Light Optical Diffraction Studies of Macromolecular Ultrastructure

Author(s):  
Glen B. Haydon

Analysis of light optical diffraction patterns produced by electron micrographs can easily lead to much nonsense. Such diffraction patterns are referred to as optical transforms and are compared with transforms produced by a variety of mathematical manipulations. In the use of light optical diffraction patterns to study periodicities in macromolecular ultrastructures, a number of potential pitfalls have been rediscovered. The limitations apply to the formation of the electron micrograph as well as its analysis.(1) The high resolution electron micrograph is itself a complex diffraction pattern resulting from the specimen, its stain, and its supporting substrate. Cowley and Moodie (Proc. Phys. Soc. B, LXX 497, 1957) demonstrated changing image patterns with changes in focus. Similar defocus images have been subjected to further light optical diffraction analysis.

We have used the techniques of optical diffraction and optical filtering to study electron micrographs of myofibrils and of paracrystals of myofibrillar proteins. The optical diffraction patterns provide information about periodic structure in the micrographs, and sometimes may reveal periodicities not apparent to the eye. We compare the optical diffraction patterns with the X-ray diffraction patterns obtained from living muscle, and this comparison can assist our interpretation of both the X-ray diffraction patterns and the electron micrographs. The optical diffractometer we have used is essentially similar to those described by Taylor & Lipson (1964), and by Klug & DeRosier (1966). The apparatus incorporates several refinements to facilitate operation. The recombining lens has a focal length, f , of about 1 m, and is placed so that the recombined image is formed at 2 f and has the same size as the subject. The diffraction subjects are not usually the electron micrographs themselves but copies on film. The film is of more uniform optical thickness than the glass electron micrograph, and is less fragile. Moreover, a set of films of varying contrast can be made from one micrograph.


1982 ◽  
Vol 92 (2) ◽  
pp. 443-451 ◽  
Author(s):  
R W Kensler ◽  
R J Levine

Long, thick filaments (greater than 4.0 micrometer) rapidly and gently isolated from fresh, unstimulated Limulus muscle by an improved procedure have been examined by electron microscopy and optical diffraction. Images of negatively stained filaments appear highly periodic with a well-preserved myosin cross-bridge array. Optical diffraction patterns of the electron micrographs show a wealth of detail and are consistent with a myosin helical repeat of 43.8 nm, similar to that observed by x-ray diffraction. Analysis of the optical diffraction patterns, in conjunction with the appearance in electron micrographs of the filaments, supports a model for the filament in which the myosin cross-bridges are arranged on a four-stranded helix, with 12 cross-bridges per turn or each helix, thus giving an axial repeat every third level of cross-bridges (43.8 nm).


Materials containing planar boundaries are of general interest and complete understanding of their structures is important. When direct imaging of the boundaries by, for instance, high-resolution electron microscopy, is impracticable, details of their structure and arrangement may be obtained from electron diffraction patterns. Such patterns are discussed in terms of those from intergrowth tungsten bronzes as specific examples. Fourier-transform calculations for proposed structures have been made to establish, in conjunction with optical-diffraction analogues, the features of the far-field diffraction patterns. These results have been compared with diffraction patterns obtained experimentally by transmission electron microscopy. The aim of the study, to show that the arrangement of the boundaries in these complicated phases can be deduced from their diffraction patterns without the need for high-resolution imaging, has been achieved. The steps to be taken to make these deductions are set out.


Author(s):  
K. Hiraga ◽  
D. Shindo ◽  
M. Hirabayashi ◽  
T. Oikawa ◽  
N. Mori ◽  
...  

The “Imaging Plate” (IP) has three superior characteristics, i.e., high sensitivity to the electron beam, and a wide dynamic range and good linearity for electron dose compared with conventional EM films. The use of the IP is expected to lead to quantitative analysis of electron microscopy. The purpose of the present work is to examine the possibility of application of the IP to the quantitative analysis of electron diffraction and high-resolution electron microscopy.By using the TEM-IP System developed by Oikawa et al., which is published in this conference, electron diffraction patterns and high-resolution electron micrographs taken on the IP with an effective size of 102 х 77 mm2 were convertedinto digital data of 2048 х 1536 pixels with 4096 gray levels. Observations of electron diffraction patterns and high-resolution electron micrographs were made with a 200 kV (JEM-2000FX) and a 400 kV (JEM-4000EX) electron microscope, respectively.


