scholarly journals Niche partitioning of microbial communities in riverine floodplains

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Marc Peipoch ◽  
Scott R. Miller ◽  
Tiago R. Antao ◽  
H. Maurice Valett

Abstract Riverine floodplains exhibit high floral and faunal diversity as a consequence of their biophysical complexity. Extension of such niche partitioning processes to microbial communities is far less resolved or supported. Here, we evaluated the responses of aquatic biofilms diversity to environmental gradients across ten riverine floodplains with differing degrees of flow alteration and habitat diversity to assess whether complex floodplains support biofilm communities with greater biodiversity and species interactions. No significant evidence was found to support a central role for habitat diversity in promoting microbial diversity across 116 samples derived from 62 aquatic habitats, as neither α (H’: 2.8–4.1) nor β (Sørensen: 0.3–0.39) diversity were positively related to floodplain complexity across the ten floodplains. In contrast, our results documented the sensitivity of biofilm communities to regional templates manifested as gradients of carbon, nitrogen, and phosphorous availability. Large-scale conditions reflecting nitrogen limitation increased the relative abundance of N-fixing cyanobacteria (up to 0.34 as fraction of total reads), constrained the total number of interactions among bacterial taxa, and reinforced negative over positive interactions, generating unique microbial communities and networks that reflect large-scale species sorting in response to regional geochemical gradients.

2015 ◽  
Author(s):  
Anna M. O’Brien ◽  
Ruairidh J.H. Sawers ◽  
Jeffrey Ross-Ibarra ◽  
Sharon Y. Strauss

AbstractThe outcomes of many species interactions are conditional on the environments in which they occur. A common pattern is that outcomes grade from being more positive under stressful conditions to more antagonistic or neutral under benign conditions. The evolutionary implications of conditionality in interactions have received much less attention than the documentation of conditionality itself, with a few notable exceptions. Here, we predict patterns of adaptation and co-adaptation between partners along abiotic gradients, positing that when interactions become more positive in stressful environments, fitness outcomes for mutations affecting interactions align across partners and selection should favor greater mutualistic adap-tation and co-adaptation between interacting species. As a corollary, in benign environments, if interactions are strongly antagonistic, we predict antagonistic co-adaptation resulting in Red Queen or arms-race dynamics, or reduction of antagonism through character displacement and niche partitioning. We predict no adaptation if interactions are more neutral. We call this the CoCoA hypothesis: (Co)-adaptation and Conditionality across Abiotic gradients. We describe experimental designs and statistical models that allow testing predictions of CoCoA, with a focus on positive interactions. While only one study has included all the elements to test CoCoA, we briefly review the literature and summarize study findings relevant to CoCoA and highlight opportunities to test CoCoA further.


2019 ◽  
Author(s):  
Sonja Blasche ◽  
Yongkyu Kim ◽  
Ruben Mars ◽  
Eleni Kafkia ◽  
Maria Maansson ◽  
...  

SummaryMicrobial communities in nature often feature complex compositional dynamics yet also stable coexistence of diverse species. The mechanistic underpinnings of such dynamic stability remain unclear as system-wide studies have been limited to small engineered communities or synthetic assemblies. Here we show how kefir, a natural milk-fermenting community, realizes stable coexistence through spatio-temporal orchestration of species and metabolite dynamics. During milk fermentation, kefir grains (a polysaccharide matrix synthesized by kefir microbes) grow in mass but remain unchanged in composition. In contrast, the milk is colonized in a dynamic fashion with early members opening metabolic niches for the followers. Through large-scale mapping of metabolic preferences and inter-species interactions, we show how microbes poorly suited for milk survive in, and even dominate, the community through metabolic cooperation and uneven partitioning between the grain and the liquid phase. Overall, our findings reveal how spatio-temporal dynamics promote stable coexistence and have implications for deciphering and modulating complex microbial ecosystems.


