Calculating Reliable Gibbs Free Energies for Formation of Gas-Phase Clusters that Are Critical for Atmospheric Chemistry: (H2SO4)3

2021 ◽  
Vol 125 (15) ◽  
pp. 3169-3176
Author(s):  
Luke A. Kurfman ◽  
Tuguldur T. Odbadrakh ◽  
George C. Shields
Keyword(s):  
Gas Phase ◽  
Atmospheric Chemistry ◽  
Free Energies ◽  
Gas Phase Clusters

2-Deoxyribose Radicals in the Gas Phase and Aqueous Solution. Transient Intermediates of Hydrogen Atom Abstraction from 2-Deoxyribofuranose

2005 ◽  
Vol 70 (11) ◽  
pp. 1769-1786 ◽  
Author(s):  
Luc A. Vannier ◽  
Chunxiang Yao ◽  
František Tureček
Keyword(s):  
Aqueous Solution ◽  
Hydrogen Atom ◽  
Gas Phase ◽  
Computational Study ◽  
Hydrogen Atom Abstraction ◽  
Oh Radical ◽  
Free Energies ◽  
Intramolecular Hydrogen ◽  
Solvation Free Energies ◽  
Transient Intermediates

A computational study at correlated levels of theory is reported to address the structures and energetics of transient radicals produced by hydrogen atom abstraction from C-1, C-2, C-3, C-4, C-5, O-1, O-3, and O-5 positions in 2-deoxyribofuranose in the gas phase and in aqueous solution. In general, the carbon-centered radicals are found to be thermodynamically and kinetically more stable than the oxygen-centered ones. The most stable gas-phase radical, 2-deoxyribofuranos-5-yl (5), is produced by H-atom abstraction from C-5 and stabilized by an intramolecular hydrogen bond between the O-5 hydroxy group and O-1. The order of radical stabilities is altered in aqueous solution due to different solvation free energies. These prefer conformers that lack intramolecular hydrogen bonds and expose O-H bonds to the solvent. Carbon-centered deoxyribose radicals can undergo competitive dissociations by loss of H atoms, OH radical, or by ring cleavages that all require threshold dissociation or transition state energies >100 kJ mol-1. This points to largely non-specific dissociations of 2-deoxyribose radicals when produced by exothermic hydrogen atom abstraction from the saccharide molecule. Oxygen-centered 2-deoxyribose radicals show only marginal thermodynamic and kinetic stability and are expected to readily fragment upon formation.

scholarly journals Application of random forest regression to the calculation of gas-phase chemistry within the GEOS-Chem chemistry model v10

2019 ◽  
Vol 12 (3) ◽  
pp. 1209-1225 ◽  
Author(s):  
Christoph A. Keller ◽  
Mat J. Evans
Keyword(s):  
Machine Learning ◽  
Random Forest ◽  
Gas Phase ◽  
Atmospheric Chemistry ◽  
Random Forest Regression ◽  
Data Set ◽  
Gas Phase Chemistry ◽  
Chemical Conditions ◽  
Phase Chemistry ◽  
The Impact