Author(s):  
Yoshio Bando ◽  
Sumio Iijima

Incommensurate superstructures are interesting problems for high resolution electron microscopy. If modulations are formed within a plane of a host lattice parallel to the incident beam direction, their structures can be known directly from images (1,2,3). In this paper, an incommensurate superstructure of hexagonal potassium tungsten bronze, K0.3WO3, is observed by a 100B high-resolution electron microscope and its structure model is proposed. The hexagonal tungsten bronze was determined by Magneli (4) and its structure is shown in Fig. 1. The structure consists of WO6 octahedra and alkali metal ions. The alkali metal ions situated in hexagonal tunnels do not lie at the same level of the WO6 octahedra but at ¼ c above or below them. It was assumed that the alkali metal ions were distributed in a random fashion. Fig. 2 shows a structure image of K0.3WO3, taken along the [100] direction. The white spots correspond to hexagonal tunnels in Fig. 1. Fig. 3 shows an electron diffraction pattern taken along the [010] direction. Some additional weak superstructure spots are observed. The superstructure spot (indicated by A) is situated at a non-integral multiple position of the subcell spots along the c*-axis, indicating that the incommensurate superstructure has a multiplicity of 2.2 x c of the subcell. The non-integral periodicity can be seen in a high-resolution image taken along the [010] direction, as shown in Fig. 4. At the thick crystal regions, some weak dark bands running parallel to the c axis are observed, in which they have two different widths (2 x c or 2.5 x c) along the c axis. An average distance between the adjacent dark bands becomes about 2.2 x c, which is consistent with an optical diffraction pattern (inset in Fig. 4). One of the possible models for the incommensurate superstructure of the hexagonal tungsten bronze is proposed in Fig. 5. The superstructure arises from the local ordering of K ion vacancies located in the tunnels along the c axis. The vacancies are formed at every fourth or fifth site of K ions. We call them structures with n = 4 and n = 5. The incommensurate superstructure results from a mixture of the structure elements with n = 4 and n = 5, causing the formation of a non-integral periodicity observed presently. It should be noted in Fig. 4 that the image from a thin region does not show the superstructure but the image from a thick region does. It seems that this phenomenon arises from dynamical diffraction effects. This will be discussed in detail on the basis of the image calculation.


1985 ◽  
Vol 101 (2) ◽  
pp. 395-401 ◽  
Author(s):  
R W Kensler ◽  
R J Levine ◽  
M Stewart

We rapidly and gently isolated thick filaments from scorpion tail muscle by a modification of the technique previously described for isolating Limulus thick filaments. Images of negatively stained filaments appeared to be highly periodic, with a well-preserved myosin cross-bridge array. Optical diffraction patterns of the electron micrograph images were detailed and similar to optical diffraction patterns from Limulus and tarantula thick filaments. Analysis of the optical diffraction patterns and computed Fourier transforms, together with the appearance of the filaments in the micrographs, suggested a model for the filaments in which the myosin cross-bridges were arranged on four helical strands with 12 cross-bridges per turn of each strand, thus giving the observed repeat every third cross-bridge level. Comparison of the scorpion thick filaments with those isolated from the closely related chelicerate arthropods, Limulus and tarantula, revealed that they were remarkably similar in appearance and helical symmetry but different in diameter.


