Commercial tree species discrimination using airborne AISA Eagle hyperspectral imagery and partial least squares discriminant analysis (PLS-DA) in KwaZulu–Natal, South Africa

Author(s):  
Kabir Yunus Peerbhay ◽  
Onisimo Mutanga ◽  
Riyad Ismail
2020 ◽  
pp. 096703352096375
Author(s):  
Wenjian Liu ◽  
Jun Liu ◽  
Jingmin Jiang ◽  
Yanjie Li

Seed vigour significantly influences the seed production and plant regeneration performance. The capability of NIR spectroscopy to identify seed vigour across multiple tree species rapidly and cost-effectively has been examined. The NIR spectra of seeds from five different tree species have been taken. Standard germination testing has also been used to verify seed vigour. Three classification models were trained, i.e., partial least squares-discriminant analysis (PLSDA), support vector machine (SVM) and Multilayer Deep neural network (DNN). Three types of spectral pre-processing methods and their combination were used to fit for the best classification model. The DNN model has shown good performance on all pre-processing methods and yielded higher accuracy than other models in this study, with accuracy, sensitivity, precision and specificity all equal to 1. Compared with other pre-processing methods, the second derivative spectra have shown a robust and consistent classification result in both PLSDA and DNN models. Five important regions including 1270, 1650, 1720, 2100, 2300 nm were found highly related to the seed vigour. This study has found a rapid and efficient methodology for seed vigour classification, which could serve for industrial use in a rapid and non-destructive way.


2013 ◽  
Vol 25 (1) ◽  
pp. 50-58 ◽  
Author(s):  
Miaomiao Jiang ◽  
Chunhua Wang ◽  
Yu Zhang ◽  
Yifan Feng ◽  
Yuefei Wang ◽  
...  

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e8151 ◽  
Author(s):  
Yan-Yan Liu ◽  
Zhong-Xian Yang ◽  
Li-Min Ma ◽  
Xu-Qing Wen ◽  
Huan-Lin Ji ◽  
...  

Background Esophageal squamous cell carcinoma (ESCC) is one of the most prevalent types of upper gastrointestinal malignancies. Here, we used 1H nuclear magnetic resonance spectroscopy (1H-NMR) to identify potential serum biomarkers in patients with early stage ESCC. Methods Sixty-five serum samples from early stage ESCC patients (n = 25) and healthy controls (n = 40) were analysed using 1H-NMR spectroscopy. We distinguished between different metabolites through principal component analysis, partial least squares-discriminant analysis, and orthogonal partial least squares-discriminant analysis (OPLS-DA) using SIMCA-P+ version 14.0 software. Receiver operating characteristic (ROC) analysis was conducted to verify potential biomarkers. Results Using OPLS-DA, 31 altered serum metabolites were successfully identified between the groups. Based on the area under the ROC curve (AUROC), and the biomarker panel with AUROC of 0.969, six serum metabolites (α-glucose, choline, glutamine, glutamate, valine, and dihydrothymine) were selected as potential biomarkers for early stage ESCC. Dihydrothymine particularly was selected as a new feasible biomarker associated with tumor occurrence. Conclusions 1H-NMR spectroscopy may be a useful tumour detection approach in identifying useful metabolic ESCC biomarkers for early diagnosis and in the exploration of the molecular pathogenesis of ESCC.


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