scholarly journals CRISPR-Cas Genome editing system: a versatile tool for developing disease resistant crops

Plant Stress ◽  
2022 ◽  
pp. 100056
Author(s):  
Ashwini Talakayala ◽  
Srinivas Ankanagari ◽  
Mallikarjuna Garladinne
Author(s):  
Anindya Bandyopadhyay ◽  
Nagesh Kancharla ◽  
vivek javalkote ◽  
santanu dasgupta ◽  
Thomas Brutnell

Global population is predicted to approach 10 billion by 2050, an increase of over 2 billion from today. To meet the demands of growing, geographically and socio-economically diversified nations, we need to diversity and expand agricultural production. This expansion of agricultural productivity will need to occur under increasing biotic, and environmental constraints driven by climate change. Clustered regularly interspaced short palindromic repeats-site directed nucleases (CRISPR-SDN) and similar genome editing technologies will likely be key enablers to meet future agricultural needs. While the application of CRISPR-Cas9 mediated genome editing has led the way, the use of CRISPR-Cas12a is also increasing significantly for genome engineering of plants. The popularity of the CRISPR-Cas12a, the type V (class-II) system, is gaining momentum because of its versatility and simplified features. These include the use of a small guide RNA devoid of trans-activating crispr RNA (tracrRNA), targeting of T-rich regions of the genome where Cas9 is not suitable for use, RNA processing capability facilitating simpler multiplexing, and its ability to generate double strand breaks (DSB) with staggered ends. Many monocot and dicot species have been successfully edited using this Cas12a system and further research is ongoing to improve its efficiency in plants, including improving the temperature stability of the Cas12a enzyme, identifying new variants of Cas12a or synthetically producing Cas12a with flexible PAM sequences. In this review we provide a comparative survey of CRISPR-Cas12a and Cas9, and provide a perspective on applications of CRISPR-Cas12 in agriculture.


Genes ◽  
2020 ◽  
Vol 11 (11) ◽  
pp. 1311
Author(s):  
Liuru Su ◽  
Chenggang Shi ◽  
Xin Huang ◽  
Yiquan Wang ◽  
Guang Li

The cephalochordate amphioxus is a promising animal model for studying the origin of vertebrates due to its key phylogenetic position among chordates. Although transcription activator-like effector nucleases (TALENs) have been adopted in amphioxus genome editing, its labor-intensive construction of TALEN proteins limits its usage in many laboratories. Here we reported an application of the CRISPR/Cas9 system, a more amenable genome editing method, in this group of animals. Our data showed that while co-injection of Cas9 mRNAs and sgRNAs into amphioxus unfertilized eggs caused no detectable mutations at targeted loci, injections of Cas9 mRNAs and sgRNAs at the two-cell stage, or of Cas9 protein and sgRNAs before fertilization, can execute efficient disruptions of targeted genes. Among the nine tested sgRNAs (targeting five genes) co-injected with Cas9 protein, seven introduced mutations with efficiency ranging from 18.4% to 90% and four caused specific phenotypes in the injected embryos. We also demonstrated that monomerization of sgRNAs via thermal treatment or modifying the sgRNA structure could increase mutation efficacies. Our study will not only promote application of genome editing method in amphioxus research, but also provide valuable experiences for other organisms in which the CRISPR/Cas9 system has not been successfully applied.


2020 ◽  
Vol 6 (6) ◽  
pp. 372-384
Author(s):  
Yating Chen ◽  
Wenwen Mao ◽  
Ting Liu ◽  
Qianqian Feng ◽  
Li Li ◽  
...  

2000 ◽  
Vol 9 (6) ◽  
pp. 805-815 ◽  
Author(s):  
Manas K. Ray ◽  
Shawn P. Fagan ◽  
F. Charles Brunicardi

2008 ◽  
Author(s):  
C. Muralidhar ◽  
G. V. Siva Rao ◽  
K. Kumaran ◽  
M. P. Subramanian ◽  
Sijo N. Lukose ◽  
...  

Author(s):  
Manish Joshi ◽  
Pawan Lingras ◽  
Gajendra Wani ◽  
Peng Zhang

This chapter exemplifies how clustering can be a versatile tool in real life applications. Optimal inventory prediction is one of the important issues faced by owners of retail chain stores. Researchers have made several attempts to develop a generic forecasting model for accurate inventory prediction for all products. Regression analysis, neural networks, exponential smoothing, and Autoregressive Integrated Moving Average (ARIMA) are some of the widely used time series prediction techniques in inventory management. However, such generic models have limitations. The authors propose an approach that uses time series clustering and time series prediction techniques to forecast future demand for each product in an inventory management system. A stability and seasonality analysis of the time series is proposed to identify groups of products (local groups) exhibiting similar sales patterns. The details of the experimental techniques and results for obtaining optimal inventory predictions are shared in this chapter.


2018 ◽  
Vol 56 (1) ◽  
pp. 479-512 ◽  
Author(s):  
Thorsten Langner ◽  
Sophien Kamoun ◽  
Khaoula Belhaj

Genome editing by sequence-specific nucleases (SSNs) has revolutionized biology by enabling targeted modifications of genomes. Although routine plant genome editing emerged only a few years ago, we are already witnessing the first applications to improve disease resistance. In particular, CRISPR-Cas9 has democratized the use of genome editing in plants thanks to the ease and robustness of this method. Here, we review the recent developments in plant genome editing and its application to enhancing disease resistance against plant pathogens. In the future, bioedited disease resistant crops will become a standard tool in plant breeding.


Gene ◽  
2019 ◽  
Vol 685 ◽  
pp. 70-75 ◽  
Author(s):  
Wajid Hussain ◽  
Tariq Mahmood ◽  
Jawad Hussain ◽  
Niyaz Ali ◽  
Tariq Shah ◽  
...  

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