scholarly journals Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images

NeuroImage ◽  
2018 ◽  
Vol 183 ◽  
pp. 150-172 ◽  
Author(s):  
Aaron Carass ◽  
Jennifer L. Cuzzocreo ◽  
Shuo Han ◽  
Carlos R. Hernandez-Castillo ◽  
Paul E. Rasser ◽  
...  
2022 ◽  
Vol 15 ◽  
Author(s):  
Yu Yan ◽  
Yaël Balbastre ◽  
Mikael Brudfors ◽  
John Ashburner

Segmentation of brain magnetic resonance images (MRI) into anatomical regions is a useful task in neuroimaging. Manual annotation is time consuming and expensive, so having a fully automated and general purpose brain segmentation algorithm is highly desirable. To this end, we propose a patched-based labell propagation approach based on a generative model with latent variables. Once trained, our Factorisation-based Image Labelling (FIL) model is able to label target images with a variety of image contrasts. We compare the effectiveness of our proposed model against the state-of-the-art using data from the MICCAI 2012 Grand Challenge and Workshop on Multi-Atlas Labelling. As our approach is intended to be general purpose, we also assess how well it can handle domain shift by labelling images of the same subjects acquired with different MR contrasts.


2020 ◽  
Vol 10 (7) ◽  
pp. 427
Author(s):  
Muhammad Yaqub ◽  
Jinchao Feng ◽  
M. Sultan Zia ◽  
Kaleem Arshid ◽  
Kebin Jia ◽  
...  

Brain tumors have become a leading cause of death around the globe. The main reason for this epidemic is the difficulty conducting a timely diagnosis of the tumor. Fortunately, magnetic resonance images (MRI) are utilized to diagnose tumors in most cases. The performance of a Convolutional Neural Network (CNN) depends on many factors (i.e., weight initialization, optimization, batches and epochs, learning rate, activation function, loss function, and network topology), data quality, and specific combinations of these model attributes. When we deal with a segmentation or classification problem, utilizing a single optimizer is considered weak testing or validity unless the decision of the selection of an optimizer is backed up by a strong argument. Therefore, optimizer selection processes are considered important to validate the usage of a single optimizer in order to attain these decision problems. In this paper, we provides a comprehensive comparative analysis of popular optimizers of CNN to benchmark the segmentation for improvement. In detail, we perform a comparative analysis of 10 different state-of-the-art gradient descent-based optimizers, namely Adaptive Gradient (Adagrad), Adaptive Delta (AdaDelta), Stochastic Gradient Descent (SGD), Adaptive Momentum (Adam), Cyclic Learning Rate (CLR), Adaptive Max Pooling (Adamax), Root Mean Square Propagation (RMS Prop), Nesterov Adaptive Momentum (Nadam), and Nesterov accelerated gradient (NAG) for CNN. The experiments were performed on the BraTS2015 data set. The Adam optimizer had the best accuracy of 99.2% in enhancing the CNN ability in classification and segmentation.


Author(s):  
Pranaba Kumar Mishro ◽  
Sanjay Agrawal ◽  
Rutuparna Panda ◽  
Ajith Abraham

Author(s):  
M.J. Hennessy ◽  
E. Kwok

Much progress in nuclear magnetic resonance microscope has been made in the last few years as a result of improved instrumentation and techniques being made available through basic research in magnetic resonance imaging (MRI) technologies for medicine. Nuclear magnetic resonance (NMR) was first observed in the hydrogen nucleus in water by Bloch, Purcell and Pound over 40 years ago. Today, in medicine, virtually all commercial MRI scans are made of water bound in tissue. This is also true for NMR microscopy, which has focussed mainly on biological applications. The reason water is the favored molecule for NMR is because water is,the most abundant molecule in biology. It is also the most NMR sensitive having the largest nuclear magnetic moment and having reasonable room temperature relaxation times (from 10 ms to 3 sec). The contrast seen in magnetic resonance images is due mostly to distribution of water relaxation times in sample which are extremely sensitive to the local environment.


Author(s):  
Alan P. Koretsky ◽  
Afonso Costa e Silva ◽  
Yi-Jen Lin

Magnetic resonance imaging (MRI) has become established as an important imaging modality for the clinical management of disease. This is primarily due to the great tissue contrast inherent in magnetic resonance images of normal and diseased organs. Due to the wide availability of high field magnets and the ability to generate large and rapidly switched magnetic field gradients there is growing interest in applying high resolution MRI to obtain microscopic information. This symposium on MRI microscopy highlights new developments that are leading to increased resolution. The application of high resolution MRI to significant problems in developmental biology and cancer biology will illustrate the potential of these techniques.In combination with a growing interest in obtaining high resolution MRI there is also a growing interest in obtaining functional information from MRI. The great success of MRI in clinical applications is due to the inherent contrast obtained from different tissues leading to anatomical information.


2004 ◽  
Vol 30 (2) ◽  
pp. 315-326 ◽  
Author(s):  
Lori Marino ◽  
Keith Sudheimer ◽  
D. Ann Pabst ◽  
William A. Mclellan ◽  
Saima Arshad ◽  
...  

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