Vol 65 (12) ◽  
pp. 5307-5313 ◽  
Author(s):  
Trevor M. D’Souza ◽  
Carlos S. Merritt ◽  
C. Adinarayana Reddy

ABSTRACT Ganoderma lucidum, a white rot basidiomycete widely distributed worldwide, was studied for the production of the lignin-modifying enzymes laccase, manganese-dependent peroxidase (MnP), and lignin peroxidase (LiP). Laccase levels observed in high-nitrogen (HN; 24 mM N) shaken cultures were much greater than those seen in low-nitrogen (2.4 mM N), malt extract, or wood-grown cultures and those reported for most other white rot fungi to date. Laccase production was readily seen in cultures grown with pine or poplar (100-mesh-size ground wood) as the sole carbon and energy source. Cultures containing both pine and poplar showed 5- to 10-fold-higher levels of laccase than cultures containing pine or poplar alone. Since syringyl units are structural components important in poplar lignin and other hardwoods but much less so in pine lignin and other softwoods, pine cultures were supplemented with syringic acid, and this resulted in laccase levels comparable to those seen in pine-plus-poplar cultures. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis of concentrated extracellular culture fluid from HN cultures showed two laccase activity bands (M r of 40,000 and 66,000), whereas isoelectric focusing revealed five major laccase activity bands with estimated pIs of 3.0, 4.25, 4.5, 4.8, and 5.1. Low levels of MnP activity (∼100 U/liter) were detected in poplar-grown cultures but not in cultures grown with pine, with pine plus syringic acid, or in HN medium. No LiP activity was seen in any of the media tested; however, probing the genomic DNA with the LiP cDNA (CLG4) from the white rot fungus Phanerochaete chrysosporium showed distinct hybridization bands suggesting the presence oflip-like sequences in G. lucidum.


Fermentation ◽  
2021 ◽  
Vol 7 (3) ◽  
pp. 157
Author(s):  
Galina Makarenkova ◽  
Valda Balode ◽  
Dzintra Zala ◽  
Elina Azena ◽  
Alexander Rapoport ◽  
...  

Lentinula edodes 3565 and Ganoderma lucidum 9621 were compared for their ability to produce lignocellulolytic enzymes in submerged (SM) and surface liquid (SL) fermentation of hydrolysed colza straw lignin waste that remained after the production of furfural and bioethanol (CS lignin). Application of cultivated mushrooms to dispose of pretreated colza straw agricultural waste is an approach to decrease the quantity of residual lignin while simultaneously obtaining active substances, e.g., the ligninolytic enzyme complex from mycelium. The effect of adding CS lignin to culture media on the yield of L. edodes and G. lucidum mycelium and extracellular laccase activity was studied. It was revealed that the mycelial growth of G. lucidum on solid media was significantly improved by adding CS lignin. Laccase activity during SL cultivation of L. edodes on medium with CS lignin gradually increased over the experiment starting on day 21 and peaked at 520 U/mL on day 28. G. lucidum expressed the maximum laccase activity, 540 U/mL, during the first 14 days of mycelium SM cultivation. Extracellular laccase activity was enhanced about 35- to 40-fold at cultivation of L. edodes and about 10- to 15-fold in the case of G. lucidum by supplementing liquid culture media with CS lignin.


2005 ◽  
Vol 7 (1-2) ◽  
pp. 263-280 ◽  
Author(s):  
Siu Wai Chiu ◽  
Vivien Wing Yan Luk ◽  
Stephen Yu ◽  
Peggy Lee ◽  
Natalie Wai ◽  
...  

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