Molecular analysis of 23 Pakistani families with autosomal recessive primary microcephaly using targeted next-generation sequencing

2016 ◽  
Vol 62 (2) ◽  
pp. 299-304 ◽  
Author(s):  
Rongrong Wang ◽  
Amjad Khan ◽  
Shirui Han ◽  
Xue Zhang
Keyword(s):  
Next Generation Sequencing ◽  
Molecular Analysis ◽  
Autosomal Recessive ◽  
Next Generation ◽  
Primary Microcephaly ◽  
Targeted Next Generation Sequencing ◽  
Autosomal Recessive Primary Microcephaly ◽  
Pakistani Families ◽  
Generation Sequencing

scholarly journals Targeted Next Generation Sequencing Identifies Novel Mutations inRP1as a Relatively Common Cause of Autosomal Recessive Rod-Cone Dystrophy

2015 ◽  
Vol 2015 ◽  
pp. 1-11 ◽  
Author(s):  
Said El Shamieh ◽  
Elise Boulanger-Scemama ◽  
Marie-Elise Lancelot ◽  
Aline Antonio ◽  
Vanessa Démontant ◽  
...  
Keyword(s):  
Next Generation Sequencing ◽  
Autosomal Recessive ◽  
Cone Dystrophy ◽  
Next Generation ◽  
Prevalence Studies ◽  
Targeted Next Generation Sequencing ◽  
Retinal Disorders ◽  
Inherited Retinal Disorders ◽  
Generation Sequencing ◽  
Index Cases

We report ophthalmic and genetic findings in families with autosomal recessive rod-cone dystrophy (arRCD) andRP1mutations. Detailed ophthalmic examination was performed in 242 sporadic and arRCD subjects. Genomic DNA was investigated using our customized next generation sequencing panel targeting up to 123 genes implicated in inherited retinal disorders. Stringent filtering coupled with Sanger sequencing and followed by cosegregation analysis was performed to confirm biallelism and the implication of the most likely disease causing variants. Sequencing identified 9RP1mutations in 7 index cases. Eight of the mutations were novel, and all cosegregated with severe arRCD phenotype, found associated with additional macular changes. Among the identified mutations, 4 belong to a region, previously associated with arRCD, and 5 others in a region previously associated with adRCD. Our prevalence studies showed thatRP1mutations account for up to 2.5% of arRCD. These results point out for the necessity of sequencingRP1when genetically investigating sporadic and arRCD. It further highlights the interest of unbiased sequencing technique, which allows investigating the implication of the same gene in different modes of inheritance. Finally, it reports that different regions ofRP1can also lead to arRCD.

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