scholarly journals Effects of river-lake disconnection and eutrophication on freshwater mollusc assemblages in floodplain lakes: Loss of congeneric species leads to changes in both assemblage composition and taxonomic relatedness

2021 ◽  
pp. 118330
Author(s):  
Xiaoming Jiang ◽  
Zhengfei Li ◽  
Fengyue Shu ◽  
Jing Chen
Keyword(s):  
Floodplain Lakes ◽  
Congeneric Species ◽  
Assemblage Composition ◽  
Taxonomic Relatedness ◽  
Freshwater Mollusc ◽  
Mollusc Assemblages

scholarly journals Freshwater molluscs of the Zrmanja and Krupa Rivers (Croatia) – the role of these rivers as a refuge of threatened and endemic species

2021 ◽  
Vol 29 (2) ◽  
Author(s):  
Luboš Beran
Keyword(s):  
Endemic Species ◽  
Anthropogenic Factors ◽  
Widespread Species ◽  
Underground Waters ◽  
Freshwater Molluscs ◽  
Freshwater Mollusc ◽  
Distributional Information ◽  
Mollusc Species ◽  
Balkan Region ◽  
Mollusc Assemblages

The Balkan region is inhabited by hundreds of endemic species of freshwater molluscs but the information on their distribution, as well as that on the distribution of more common and widespread species, is still insufficient; most areas have no complete inventories of their mollusc faunas. The Zrmanja is one of the largest rivers in the Adriatic part of Croatia. Its freshwater molluscs were studied in the last decade, resulting in a substantial body of distributional data. The main objective of this study was to summarise and analyse the recent distributional information on its freshwater molluscs, with special reference to endemic or threatened species. In total 33 freshwater mollusc species were found in the Zrmanja River and its tributaries at 73 sites. The middle section of the Zrmanja River and its largest tributary, the Krupa River, were the richest studied parts. Dalmatinella fluviatilis Radoman, Tanousia zrmanjae (Brusina) and Islamia zermanica Radoman, endemic to the Zrmanja catchment area, were found in the middle and lower sections of the river. Their occurrence is scattered and limited in area; T. zrmanjae is probably on the verge of extinction. The occurrence of the endemic Belgrandiella kusceri (Wagner), Hadziella sketi Bole and Kerkia sp. in springs or underground waters and an abundant population of Unio elongatulus C. Pfeiffer in the Zrmanja and Krupa Rivers is also noteworthy. The area can be regarded as an important part of the Balkan region, one of world’s hotspots of global biodiversity. Although it is protected, there are still anthropogenic factors that are negatively affecting or may affect the mollusc assemblages.

scholarly journals Wood Pastures: A Transitional Habitat between Forests and Pastures for Dung Beetle Assemblages

Forests ◽  
2020 ◽  
Vol 12 (1) ◽  
pp. 25
Author(s):  
László Somay ◽  
Viktor Szigeti ◽  
Gergely Boros ◽  
Réka Ádám ◽  
András Báldi
Keyword(s):  
Functional Group ◽  
Animal Health ◽  
Habitat Type ◽  
Dung Beetle ◽  
Dung Beetles ◽  
Livestock Grazing ◽  
Pitfall Traps ◽  
Assemblage Composition ◽  
Beetle Assemblages

Wood pastures are home to a variety of species, including the dung beetle. Dung beetles are an important functional group in decomposition. Specifically, in terms of livestock manure, they not only contribute to nutrient cycling but are key players in supporting human and animal health. Dung beetles, however, are declining in population, and urgent recommendations are needed to reverse this trend. Recommendations need to be based on solid evidence and specific habitats. Herein, we aimed to investigate the role of an intermediate habitat type between forests and pastures. Wood pastures are key areas for dung beetle conservation. For this reason, we compared dung beetle assemblages among forests, wood pastures, and grasslands. We complemented this with studies on the effects of dung type and season at three Hungarian locations. Pitfall traps baited with cattle, sheep, or horse dung were used in forests, wood pastures, and pasture habitats in spring, summer, and autumn. Dung beetle assemblages of wood pastures showed transient characteristics between forests and pastures regarding their abundance, species richness, Shannon diversity, assemblage composition, and indicator species. We identified a strong effect of season and a weak of dung type. Assemblage composition proved to be the most sensitive measure of differences among habitats. The conservation of dung beetles, and the decomposition services they provide, need continuous livestock grazing to provide fresh dung, as well as the maintenance of wood pastures where dung beetle assemblages typical of forests and pastures can both survive.