Ecology ◽  
2012 ◽  
Author(s):  
Christopher J. Lortie

Species interactions are a cornerstone of ecological research wherein the effects of an individual of one species on another individual, frequently a different species, are studied. Within versus between species interactions are also commonly contrasted as a means to infer relative importance, but the majority of theory advances, at least at the community level, are associated with interactions between individuals of different species. Interactions can range from positive to negative, and effects are measured at all levels of development, or life history stages, of an organism. Positive interactions have been extensively studied in both population and community ecology. Facilitation, however, is a relatively specific term that has evolved primarily to describe positive plant–plant interactions (see Defining Facilitation). Facilitation, or positive interactions, is a relatively recent subset of these species interactions in general, including related processes, such as competition, mutualism, and parasitism. Facilitation is best viewed as the antithesis of the plant competition literature, as it shares many of the main attributes, both in terms of scope and approach, and arose as a comparator to this research. Facilitation studies mainly refer to positive plant–plant interactions, as the term was proposed in the plant literature and extensively used to describe interactions that include a positive effect of one species on another. Mutualism and parasitism research is often plant–insect based and formally identifies the reciprocal effect in the interaction, that is, (+, +) in mutualism and (+,−) in parasitism, whereas facilitation studies are generally (+,0) or (+,?), with the second effect often unreported. Interactions that include at least one negative interaction are usually described as competition in the plant literature and do not apply the term facilitation (although the frequency of both being discussed concomitantly is increasing). Hence, the term facilitation, owing to historical use, describes the subset of interactions that are (+,0) and is mostly specific to within plants, although its usage is expanding. The research on facilitation has most likely peaked, similar to plant competition studies, in that facilitation has been clearly established as an important process in the formation of plant communities. Additional studies simply demonstrating facilitation are increasing unlikely to be present in the literature. That said, the implications to theory and other, more nuanced aspects of interaction, such as context dependence, shifting balances, and importance of the environment, as they relate to facilitation, are still largely unexplored. In the early 21st century the most contentious debates, with respect to facilitation, center on either disagreement concerning what a community is and whether research should be conducted at this scale or on how to use environmental gradients (i.e., stress) most effectively. Both of these topics are described herein, with readings also included on Historical Background, Experimental and Analytical Approaches, Evolution, other taxa, and Applications.


2020 ◽  
Author(s):  
Zheng Zhang ◽  
Hongjun Li ◽  
Wenli Shen ◽  
Xiongfeng Du ◽  
Shuzhen Li ◽  
...  

Abstract BackgroundThe marine autotrophic phytoplankton is responsible for approximately half of global primary production on Earth, and as the planktonic consumers, the heterotrophic zooplankton could link the phytoplankton and higher trophic level to complete the aquatic Food Web. Despite the interaction between phytoplankton and zooplankton has played important roles in speciation and ecosystem function, little is known about the spatial patterns of their interactions at the continental scale.ResultsHere, we collected 251 seawater samples along 13,000 km of Chinese coastline, and microscopically investigated the spatial gradient patterns of phytoplanktonic and zooplanktonic diversities. In total, 307 phytoplanktonic and 311 zooplanktonic species were visually identified. The distance-decay relationships showed higher turnover rates for zooplankton than phytoplankton, indicating zooplankton had more divergent compositions across larger distances. Furthermore, the zooplankton-phytoplankton interaction networks demonstrated more complex and numerous connections along the southern coast than in the north, suggesting the interactions between these two major planktonic groups had a geographic spatial pattern. The types of planktonic interactions changed along the latitudinal gradient, with positive interactions dominant in northern and middle regions, while the percentage of positive and negative interactions were approximately equal in the southern latitudinal region. Additionally, some particular association between zooplanktonic and phytoplanktonic groups were found to be localized in specific regions, such as autotrophic C. lorenzianus was only associated with heterotrophic Copepoda in northern region, and C. oculus-iridis was only associated with Copepoda and Chaetognatha in the middle (ECS) and southern (SCS) respectively.ConclusionsWe demonstrate here that not only the planktonic biodiversity and community structure exhibited a clear spatial pattern, but also the interaction between phytoplankton and zooplankton also changed with spatial variation. Our results provide a valuable ecological perspective to the biogeography patterns of coastal plankton along the large-scale spatial gradients, and have important implications for understanding how complex planktonic species interactions changed with location variation.