Abstract. Atmospheric chemistry models are a central tool to study the impact of chemical constituents on the environment, vegetation and human health. These models are numerically intense, and previous attempts to reduce the numerical cost of chemistry solvers have not delivered transformative change. We show here the potential of a machine learning (in this case random forest regression) replacement for the gas-phase chemistry in atmospheric chemistry transport models. Our training data consist of 1 month (July 2013) of output of chemical conditions together with the model physical state, produced from the GEOS-Chem chemistry model v10. From this data set we train random forest regression models to predict the concentration of each transported species after the integrator, based on the physical and chemical conditions before the integrator. The choice of prediction type has a strong impact on the skill of the regression model. We find best results from predicting the change in concentration for long-lived species and the absolute concentration for short-lived species. We also find improvements from a simple implementation of chemical families (NOx = NO + NO2). We then implement the trained random forest predictors back into GEOS-Chem to replace the numerical integrator. The machine-learning-driven GEOS-Chem model compares well to the standard simulation. For ozone (O3), errors from using the random forests (compared to the reference simulation) grow slowly and after 5 days the normalized mean bias (NMB), root mean square error (RMSE) and R2 are 4.2 %, 35 % and 0.9, respectively; after 30 days the errors increase to 13 %, 67 % and 0.75, respectively. The biases become largest in remote areas such as the tropical Pacific where errors in the chemistry can accumulate with little balancing influence from emissions or deposition. Over polluted regions the model error is less than 10 % and has significant fidelity in following the time series of the full model. Modelled NOx shows similar features, with the most significant errors occurring in remote locations far from recent emissions. For other species such as inorganic bromine species and short-lived nitrogen species, errors become large, with NMB, RMSE and R2 reaching >2100 % >400 % and <0.1, respectively. This proof-of-concept implementation takes 1.8 times more time than the direct integration of the differential equations, but optimization and software engineering should allow substantial increases in speed. We discuss potential improvements in the implementation, some of its advantages from both a software and hardware perspective, its limitations, and its applicability to operational air quality activities.

THEORETICAL CALCULATION OF pKb VALUES FOR ANILINES AND SULFONAMIDE DRUGS IN AQUEOUS SOLUTION

2012 ◽  
Vol 11 (02) ◽  
pp. 283-295 ◽  
Author(s):  
BAHRAM GHALAMI-CHOOBAR ◽  
ALI GHIAMI-SHOMAMI ◽  
PARIA NIKPARSA
Keyword(s):  
Gas Phase ◽  
Continuum Model ◽  
Correlation Equation ◽  
Polarizable Continuum Model ◽  
Free Energies ◽  
Pcm Model ◽  
Solvation Models ◽  
Polarizable Continuum ◽  
Better Than ◽  
Good Agreement

In this work, calculations of p K b values have been performed for aniline and its substituted derivatives and sulfonamide drugs by using Gaussian 98 software package. Gas-phase energies were calculated with HF /6-31 G ** and B3LYP /6-31 G ** levels of theory. Free energies of solvation have been computed using the polarizable continuum model (PCM), conductor-like polarizable continuum model (CPCM) and the integral equation formalism-polarizable continuum model (IEFPCM) at the same levels which have been used for geometry determination in the gas-phase. The results show that the calculated p K b values using the B3LYP /6-31 G ** are better than those using the corresponding HF /6-31 G **. At first, the correlation equation was found to determine the p K b values of the investigated anilines. Then, this correlation equation was used to calculate the p K b values of the sulfonamide drugs. The results obtained indicate that the PCM model is a suitable solvation model for calculating p K b values in comparison to the other solvation models. For the investigated compounds a good agreement between the experimental and the calculated p K b values was also observed.

Free energies and enthalpies of possible gas phase and surface reactions for preparation of CuInSe2

1991 ◽  
Vol 52 (8) ◽  
pp. 947-961 ◽  
Author(s):  
David Cahen ◽  
Rommel Noufi
Keyword(s):  
Gas Phase ◽  
Surface Reactions ◽  
Free Energies

Atmospheric chemistry of trans-CF3CHCHCl: Kinetics of the gas-phase reactions with Cl atoms, OH radicals, and O3

2008 ◽  
Vol 199 (1) ◽  
pp. 92-97 ◽  
Author(s):  
M.P. Sulbaek Andersen ◽  
E.J.K. Nilsson ◽  
O.J. Nielsen ◽  
M.S. Johnson ◽  
M.D. Hurley ◽  
...  
Keyword(s):  
Gas Phase ◽  
Atmospheric Chemistry ◽  
Oh Radicals ◽  
Gas Phase Reactions ◽  
Kinetics Of ◽  
Cl Atoms