Author(s):  
L.D. Marks

Full alignment of a high resolution electron microscope, including alignment of the beam tilt, is a very difficult process. Whereas astigmatism correction is relatively straightforward, correcting the beam tilt is by no means so simple and there is a strong interaction between astigmatism and tilt so that it is possible to apparently correct the two at one defocus. To overcome this problem, the method of applying a ± tilt oscillation to the beam has been introduced previously, the principle being to adjust the texture of an amorphous carbon film image so that it is symmetric with respect to the tilt oscillations. This procedure works, but in practice is not easy to use and there are additional experimental problems in terms of loss of intensity due to insufficiently corrected beam shift/tilt purity.As an extension of this process, and as a general extension of astigmatism correction as well, we have developed a procedure for providing a computer generated optical diffraction pattern to compliment the standard TV image. One critical problem was providing optical diffraction patterns at a sufficiently rapid speed to make the process experimentally viable; one optical diffraction pattern every 5 seconds for example is too slow. The numerical procedure can be broken down into a number of different steps:


Author(s):  
W. H. Wu ◽  
R. M. Glaeser

Spirillum serpens possesses a surface layer protein which exhibits a regular hexagonal packing of the morphological subunits. A morphological model of the structure of the protein has been proposed at a resolution of about 25 Å, in which the morphological unit might be described as having the appearance of a flared-out, hollow cylinder with six ÅspokesÅ at the flared end. In order to understand the detailed association of the macromolecules, it is necessary to do a high resolution structural analysis. Large, single layered arrays of the surface layer protein have been obtained for this purpose by means of extensive heating in high CaCl2, a procedure derived from that of Buckmire and Murray. Low dose, low temperature electron microscopy has been applied to the large arrays.As a first step, the samples were negatively stained with neutralized phosphotungstic acid, and the specimens were imaged at 40,000 magnification by use of a high resolution cold stage on a JE0L 100B. Low dose images were recorded with exposures of 7-9 electrons/Å2. The micrographs obtained (Fig. 1) were examined by use of optical diffraction (Fig. 2) to tell what areas were especially well ordered.


Author(s):  
John L. Hutchison

Over the past five years or so the development of a new generation of high resolution electron microscopes operating routinely in the 300-400 kilovolt range has produced a dramatic increase in resolution, to around 1.6 Å for “structure resolution” and approaching 1.2 Å for information limits. With a large number of such instruments now in operation it is timely to assess their impact in the various areas of materials science where they are now being used. Are they falling short of the early expectations? Generally, the manufacturers’ claims regarding resolution are being met, but one unexpected factor which has emerged is the extreme sensitivity of these instruments to both floor-borne and acoustic vibrations. Successful measures to counteract these disturbances may require the use of special anti-vibration blocks, or even simple oil-filled dampers together with springs, with heavy curtaining around the microscope room to reduce noise levels. In assessing performance levels, optical diffraction analysis is becoming the accepted method, with rotational averaging useful for obtaining a good measure of information limits. It is worth noting here that microscope alignment becomes very critical for the highest resolution.In attempting an appraisal of the contributions of intermediate voltage HREMs to materials science we will outline a few of the areas where they are most widely used. These include semiconductors, oxides, and small metal particles, in addition to metals and minerals.


Author(s):  
Yoshinori Fujiyoshi

The resolution of direct images of biological macromolecules is normally restricted to far less than 0.3 nm. This is not due instrumental resolution, but irradiation damage. The damage to biological macromolecules may expect to be reduced when they are cooled to a very low temperature. We started to develop a new cryo-stage for a high resolution electron microscopy in 1983, and successfully constructed a superfluid helium stage for a 400 kV microscope by 1986, whereby chlorinated copper-phthalocyanine could be photographed to a resolution of 0.26 nm at a stage temperature of 1.5 K. We are continuing to develop the cryo-microscope and have developed a cryo-microscope equipped with a superfluid helium stage and new cryo-transfer device.The New cryo-microscope achieves not only improved resolution but also increased operational ease. The construction of the new super-fluid helium stage is shown in Fig. 1, where the cross sectional structure is shown parallel to an electron beam path. The capacities of LN2 tank, LHe tank and the pot are 1400 ml, 1200 ml and 3 ml, respectively. Their surfaces are placed with gold to minimize thermal radiation. Consumption rates of liquid nitrogen and liquid helium are 170 ml/hour and 140 ml/hour, respectively. The working time of this stage is more than 7 hours starting from full LN2 and LHe tanks. Instrumental resolution of our cryo-stage cooled to 4.2 K was confirmed to be 0.20 nm by an optical diffraction pattern from the image of a chlorinated copper-phthalocyanine crystal. The image and the optical diffraction pattern are shown in Fig. 2 a, b, respectively.


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