scholarly journals Spatio-temporal selection of reference genes in the two congeneric species of Glycyrrhiza

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yuping Li ◽  
Xiaoju Liang ◽  
Xuguo Zhou ◽  
Yu An ◽  
Ming Li ◽  
...  
Keyword(s):  
Gene Expression ◽  
Developmental Stage ◽  
Reference Genes ◽  
Developmental Stages ◽  
Individual Factors ◽  
Congeneric Species ◽  
Spatio Temporal ◽  
The Stability ◽  
Different Tissues ◽  
Selection Of

AbstractGlycyrrhiza, a genus of perennial medicinal herbs, has been traditionally used to treat human diseases, including respiratory disorders. Functional analysis of genes involved in the synthesis, accumulation, and degradation of bioactive compounds in these medicinal plants requires accurate measurement of their expression profiles. Reverse transcription quantitative real-time PCR (RT-qPCR) is a primary tool, which requires stably expressed reference genes to serve as the internal references to normalize the target gene expression. In this study, the stability of 14 candidate reference genes from the two congeneric species G. uralensis and G. inflata, including ACT, CAC, CYP, DNAJ, DREB, EF1, RAN, TIF1, TUB, UBC2, ABCC2, COPS3, CS, R3HDM2, were evaluated across different tissues and throughout various developmental stages. More importantly, we investigated the impact of interactions between tissue and developmental stage on the performance of candidate reference genes. Four algorithms, including geNorm, NormFinder, BestKeeper, and Delta Ct, were used to analyze the expression stability and RefFinder, a comprehensive software, provided the final recommendation. Based on previous research and our preliminary data, we hypothesized that internal references for spatio-temporal gene expression are different from the reference genes suited for individual factors. In G. uralensis, the top three most stable reference genes across different tissues were R3HDM2, CAC and TUB, while CAC, CYP and ABCC2 were most suited for different developmental stages. CAC is the only candidate recommended for both biotic factors, which is reflected in the stability ranking for the spatio (tissue)-temporal (developmental stage) interactions (CAC, R3HDM2 and DNAJ). Similarly, in G. inflata, COPS3, R3HDM2 and DREB were selected for tissues, while RAN, COPS3 and CS were recommended for developmental stages. For the tissue-developmental stage interactions, COPS3, DREB and ABCC2 were the most suited reference genes. In both species, only one of the top three candidates was shared between the individual factors and their interactions, specifically, CAC in G. uralensis and COPS3 in G. inflata, which supports our overarching hypothesis. In summary, spatio-temporal selection of reference genes not only lays the foundation for functional genomics research in Glycyrrhiza, but also facilitates these traditional medicinal herbs to reach/maximize their pharmaceutical potential.

scholarly journals Limitation of current probe design for oligo-cross-FISH, exemplified by chromosome evolution studies in duckweeds

Chromosoma ◽  
2021 ◽  
Vol 130 (1) ◽  
pp. 15-25
Author(s):  
Phuong T. N. Hoang ◽  
Jean-Marie Rouillard ◽  
Jiří Macas ◽  
Ivona Kubalová ◽  
Veit Schubert ◽  
...  
Keyword(s):  
Growth Rate ◽  
Chromosome Number ◽  
Chromosome Evolution ◽  
Sequence Similarity ◽  
Flowering Plants ◽  
The Other ◽  
Probe Design ◽  
Congeneric Species ◽  
Specific Design ◽  
Spirodela Polyrhiza

AbstractDuckweeds represent a small, free-floating aquatic family (Lemnaceae) of the monocot order Alismatales with the fastest growth rate among flowering plants. They comprise five genera (Spirodela, Landoltia, Lemna, Wolffiella, and Wolffia) varying in genome size and chromosome number. Spirodela polyrhiza had the first sequenced duckweed genome. Cytogenetic maps are available for both species of the genus Spirodela (S. polyrhiza and S. intermedia). However, elucidation of chromosome homeology and evolutionary chromosome rearrangements by cross-FISH using Spirodela BAC probes to species of other duckweed genera has not been successful so far. We investigated the potential of chromosome-specific oligo-FISH probes to address these topics. We designed oligo-FISH probes specific for one S. intermedia and one S. polyrhiza chromosome (Fig. 1a). Our results show that these oligo-probes cross-hybridize with the homeologous regions of the other congeneric species, but are not suitable to uncover chromosomal homeology across duckweeds genera. This is most likely due to too low sequence similarity between the investigated genera and/or too low probe density on the target genomes. Finally, we suggest genus-specific design of oligo-probes to elucidate chromosome evolution across duckweed genera.

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