Genome-Wide Identification and Functional Prediction of Long Non-coding RNAs in the Genesis of Populus euphratica Oliv. Heteromorphic Leaves

2020 ◽  
Vol 63 (2) ◽  
pp. 131-140
Author(s):  
Zhongzhong Guo ◽  
Shaowei Qin ◽  
Cailin Li ◽  
Lianghong Bao ◽  
Weiwei Yan ◽  
...  
Keyword(s):  
Populus Euphratica ◽  
Functional Prediction ◽  
Genome Wide ◽  
Non Coding Rnas ◽  
Heteromorphic Leaves ◽  
Populus Euphratica Oliv

scholarly journals Identification and functional prediction of circRNAs in Populus Euphratica Oliv. heteromorphic leaves

Genomics ◽  
2020 ◽  
Vol 112 (1) ◽  
pp. 92-98 ◽  
Author(s):  
Cailin Li ◽  
Shaowei Qin ◽  
Lianghong Bao ◽  
Zhongzhong Guo ◽  
Lifeng Zhao
Keyword(s):  
Populus Euphratica ◽  
Functional Prediction ◽  
Heteromorphic Leaves ◽  
Populus Euphratica Oliv

Genome-wide identification, functional prediction and expression profiling of long non-coding RNAs in Camelina sativa

2018 ◽  
Vol 86 (1) ◽  
pp. 49-63 ◽  
Author(s):  
Saminathan Subburaj ◽  
Yongsam Jeon ◽  
Luhua Tu ◽  
Yong-Tae Jin ◽  
Shipra Kumari ◽  
...  
Keyword(s):  
Expression Profiling ◽  
Camelina Sativa ◽  
Functional Prediction ◽  
Genome Wide ◽  
Non Coding Rnas

Genome wide identification and functional prediction of long non-coding RNAs in Brassica rapa

2016 ◽  
Vol 38 (6) ◽  
pp. 547-555 ◽  
Author(s):  
Parameswari Paul ◽  
Vignesh Dhandapani ◽  
Su Ryun Choi ◽  
Yong Pyo Lim
Keyword(s):  
Brassica Rapa ◽  
Functional Prediction ◽  
Genome Wide ◽  
Non Coding Rnas

scholarly journals Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus

PLoS ONE ◽  
2016 ◽  
Vol 11 (7) ◽  
pp. e0158784 ◽  
Author(s):  
Raj Kumar Joshi ◽  
Swati Megha ◽  
Urmila Basu ◽  
Muhammad H. Rahman ◽  
Nat N. V. Kav
Keyword(s):  
Brassica Napus ◽  
Sclerotinia Sclerotiorum ◽  
Functional Prediction ◽  
Genome Wide ◽  
Non Coding Rnas

scholarly journals Genome-wide analysis of RNAs associated with Populus euphratica Oliv. heterophyll morphogenesis

2018 ◽  
Vol 8 (1) ◽  
Author(s):  
Shao-Wei Qin ◽  
Ren-Jun Jiang ◽  
Na Zhang ◽  
Zhan-Wen Liu ◽  
Cai-Lin Li ◽  
...  
Keyword(s):  
Populus Euphratica ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Populus Euphratica Oliv

scholarly journals Genome-wide analysis and functional prediction of long non-coding RNAs in mouse uterus during the implantation window

Oncotarget ◽  
2017 ◽  
Vol 8 (48) ◽  
pp. 84360-84372 ◽  
Author(s):  
Qi Wang ◽  
Nan Wang ◽  
Rui Cai ◽  
Fan Zhao ◽  
Yongjie Xiong ◽  
...  
Keyword(s):  
Functional Prediction ◽  
Mouse Uterus ◽  
Genome Wide Analysis ◽  
Implantation Window ◽  
Genome Wide ◽  
Non Coding Rnas

scholarly journals Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize (Zea mays L.)

BMC Genomics ◽  
2016 ◽  
Vol 17 (1) ◽  
Author(s):  
Yuanda Lv ◽  
Zhikai Liang ◽  
Min Ge ◽  
Weicong Qi ◽  
Tifu Zhang ◽  
...  
Keyword(s):  
Zea Mays ◽  
Zea Mays L ◽  
Functional Prediction ◽  
Genome Wide ◽  
Non Coding Rnas

scholarly journals Regulatory networks of circRNAs related to transcription factors in Populus euphratica Oliv. heteromorphic leaves

2019 ◽  
Vol 39 (12) ◽  
Author(s):  
Lianghong Bao ◽  
Shaowei Qin ◽  
CaiLin Li ◽  
Zhongzhong Guo ◽  
Lifeng Zhao
Keyword(s):  
Transcription Factors ◽  
Leaf Development ◽  
Regulatory Networks ◽  
Target Genes ◽  
Expression Profiles ◽  
Populus Euphratica ◽  
Circular Rnas ◽  
Leaf Morphogenesis ◽  
Heteromorphic Leaves ◽  
Populus Euphratica Oliv

Abstract Circular RNAs (circRNAs) are a novel class of non-coding RNAs that are characterized by a covalently closed circular structure. They have been widely found in Populus euphratica Oliv. heteromorphic leaves (P. hl). To study the role of circRNAs related to transcription factors (TFs) in the morphogenesis of P. hl, the expression profiles of circRNAs in linear, lanceolate, ovate, and broad-ovate leaves of P. euphratica were elucidated by strand-specific sequencing. We identified and characterized 22 circRNAs related to TFs in P. hl at the four developmental stages. Using the competing endogenous RNAs hypothesis as a guide, we constructed circRNA–miRNA–TF mRNA regulatory networks, which indicated that circRNAs antagonized microRNAs (miRNAs), thereby influencing the expression of the miRNA target genes and playing a significant role in transcriptional regulation. Gene ontology annotation of the target TF genes predicted that these circRNAs were associated mainly with the regulation of leaf development, leaf morphogenesis, signal transduction, and response to abiotic stress. These findings implied that the circRNAs affected the size and number of cells in P. hl by regulating the expression of TF mRNAs. Our results provide a basis for further studies of leaf development in poplar trees.

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