Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

Nature ◽  
2021 ◽  
Author(s):  
Tongtong Zhao ◽  
Zachary D. Chiang ◽  
Julia W. Morriss ◽  
Lindsay M. LaFave ◽  
Evan M. Murray ◽  
...  
Keyword(s):  
Cancers ◽  
2021 ◽  
Vol 13 (14) ◽  
pp. 3587
Author(s):  
Benjamin Lebecque ◽  
Céline Bourgne ◽  
Véronique Vidal ◽  
Marc G. Berger

Chronic Myeloid Leukemia (CML) is a model to investigate the impact of tumor intra-clonal heterogeneity in personalized medicine. Indeed, tyrosine kinase inhibitors (TKIs) target the BCR-ABL fusion protein, which is considered the major CML driver. TKI use has highlighted the existence of intra-clonal heterogeneity, as indicated by the persistence of a minority subclone for several years despite the presence of the target fusion protein in all cells. Epigenetic modifications could partly explain this heterogeneity. This review summarizes the results of DNA methylation studies in CML. Next-generation sequencing technologies allowed for moving from single-gene to genome-wide analyses showing that methylation abnormalities are much more widespread in CML cells. These data showed that global hypomethylation is associated with hypermethylation of specific sites already at diagnosis in the early phase of CML. The BCR-ABL-independence of some methylation profile alterations and the recent demonstration of the initial intra-clonal DNA methylation heterogeneity suggests that some DNA methylation alterations may be biomarkers of TKI sensitivity/resistance and of disease progression risk. These results also open perspectives for understanding the epigenetic/genetic background of CML predisposition and for developing new therapeutic strategies.


2008 ◽  
Vol 7 (6) ◽  
pp. 359-363 ◽  
Author(s):  
Sow-Hsong Kuo ◽  
Jin-Chuan Sheu ◽  
Ding-Shinn Chen ◽  
Juei-Low Sung ◽  
Chi-Chung Lin ◽  
...  

2011 ◽  
Vol 5 (S8) ◽  
Author(s):  
Kim C O’Connor ◽  
Katie C Russell ◽  
Donald G Phinney ◽  
Michelle R Lacey ◽  
Bonnie L Barrilleaux ◽  
...  

Yeast ◽  
2021 ◽  
Author(s):  
Hanna Viktória Rácz ◽  
Fezan Mukhtar ◽  
Alexandra Imre ◽  
Zoltán Rádai ◽  
Andreas Károly Gombert ◽  
...  
Keyword(s):  

1984 ◽  
Vol 97 (5) ◽  
pp. 635-638
Author(s):  
S. M. Terekhov ◽  
Kh. A. Gatsadze ◽  
K. N. Grinberg
Keyword(s):  

Development ◽  
1993 ◽  
Vol 118 (1) ◽  
pp. 175-192 ◽  
Author(s):  
S.E. Acklin ◽  
D. van der Kooy

A double-labeling technique, combining retroviral tagging of individual cell lines (one clone per brain hemisphere) with the simultaneous [3H]thymidine-labeling of dividing cells in S phase, was used to study proliferation characteristics of individual precursor cell lines in the germinal zone of the developing rat forebrain. The cortical germinal zone was found to be segregated into three spatially distinct horizontal populations of precursor cell lineages, which differed in cell cycle kinetics, amount of cell death, and synchronous versus asynchronous mode of proliferation. The striatal germinal zone demonstrated a similar heterogeneity in the cell cycle characteristics of proliferating clones, but did not show nearly as distinct a spatial segregation of these different populations. The results demonstrate the clonal heterogeneity among precursor populations in the telencephalon and the differential spatial organization of the cortical and the striatal germinal zones. This germinal zone heterogeneity may predict some of the differences found among cellular phenotypes in the adult forebrain.


2012 ◽  
Vol 54 (5) ◽  
pp. 1056-1060 ◽  
Author(s):  
Dana Dvorakova ◽  
Zdenek Racil ◽  
Marek Borsky ◽  
Blanka Robesova ◽  
Ivana Jeziskova ◽  
...  

Stem Cells ◽  
2010 ◽  
Vol 28 (4) ◽  
pp. 788-798 ◽  
Author(s):  
Katie C. Russell ◽  
Donald G. Phinney ◽  
Michelle R. Lacey ◽  
Bonnie L. Barrilleaux ◽  
Kristin E. Meyertholen ◽  
...  

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