scholarly journals A homodimeric bacterial exo-β-1,3-glucanase derived from moose rumen microbiome shows a structural framework similar to yeast exo-β-1,3-glucanases

2021 ◽  
Vol 143 ◽  
pp. 109723
Author(s):  
Dayanand C. Kalyani ◽  
Tom Reichenbach ◽  
Henrik Aspeborg ◽  
Christina Divne
Cancers ◽  
2020 ◽  
Vol 13 (1) ◽  
pp. 35
Author(s):  
Sahar Aghakhani ◽  
Naouel Zerrouk ◽  
Anna Niarakis

Fibroblasts, the most abundant cells in the connective tissue, are key modulators of the extracellular matrix (ECM) composition. These spindle-shaped cells are capable of synthesizing various extracellular matrix proteins and collagen. They also provide the structural framework (stroma) for tissues and play a pivotal role in the wound healing process. While they are maintainers of the ECM turnover and regulate several physiological processes, they can also undergo transformations responding to certain stimuli and display aggressive phenotypes that contribute to disease pathophysiology. In this review, we focus on the metabolic pathways of glucose and highlight metabolic reprogramming as a critical event that contributes to the transition of fibroblasts from quiescent to activated and aggressive cells. We also cover the emerging evidence that allows us to draw parallels between fibroblasts in autoimmune disorders and more specifically in rheumatoid arthritis and cancer. We link the metabolic changes of fibroblasts to the toxic environment created by the disease condition and discuss how targeting of metabolic reprogramming could be employed in the treatment of such diseases. Lastly, we discuss Systems Biology approaches, and more specifically, computational modeling, as a means to elucidate pathogenetic mechanisms and accelerate the identification of novel therapeutic targets.


2020 ◽  
Vol 98 (Supplement_4) ◽  
pp. 446-447
Author(s):  
Kaue Tonelli Nardi ◽  
Kaliu G Scaranto Silva ◽  
Igor Gomes Favero ◽  
Jordan K Hinds ◽  
Carly A Hoffmann ◽  
...  

Abstract The effects of steam-flaked corn bulk density during grain adaptation phase on ruminal microbiome were evaluated. Crossbred-Angus ruminally cannulated steers (n = 6; BW = 405 ± 42 kg) were assigned to a randomized complete block design (block = body weight) to 1 of 2 grain adaptation strategies: 1) steam-flaked corn (SFC) bulk density of 335 g/L; and 2) 412 g/L. Steers were ad libitum fed, individually, during 6-7d phases, consisting of: HAY, followed by the STEP-UP1 through STEP-UP4, diets, respectively, in which roughage was gradually replaced with grain until FINISHER diet was fed. Respective SFC bulk densities were fed throughout STEP-UP diets, while the FINISHER diet consisted of 335 g/L strategy only for both groups. Ruminal fluid samples (100 mL) were collected on d-5 of each step, at 6h post-feeding for DNA extraction. Microbiome data were sequenced by Illumnia® NovaSeq™ 6000 (16S rRNA). The SFC bulk density did not affect (P > 0.50) the relative abundance (RA) for any taxonomy classification. Regardless of SFC bulk density, inclusion of grain throughout adaptation phases affected domain (P ≤ 0.03) when initial phases were compared to FINISHER. Phylum RA were affected (P ≤ 0.05) for Actinobacteria (27%), Bacteroidetes (11%), and Euryarchaeota (2%). Within Class RA were affected (P ≤ 0.04) for Clostridia (46%), Actinobacteria (27%), and Bacilli (5%). Order effects on RA were observed (P ≤ 0.04) for Clostridiales (45%), Coriobacteriales (25%), and Lactobacillales (4%). Within Family RA was affected (P ≤ 0.03) for Coriobacteriaceae (25%), Lachnospiraceae (27%), Ruminococcaceae (6%), and Lactobacillaceae (4%), while a tendency (P = 0.09) was observed for Veillonellaceae (1%). In Genus, RA was affected (P ≤ 0.01) for Olsenela (22%), Pediococcus (3%), and Butyrivibrio (3%). As steers advance through subsequent grain adaptation phases until the FINISHER, more meaningful ruminal microbiome changes are observed than SFC density change.


2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Bo He ◽  
Shuwen Jin ◽  
Jiawen Cao ◽  
Lan Mi ◽  
Jiakun Wang

animal ◽  
2021 ◽  
Vol 15 (5) ◽  
pp. 100216
Author(s):  
W. Zhu ◽  
Z. Su ◽  
W. Xu ◽  
H.X. Sun ◽  
J.F. Gao ◽  
...  
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