scholarly journals Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration

2019 ◽  
Vol 58 ◽  
pp. 101558 ◽  
Author(s):  
Nooshin Ghavami ◽  
Yipeng Hu ◽  
Eli Gibson ◽  
Ester Bonmati ◽  
Mark Emberton ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Network Architecture ◽  
Automatic Segmentation ◽  
Volume Measurement ◽  
Prostate Mri ◽  
The Impact ◽  
Ultrasound Registration

scholarly journals Using spatial-temporal ensembles of convolutional neural networks for lumen segmentation in ureteroscopy

2021 ◽  
Author(s):  
Jorge F. Lazo ◽  
Aldo Marzullo ◽  
Sara Moccia ◽  
Michele Catellani ◽  
Benoit Rosa ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
State Of The Art ◽  
Automatic Segmentation ◽  
Temporal Information ◽  
Invasive Technique ◽  
Dice Similarity Coefficient ◽  
Specular Reflections ◽  
Lumen Segmentation ◽  
Previous State

Abstract Purpose Ureteroscopy is an efficient endoscopic minimally invasive technique for the diagnosis and treatment of upper tract urothelial carcinoma. During ureteroscopy, the automatic segmentation of the hollow lumen is of primary importance, since it indicates the path that the endoscope should follow. In order to obtain an accurate segmentation of the hollow lumen, this paper presents an automatic method based on convolutional neural networks (CNNs). Methods The proposed method is based on an ensemble of 4 parallel CNNs to simultaneously process single and multi-frame information. Of these, two architectures are taken as core-models, namely U-Net based in residual blocks ($$m_1$$ m 1 ) and Mask-RCNN ($$m_2$$ m 2 ), which are fed with single still-frames I(t). The other two models ($$M_1$$ M 1 , $$M_2$$ M 2 ) are modifications of the former ones consisting on the addition of a stage which makes use of 3D convolutions to process temporal information. $$M_1$$ M 1 , $$M_2$$ M 2 are fed with triplets of frames ($$I(t-1)$$ I ( t - 1 ) , I(t), $$I(t+1)$$ I ( t + 1 ) ) to produce the segmentation for I(t). Results The proposed method was evaluated using a custom dataset of 11 videos (2673 frames) which were collected and manually annotated from 6 patients. We obtain a Dice similarity coefficient of 0.80, outperforming previous state-of-the-art methods. Conclusion The obtained results show that spatial-temporal information can be effectively exploited by the ensemble model to improve hollow lumen segmentation in ureteroscopic images. The method is effective also in the presence of poor visibility, occasional bleeding, or specular reflections.

scholarly journals Detection of liver cirrhosis in standard T2-weighted MRI using deep transfer learning

2021 ◽  
Author(s):  
Sebastian Nowak ◽  
Narine Mesropyan ◽  
Anton Faron ◽  
Wolfgang Block ◽  
Martin Reuter ◽  
...  
Keyword(s):  
Neural Networks ◽  
Liver Cirrhosis ◽  
Transfer Learning ◽  
Convolutional Neural Networks ◽  
Classification Accuracy ◽  
Automatic Segmentation ◽  
Analysis Data ◽  
Caudate Lobe ◽  
Natural Image ◽  
Liver Segmentation

