Antibiotic resistance gene transfer during anaerobic digestion with added copper: Important roles of mobile genetic elements

2020 ◽  
Vol 743 ◽  
pp. 140759 ◽  
Author(s):  
Ranran Zhang ◽  
Jie Gu ◽  
Xiaojuan Wang ◽  
Yang Li
2011 ◽  
Vol 78 (2) ◽  
pp. 210-219 ◽  
Author(s):  
Martina C. Haug ◽  
Sabine A. Tanner ◽  
Christophe Lacroix ◽  
Marc J.A. Stevens ◽  
Leo Meile

2022 ◽  
Vol 23 (2) ◽  
pp. 731
Author(s):  
Olena V. Moshynets ◽  
Taras P. Baranovskyi ◽  
Olga S. Iungin ◽  
Nadiia P. Kysil ◽  
Larysa O. Metelytsia ◽  
...  

The choice of effective biocides used for routine hospital practice should consider the role of disinfectants in the maintenance and development of local resistome and how they might affect antibiotic resistance gene transfer within the hospital microbial population. Currently, there is little understanding of how different biocides contribute to eDNA release that may contribute to gene transfer and subsequent environmental retention. Here, we investigated how different biocides affect the release of eDNA from mature biofilms of two opportunistic model strains Pseudomonas aeruginosa ATCC 27853 (PA) and Staphylococcus aureus ATCC 25923 (SA) and contribute to the hospital resistome in the form of surface and water contaminants and dust particles. The effect of four groups of biocides, alcohols, hydrogen peroxide, quaternary ammonium compounds, and the polymeric biocide polyhexamethylene guanidine hydrochloride (PHMG-Cl), was evaluated using PA and SA biofilms. Most biocides, except for PHMG-Cl and 70% ethanol, caused substantial eDNA release, and PHMG-Cl was found to block biofilm development when used at concentrations of 0.5% and 0.1%. This might be associated with the formation of DNA–PHMG-Cl complexes as PHMG-Cl is predicted to bind to AT base pairs by molecular docking assays. PHMG-Cl was found to bind high-molecular DNA and plasmid DNA and continued to inactivate DNA on surfaces even after 4 weeks. PHMG-Cl also effectively inactivated biofilm-associated antibiotic resistance gene eDNA released by a pan-drug-resistant Klebsiella strain, which demonstrates the potential of a polymeric biocide as a new surface-active agent to combat the spread of antibiotic resistance in hospital settings.


2018 ◽  
Vol 94 (9) ◽  
Author(s):  
Robert D Stedtfeld ◽  
Xueping Guo ◽  
Tiffany M Stedtfeld ◽  
Hongjie Sheng ◽  
Maggie R Williams ◽  
...  

ABSTRACT The high-throughput antibiotic resistance gene (ARG) qPCR array, initially published in 2012, is increasingly used to quantify resistance and mobile determinants in environmental matrices. Continued utility of the array; however, necessitates improvements such as removing or redesigning questionable primer sets, updating targeted genes and coverage of available sequences. Towards this goal, a new primer design tool (EcoFunPrimer) was used to aid in identification of conserved regions of diverse genes. The total number of assays used for diverse genes was reduced from 91 old primer sets to 52 new primer sets, with only a 10% loss in sequence coverage. While the old and new array both contain 384 primer sets, a reduction in old primer sets permitted 147 additional ARGs and mobile genetic elements to be targeted. Results of validating the updated array with a mock community of strains resulted in over 98% of tested instances incurring true positive/negative calls. Common queries related to sensitivity, quantification and conventional data analysis (e.g. Ct cutoff value, and estimated genomic copies without standard curves) were also explored. A combined list of new and previously used primer sets is provided with a recommended set based on redesign of primer sets and results of validation.


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