scholarly journals Bioinformatics of virus taxonomy: foundations and tools for developing sequence-based hierarchical classification

2022 ◽  
Vol 52 ◽  
pp. 48-56
Author(s):  
Alexander E Gorbalenya ◽  
Chris Lauber
2018 ◽  
Author(s):  
Whitney R. Ringwald ◽  
Aidan G.C. Wright ◽  
Joseph E. Beeney ◽  
Paul A. Pilkonis

Two dimensional, hierarchical classification models of personality pathology have emerged as alternatives to traditional categorical systems: multi-tiered models with increasing numbers of factors and models that distinguish between a general factor of severity and specific factors reflecting style. Using a large sample (N=840) with a range of psychopathology, we conducted exploratory factor analyses of individual personality disorder criteria to evaluate the validity of these conceptual structures. We estimated an oblique, “unfolding” hierarchy and a bifactor model, then examined correlations between these and multi-method functioning measures to enrich interpretation. Four-factor solutions for each model, reflecting rotations of each other, fit well and equivalently. The resulting structures are consistent with previous empirical work and provide support for each theoretical model.


2015 ◽  
Vol 10 (2) ◽  
pp. 199-207
Author(s):  
Francisco Ortuño ◽  
Hector Pomares ◽  
Olga Valenzuela ◽  
Carolina Torres ◽  
Ignacio Rojas

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Scott Broderick ◽  
Ruhil Dongol ◽  
Tianmu Zhang ◽  
Krishna Rajan

AbstractThis paper introduces the use of topological data analysis (TDA) as an unsupervised machine learning tool to uncover classification criteria in complex inorganic crystal chemistries. Using the apatite chemistry as a template, we track through the use of persistent homology the topological connectivity of input crystal chemistry descriptors on defining similarity between different stoichiometries of apatites. It is shown that TDA automatically identifies a hierarchical classification scheme within apatites based on the commonality of the number of discrete coordination polyhedra that constitute the structural building units common among the compounds. This information is presented in the form of a visualization scheme of a barcode of homology classifications, where the persistence of similarity between compounds is tracked. Unlike traditional perspectives of structure maps, this new “Materials Barcode” schema serves as an automated exploratory machine learning tool that can uncover structural associations from crystal chemistry databases, as well as to achieve a more nuanced insight into what defines similarity among homologous compounds.


2021 ◽  
Vol 11 (15) ◽  
pp. 7088
Author(s):  
Ke Yang ◽  
Yongjian Wang ◽  
Shidong Fan ◽  
Ali Mosleh

Spare parts management is a critical issue in the industrial field, alongside planning maintenance and logistics activities. For accurate classification in particular, the decision-makers can determine the optimal inventory management strategy. However, problems such as criteria selection, rules explanatory, and learning ability arise when managing thousands of spare parts for modern industry. This paper presents a deep convolutional neural network based on graph (G-DCNN) which will realize multi-criteria classification through image identification based on an explainable hierarchical structure. In the first phase, a hierarchical classification structure is established according to the causal relationship of multiple criteria; in the second phase, nodes are colored according to their criteria level status so that the traditional numerical information can be visible through graph style; in the third phase, the colored structures are transferred into images and processed by structure-modified convolutional neural network, to complete the classification. Finally, the proposed method is applied in a real-world case study to validate its effectiveness, feasibility, and generality. This classification study supplies a good decision support to improve the monitor-focus on critical component and control inventory which will benefit the collaborative maintenance.


2021 ◽  
Vol 11 (9) ◽  
pp. 4091
Author(s):  
Débora N. Diniz ◽  
Mariana T. Rezende ◽  
Andrea G. C. Bianchi ◽  
Claudia M. Carneiro ◽  
Daniela M. Ushizima ◽  
...  

Prevention of cervical cancer could be performed using Pap smear image analysis. This test screens pre-neoplastic changes in the cervical epithelial cells; accurate screening can reduce deaths caused by the disease. Pap smear test analysis is exhaustive and repetitive work performed visually by a cytopathologist. This article proposes a workload-reducing algorithm for cervical cancer detection based on analysis of cell nuclei features within Pap smear images. We investigate eight traditional machine learning methods to perform a hierarchical classification. We propose a hierarchical classification methodology for computer-aided screening of cell lesions, which can recommend fields of view from the microscopy image based on the nuclei detection of cervical cells. We evaluate the performance of several algorithms against the Herlev and CRIC databases, using a varying number of classes during image classification. Results indicate that the hierarchical classification performed best when using Random Forest as the key classifier, particularly when compared with decision trees, k-NN, and the Ridge methods.


Sensors ◽  
2014 ◽  
Vol 14 (6) ◽  
pp. 11204-11224 ◽  
Author(s):  
Atena Fekr ◽  
Majid Janidarmian ◽  
Katarzyna Radecka ◽  
Zeljko Zilic

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