Abstract Objectives To investigate the diagnostic performance of deep transfer learning (DTL) to detect liver cirrhosis from clinical MRI. Methods The dataset for this retrospective analysis consisted of 713 (343 female) patients who underwent liver MRI between 2017 and 2019. In total, 553 of these subjects had a confirmed diagnosis of liver cirrhosis, while the remainder had no history of liver disease. T2-weighted MRI slices at the level of the caudate lobe were manually exported for DTL analysis. Data were randomly split into training, validation, and test sets (70%/15%/15%). A ResNet50 convolutional neural network (CNN) pre-trained on the ImageNet archive was used for cirrhosis detection with and without upstream liver segmentation. Classification performance for detection of liver cirrhosis was compared to two radiologists with different levels of experience (4th-year resident, board-certified radiologist). Segmentation was performed using a U-Net architecture built on a pre-trained ResNet34 encoder. Differences in classification accuracy were assessed by the χ2-test. Results Dice coefficients for automatic segmentation were above 0.98 for both validation and test data. The classification accuracy of liver cirrhosis on validation (vACC) and test (tACC) data for the DTL pipeline with upstream liver segmentation (vACC = 0.99, tACC = 0.96) was significantly higher compared to the resident (vACC = 0.88, p < 0.01; tACC = 0.91, p = 0.01) and to the board-certified radiologist (vACC = 0.96, p < 0.01; tACC = 0.90, p < 0.01). Conclusion This proof-of-principle study demonstrates the potential of DTL for detecting cirrhosis based on standard T2-weighted MRI. The presented method for image-based diagnosis of liver cirrhosis demonstrated expert-level classification accuracy. Key Points • A pipeline consisting of two convolutional neural networks (CNNs) pre-trained on an extensive natural image database (ImageNet archive) enables detection of liver cirrhosis on standard T2-weighted MRI. • High classification accuracy can be achieved even without altering the pre-trained parameters of the convolutional neural networks. • Other abdominal structures apart from the liver were relevant for detection when the network was trained on unsegmented images.

Fully automatic segmentation of sinonasal cavity and pharyngeal airway based on convolutional neural networks

2021 ◽  
Vol 159 (6) ◽  
pp. 824-835.e1
Author(s):  
Rosalia Leonardi ◽  
Antonino Lo Giudice ◽  
Marco Farronato ◽  
Vincenzo Ronsivalle ◽  
Silvia Allegrini ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Automatic Segmentation ◽  
Pharyngeal Airway ◽  
Fully Automatic

scholarly journals X-ray image based pneumonia classification using convolutional neural networks

2020 ◽  
Vol 6 (20) ◽  
pp. 54-67
Author(s):  
Sarah Badr AlSumairi ◽  
Mohamed Maher Ben Ismail
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Network Architecture ◽  
Data Augmentation ◽  
Critical Factor ◽  
Classification Problem ◽  
X Rays ◽  
X Ray ◽  
Erroneous Decision ◽  
Short Period

Pneumonia is an infectious disease of the lungs. About one third to one half of pneumonia cases are caused by bacteria. Early diagnosis is a critical factor for a successful treatment process. Typically, the disease can be diagnosed by a radiologist using chest X-ray images. In fact, chest X-rays are currently the best available method for diagnosing pneumonia. However, the recognition of pneumonia symptoms is a challenging task that relies on the availability of expert radiologists. Such “human” diagnosis can be inaccurate and subjective due to lack of clarity and erroneous decision. Moreover, the error can increase more if the physician is requested to analyze tens of X-rays within a short period of time. Therefore, Computer-Aided Diagnosis (CAD) systems were introduced to support and assist physicians and make their efforts more productive. In this paper, we investigate, design, implement and assess customized Convolutional Neural Networks to overcome the image-based Pneumonia classification problem. Namely, ResNet-50 and DenseNet-161 models were inherited to design customized deep network architecture and improve the overall pneumonia classification accuracy. Moreover, data augmentation was deployed and associated with standard datasets to assess the proposed models. Besides, standard performance measures were used to validate and evaluate the proposed system.

scholarly journals A Hybrid GA-PSO Method for Evolving Architecture and Short Connections of Deep Convolutional Neural Networks

2020 ◽  
Author(s):  
B Wang ◽  
Y Sun ◽  
Bing Xue ◽  
Mengjie Zhang
Keyword(s):  
Neural Networks ◽  
Image Classification ◽  
Convolutional Neural Networks ◽  
Network Architecture ◽  
Learning Task ◽  
Fixed Number ◽  
Learning Rate ◽  
Current Layer ◽  
Training Process ◽  
Deep Convolutional Neural Networks