Pyrolysis of Methane to Higher Hydrocarbons: A Thermodynamic Study

1989 ◽  
Vol 42 (10) ◽  
pp. 1655 ◽  
Author(s):  
FP Larkins ◽  
AZ Khan
Keyword(s):  
Gas Phase ◽  
Pressure Range ◽  
Solid Carbon ◽  
Free Energies ◽  
Oxidation Of Methane ◽  
Conversion Of Methane ◽  
Equilibrium Conversion ◽  
Benzene Toluene ◽  
Higher Hydrocarbons ◽  
The Individual

Some basic thermodynamic parameters such as Gibbs free energies, enthalpies of reactions and equilibrium compositions of products from the pyrolysis and partial oxidation of methane to higher hydrocarbons in the gas phase have been determined within a consistent framework for the temperature range 800-1500 K and the pressure range 0.1-3 MPa , by using the CSIRO-SGTE THERMODATA system. It has been established that the pyrolysis of methane to higher hydrocarbons, e.g. acetylene, ethylene, ethane, prop-1-ene, propane, benzene, toluene, naphthalene, 1-methylnaphthalene and 2-methylnaphthalene, considered as separate reactions, is a highly endothermic reaction with the Gibbs free energies for the individual reactions being positive until 1300 K. The aromatics are thermodynamically most favoured with the equilibrium yields increasing with temperature. Addition of O2 lowers the heats of synthesis and the free energies for methane conversion but no enhancement in the equilibrium yields of hydrocarbons is observed. When solid carbon is allowed, it is the dominant product in all cases with the equilibrium yields for all hydrocarbons becoming negligible. Increasing the pressure at a particular temperature has more effect on the lowering of the equilibrium conversion of methane than on the suppression of solid carbon. Such data are valuable for understanding the conversion limits for methane into higher hydrocarbons.

Newly developed instrumentation for measuring highly oxidized molecules at atmospheric pressure

2021 ◽  
Author(s):  
Paap Koemets ◽  
Sander Mirme ◽  
Kuno Kooser ◽  
Heikki Junninen
Keyword(s):  
Gas Phase ◽  
Atmospheric Chemistry ◽  
Atmospheric Pressure ◽  
Chemical Ionization ◽  
Measurement Technology ◽  
Differential Mobility Analyzer ◽  
Neutral Cluster ◽  
Differential Mobility ◽  
Alpha Pinene ◽  
Ambient Measurements

