scholarly journals Genome-wide identification and functional analysis of the cyclic nucleotide-gated channel gene family in Chinese cabbage

3 Biotech ◽  
2019 ◽  
Vol 9 (3) ◽  
Author(s):  
Qingqing Li ◽  
Siqiang Yang ◽  
Jie Ren ◽  
Xueling Ye ◽  
Xin jiang ◽  
...  
Keyword(s):  
Functional Analysis ◽  
Gene Family ◽  
Chinese Cabbage ◽  
Cyclic Nucleotide ◽  
Channel Gene ◽  
Genome Wide ◽  
Gated Channel

scholarly journals Genome-wide identification and analysis of the CNGC gene family in maize

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5816 ◽  
Author(s):  
Lidong Hao ◽  
Xiuli Qiao
Keyword(s):  
Gene Family ◽  
Expression Profiles ◽  
Gene Families ◽  
Regulatory Elements ◽  
Vital Role ◽  
Signal Pathways ◽  
Cis Acting ◽  
Genome Wide ◽  
Gramineous Plant ◽  
Gated Channel

As one of the non-selective cation channel gene families, the cyclic nucleotide-gated channel (CNGC) gene family plays a vital role in plant physiological processes that are related to signal pathways, plant development, and environmental stresses. However, genome-wide identification and analysis of the CNGC gene family in maize has not yet been undertaken. In the present study, twelve ZmCNGC genes were identified in the maize genome, which were unevenly distributed on chromosomes 1, 2, 4, 5, 6, 7, and 8. They were classified into five major groups: Groups I, II, III, IVa, and IVb. Phylogenetic analysis showed that gramineous plant CNGC genes expanded unequally during evolution. Group IV CNGC genes emerged first, whereas Groups I and II appeared later. Prediction analysis of cis-acting regulatory elements showed that 137 putative cis-elements were related to hormone-response, abiotic stress, and organ development. Furthermore, 120 protein pairs were predicted to interact with the 12 ZmCNGC proteins and other maize proteins. The expression profiles of the ZmCNGC genes were expressed in tissue-specific patterns. These results provide important information that will increase our understanding of the CNGC gene family in maize and other plants.

Cyclic nucleotide gated channel genes (CNGCs) in Rosaceae: genome-wide annotation, evolution and the roles on Valsa canker resistance

2021 ◽  
Author(s):  
Xia Mao ◽  
Chao Wang ◽  
Qianqian Lv ◽  
Yuzhen Tian ◽  
Dongdong Wang ◽  
...  
Keyword(s):  
Cyclic Nucleotide ◽  
Genome Wide ◽  
Gated Channel ◽  
Valsa Canker

scholarly journals Genome-wide characterization, expression and functional analysis of CLV3/ESR gene family in tomato

BMC Genomics ◽  
2014 ◽  
Vol 15 (1) ◽  
pp. 827 ◽  
Author(s):  
Yu Zhang ◽  
Shaohui Yang ◽  
Yingjin Song ◽  
Jiehua Wang
Keyword(s):  
Functional Analysis ◽  
Gene Family ◽  
Genome Wide ◽  
Esr Gene

scholarly journals Genome-wide identification and functional analysis of the TIFY gene family in response to drought in cotton

2016 ◽  
Vol 291 (6) ◽  
pp. 2173-2187 ◽  
Author(s):  
Ge Zhao ◽  
Yun Song ◽  
Caixiang Wang ◽  
Hamama Islam Butt ◽  
Qianhua Wang ◽  
...  
Keyword(s):  
Functional Analysis ◽  
Gene Family ◽  
Genome Wide
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