© 2019, Springer Nature Switzerland AG. Image classification is a difficult machine learning task, where Convolutional Neural Networks (CNNs) have been applied for over 20 years in order to solve the problem. In recent years, instead of the traditional way of only connecting the current layer with its next layer, shortcut connections have been proposed to connect the current layer with its forward layers apart from its next layer, which has been proved to be able to facilitate the training process of deep CNNs. However, there are various ways to build the shortcut connections, it is hard to manually design the best shortcut connections when solving a particular problem, especially given the design of the network architecture is already very challenging. In this paper, a hybrid evolutionary computation (EC) method is proposed to automatically evolve both the architecture of deep CNNs and the shortcut connections. Three major contributions of this work are: Firstly, a new encoding strategy is proposed to encode a CNN, where the architecture and the shortcut connections are encoded separately; Secondly, a hybrid two-level EC method, which combines particle swarm optimisation and genetic algorithms, is developed to search for the optimal CNNs; Lastly, an adjustable learning rate is introduced for the fitness evaluations, which provides a better learning rate for the training process given a fixed number of epochs. The proposed algorithm is evaluated on three widely used benchmark datasets of image classification and compared with 12 peer Non-EC based competitors and one EC based competitor. The experimental results demonstrate that the proposed method outperforms all of the peer competitors in terms of classification accuracy.

scholarly journals A Survey on Techniques used in Medical Imaging Processing

2021 ◽  
Vol 2089 (1) ◽  
pp. 012013
Author(s):  
Priyadarshini Chatterjee ◽  
Dutta Sushama Rani
Keyword(s):  
Neural Network ◽  
Neural Networks ◽  
Image Analysis ◽  
Convolutional Neural Network ◽  
Convolutional Neural Networks ◽  
Network Architecture ◽  
Medical Image Analysis ◽  
Artificial Neural ◽  
Automated Screening ◽  
To Come

Abstract Automated diagnosis of diseases in the recent years have gain lots of advantages and potential. Specially automated screening of cancers has helped the clinicians over the time. Sometimes it is seen that the diagnosis of the clinicians is biased but automated detection can help them to come to a proper conclusion. Automated screening is implemented using either artificial inter connected system or convolutional inter connected system. As Artificial neural network is slow in computation, so Convolutional Neural Network has achieved lots of importance in the recent years. It is also seen that Convolutional Neural Network architecture requires a smaller number of datasets. This also provides them an edge over Artificial Neural Networks. Convolutional Neural Networks is used for both segmentation and classification. Image dissection is one of the important steps in the model used for any kind of image analysis. This paper surveys various such Convolutional Neural Networks that are used for medical image analysis.

scholarly journals Using Convolutional Neural Networks to Automate Aircraft Maintenance Visual Inspection

Aerospace ◽  
2020 ◽  
Vol 7 (12) ◽  
pp. 171
Author(s):  
Anil Doğru ◽  
Soufiane Bouarfa ◽  
Ridwan Arizar ◽  
Reyhan Aydoğan
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Network Architecture ◽  
Visual Inspection ◽  
Hybrid Approach ◽  
Lightning Strike ◽  
Aircraft Maintenance ◽  
Original Dataset ◽  
Wide Range ◽  
Augmentation Techniques

Convolutional Neural Networks combined with autonomous drones are increasingly seen as enablers of partially automating the aircraft maintenance visual inspection process. Such an innovative concept can have a significant impact on aircraft operations. Though supporting aircraft maintenance engineers detect and classify a wide range of defects, the time spent on inspection can significantly be reduced. Examples of defects that can be automatically detected include aircraft dents, paint defects, cracks and holes, and lightning strike damage. Additionally, this concept could also increase the accuracy of damage detection and reduce the number of aircraft inspection incidents related to human factors like fatigue and time pressure. In our previous work, we have applied a recent Convolutional Neural Network architecture known by MASK R-CNN to detect aircraft dents. MASK-RCNN was chosen because it enables the detection of multiple objects in an image while simultaneously generating a segmentation mask for each instance. The previously obtained F1 and F2 scores were 62.67% and 59.35%, respectively. This paper extends the previous work by applying different techniques to improve and evaluate prediction performance experimentally. The approach uses include (1) Balancing the original dataset by adding images without dents; (2) Increasing data homogeneity by focusing on wing images only; (3) Exploring the potential of three augmentation techniques in improving model performance namely flipping, rotating, and blurring; and (4) using a pre-classifier in combination with MASK R-CNN. The results show that a hybrid approach combining MASK R-CNN and augmentation techniques leads to an improved performance with an F1 score of (67.50%) and F2 score of (66.37%).

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