&lt;p&gt;The Highly Oxidized Molecule Ion Spectrometer (HOMIS) is a novel instrument for measuring the total concentration of highly oxidized molecules (HOM-s) (Bianchi et al., 2019) at atmospheric pressure. The device combines a chemical ionization charger with a multi-channel differential mobility analyzer. The chemical ionization charger is based on the principles outlined by Eisele and Tanner (1993). The charger is attached to a parallel differential mobility analyzer identical to the ones used in the Neutral cluster and Air Ion Spectrometer (NAIS, Mirme 2011), but with modified sample and sheath air flow rates to improve the mobility resolution of the device. The complete mobility distribution in the range from 3.2 to 0.056 cm&lt;sup&gt;2&lt;/sup&gt;/V/s is measured simultaneously by 25 electrometers. The range captures the charger ions, monomers, dimers, trimers but also extends far towards larger particles to possibly detect larger HOM-s that have not been measured with existing instrumentation. The maximum time resolution of the device is 1 second allowing it to detect rapid changes in the sample. The device has been designed to be easy to use, require little maintenance and work reliably in various environments during long term measurements.&lt;/p&gt;&lt;p&gt;First results of the prototype were acquired from laboratory experiments and ambient measurements. Experiments were conducted at the Laboratory of Environmental Physics, University of Tartu. The sample was drawn from a reaction chamber where alpha-pinene and ozone were introduced. Initial results show a good response when concentrations of alpha-pinene and ozone were changed.&amp;#160;&lt;/p&gt;&lt;p&gt;Ambient measurements were conducted at the SMEAR Estonia measurement station in a hemiboreal forest for 10 days in the spring and two months in the winter of 2020. The HOMIS measurements were performed together with a CI-APi-TOF (Jokinen et al., 2012).&lt;/p&gt;&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;References:&lt;/p&gt;&lt;p&gt;Bianchi, F., Kurt&amp;#233;n, T., Riva, M., Mohr, C., Rissanen, M. P., Roldin, P., Berndt, T., Crounse, J. D., Wennberg, P. O., Mentel, T. F., Wildt, J., Junninen, H., Jokinen, T., Kulmala, M., Worsnop, D. R., Thornton, J. A., Donahue, N., Kjaergaard, H. G. and Ehn, M. (2019), &amp;#8220;Highly Oxygenated Organic Molecules (HOM) from Gas-Phase Autoxidation Involving Peroxy Radicals: A Key Contributor to Atmospheric Aerosol&amp;#8221;, Chemical Reviews, 119, 6, 3472&amp;#8211;3509&lt;/p&gt;&lt;p&gt;Eisele, F. L., Tanner D. J. (1993), &amp;#8220;Measurement of the gas phase concentration of H2SO4 and methane sulfonic acid and estimates of H2SO4 production and loss in the atmosphere&amp;#8221;, JGR: Atmospheres, 98, 9001-9010&lt;/p&gt;&lt;p&gt;Jokinen T., Sipil&amp;#228; M., Junninen H., Ehn M., L&amp;#246;nn G., Hakala J., Pet&amp;#228;j&amp;#228; T., Mauldin III R. L., Kulmala M., and Worsnop D. R. (2012), &amp;#8220;Atmospheric sulphuric acid and neutral cluster measurements using CI-APi-TOF&amp;#8221;, Atmospheric Chemistry and Physics, 12, 4117&amp;#8211;4125&lt;/p&gt;&lt;p&gt;Mirme, S. (2011), &amp;#8220;Development of nanometer aerosol measurement technology&amp;#8221;, Doctoral thesis, University of Tartu&lt;/p&gt;

Metal-Catalyzed Polymerization within Gas Phase Clusters: Al+/t-BuCl/Isobutylene System

1995 ◽  
Vol 99 (15) ◽  
pp. 5283-5290 ◽  
Author(s):  
George M. Daly ◽  
M. Samy El-Shall
Keyword(s):  
Gas Phase ◽  
Gas Phase Clusters ◽  
Metal Catalyzed ◽  
Catalyzed Polymerization

scholarly journals Evaluated kinetic and photochemical data for atmospheric chemistry: Volume II – reactions of organic species

2005 ◽  
Vol 5 (4) ◽  
pp. 6295-7168 ◽  
Author(s):  
R. Atkinson ◽  
D. L. Baulch ◽  
R. A. Cox ◽  
J. N. Crowley ◽  
R. F. Hampson ◽  
...  
Keyword(s):  
Kinetic Parameters ◽  
Gas Phase ◽  
Atmospheric Chemistry ◽  
Kinetic Data ◽  
Photochemical Reactions ◽  
Data Evaluation ◽  
Organic Species ◽  
Summary Sheet

Abstract. This article, the second in the series, presents kinetic and photochemical data evaluated by the IUPAC Subcommittee on Gas Kinetic Data Evaluation for Atmospheric Chemistry. It covers the gas phase and photochemical reactions of Organic species, which were last published in 1999, and were updated on the IUPAC website in late 2002. The article consists of a summary sheet, containing the recommended kinetic parameters for the evaluated reactions, and eight appendices containing the data sheets, which provide information upon which the recommendations are made.

Early Stages of Styrene−Isoprene Copolymerization in Gas Phase Clusters Probed by Resonance Enhanced Multiphoton Ionization

2006 ◽  
Vol 110 (13) ◽  
pp. 4296-4298 ◽  
Author(s):  
Hatem Mahmoud ◽  
Igor N. Germanenko ◽  
M. Samy El-Shall
Keyword(s):  
Gas Phase ◽  
Multiphoton Ionization ◽  
Gas Phase Clusters ◽  
Early Stages
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