Genome-wide identification, classification and expression analysis in fungal–plant interactions of cutinase gene family and functional analysis of a putative ClCUT7 in Curvularia lunata

2016 ◽  
Vol 291 (3) ◽  
pp. 1105-1115 ◽  
Author(s):  
Tong Liu ◽  
Jumei Hou ◽  
Yuying Wang ◽  
Yazhong Jin ◽  
Wayne Borth ◽  
...  
Keyword(s):  
Functional Analysis ◽  
Gene Family ◽  
Expression Analysis ◽  
Curvularia Lunata ◽  
Plant Interactions ◽  
Genome Wide

scholarly journals Genome-wide identification of cyclin-dependent kinase (CDK) genes affecting adipocyte differentiation in cattle

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Cuili Pan ◽  
Zhaoxiong Lei ◽  
Shuzhe Wang ◽  
Xingping Wang ◽  
Dawei Wei ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Adipocyte Differentiation ◽  
Bos Taurus ◽  
Adipogenic Differentiation ◽  
Critical Role ◽  
Bos Indicus ◽  
Specific Expression ◽  
Genome Wide ◽  
A Genome

Abstract Background Cyclin-dependent kinases (CDKs) are protein kinases regulating important cellular processes such as cell cycle and transcription. Many CDK genes also play a critical role during adipogenic differentiation, but the role of CDK gene family in regulating bovine adipocyte differentiation has not been studied. Therefore, the present study aims to characterize the CDK gene family in bovine and study their expression pattern during adipocyte differentiation. Results We performed a genome-wide analysis and identified a number of CDK genes in several bovine species. The CDK genes were classified into 8 subfamilies through phylogenetic analysis. We found that 25 bovine CDK genes were distributed in 16 different chromosomes. Collinearity analysis revealed that the CDK gene family in Bos taurus is homologous with Bos indicus, Hybrid-Bos taurus, Hybrid Bos indicus, Bos grunniens and Bubalus bubalis. Several CDK genes had higher expression levels in preadipocytes than in differentiated adipocytes, as shown by RNA-seq analysis and qPCR, suggesting a role in the growth of emerging lipid droplets. Conclusion In this research, 185 CDK genes were identified and grouped into eight distinct clades in Bovidae, showing extensively homology. Global expression analysis of different bovine tissues and specific expression analysis during adipocytes differentiation revealed CDK4, CDK7, CDK8, CDK9 and CDK14 may be involved in bovine adipocyte differentiation. The results provide a basis for further study to determine the roles of CDK gene family in regulating adipocyte differentiation, which is beneficial for beef quality improvement.

Genome-Wide Identification and Expression Analysis of the β-Amylase Gene Family in Chenopodium quinoa

2021 ◽  
Author(s):  
Dong-Liang Zhang ◽  
Yu Wang ◽  
Bing-Chen Jia ◽  
Xiao-Qin Tian ◽  
Jing Chu ◽  
...  
Keyword(s):  
Gene Family ◽  
Expression Analysis ◽  
Chenopodium Quinoa ◽  
Amylase Gene ◽  
Genome Wide

Genome-Wide Identification and Expression Analysis of the SRS Gene Family in Medicago sativa

2021 ◽  
Vol 40 (12) ◽  
pp. 1539-1553
Author(s):  
Yingbo Yang ◽  
Lin Qi ◽  
Lili Nian ◽  
Xiaolin Zhu ◽  
Xianfeng Yi ◽  
...  
Keyword(s):  
Gene Family ◽  
Medicago Sativa ◽  
Expression Analysis ◽  
Genome Wide
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