2018 ◽  
Author(s):  
Paul M. Berube ◽  
Anna Rasmussen ◽  
Rogier Braakman ◽  
Ramunas Stepanauskas ◽  
Sallie W. Chisholm

ABSTRACTIntraspecific trait variability has important consequences for the function and stability of marine ecosystems. The marine cyanobacterium Prochlorococcus is a useful model system for understanding how trait variability emerges within microbial species: Its functional diversity is overlaid on measurable environmental gradients, providing a powerful lens into large-scale evolutionary processes. Here we examine variation in the ability to use nitrate across hundreds of Prochlorococcus genomes to better understand the modes of evolution influencing the allocation of ecologically important functions within microbial species. We find that nitrate assimilation genes are absent in basal lineages of Prochlorococcus but occur at an intermediate frequency that is randomly distributed within recently emerged clades. The distribution of nitrate assimilation genes within clades appears largely governed by vertical inheritance, stochastic gene loss, and homologous recombination among closely related cells. By mapping this process onto a model of Prochlorococcus’ macroevolution, we propose that niche-constructing adaptive radiations and subsequent niche partitioning set the stage for loss of nitrate assimilation genes from basal lineages as they specialized to lower light levels. Retention of these genes in recently emerged lineages has likely been facilitated by selection as they sequentially partitioned into niches where nitrate assimilation conferred a fitness benefit.


2019 ◽  
Author(s):  
Alan Vergnes ◽  
Quentin Rome ◽  
Inès Gayral ◽  
Colin Fontaine

AbstractRecent call has been made to study the biogeography of species interactions in order to better understand ecosystems’ states and processes, as well as their response to global anthropogenic disturbances. Ants (Formicidae) are a dominant group of arthropods with a central role in ecosystem functioning. Many ant species, those feeding on liquids, are floricolous and consume nectar. The biogeography of ant-flower interactions is still poorly studied and especially in temperate area. Here we quantify variations in ant-flower interaction frequency in response to latitudinal and urbanization gradients at a country scale.We used data from a flower-visitor monitoring program that includes pictures on 2511 flower plants across Continental France (Mainland) and over 4 years. We analysed the occurrence of the ant-flower interactions along two gradients: latitude and urbanization, this for 10 ant taxa corresponding to different taxonomical level (from family to species).Ants visited 26 % of the sampled plants. Most of the observed ant-flower interaction involved the subfamily Formicinae (82.1 %), followed by Myrmicinae and Dolichoderinae (6.9 % and 4.6 % respectively). Globally, (i) the probability of occurrence was negatively related to latitudes (ii) and to urbanization at lower latitude. (iii) Responses to latitude among sub families, genus and species level responses were segregated and taxonomically aggregated.At lower taxonomic levels we found clear latitudinal niche partitioning among ant taxa suggesting that competition, on both evolutionary and ecological time scales, is a major process structuring ant communities. Finally, our results highlight that the effects of large scale perturbation like urbanization can vary and affect latitudinal gradient.


2015 ◽  
Vol 282 (1808) ◽  
pp. 20150520 ◽  
Author(s):  
Jay J. Falk ◽  
Hannah M. ter Hofstede ◽  
Patricia L. Jones ◽  
Marjorie M. Dixon ◽  
Paul A. Faure ◽  
...  

Many predators and parasites eavesdrop on the communication signals of their prey. Eavesdropping is typically studied as dyadic predator–prey species interactions; yet in nature, most predators target multiple prey species and most prey must evade multiple predator species. The impact of predator communities on prey signal evolution is not well understood. Predators could converge in their preferences for conspicuous signal properties, generating competition among predators and natural selection on particular prey signal features. Alternatively, predator species could vary in their preferences for prey signal properties, resulting in sensory-based niche partitioning of prey resources. In the Neotropics, many substrate-gleaning bats use the mate-attraction songs of male katydids to locate them as prey. We studied mechanisms of niche partitioning in four substrate-gleaning bat species and found they are similar in morphology, echolocation signal design and prey-handling ability, but each species preferred different acoustic features of male song in 12 sympatric katydid species. This divergence in predator preference probably contributes to the coexistence of many substrate-gleaning bat species in the Neotropics, and the substantial diversity in the mate-attraction signals of katydids. Our results provide insight into how multiple eavesdropping predator species might influence prey signal evolution through sensory-based niche partitioning.


2007 ◽  
Vol 67 (3) ◽  
pp. 403-411 ◽  
Author(s):  
WG. Silva ◽  
JP. Metzger ◽  
S. Simões ◽  
C Simonetti

Several studies suggest that, on a large scale, relief conditions influence the Atlantic Forest cover. The aim of this work was to explore these relationships on a local scale, in Caucaia do Alto, on the Ibiúna Plateau. Within an area of about 78 km², the distribution of forest cover, divided into two successional stages, was associated with relief attribute data (slope, slope orientation and altitude). The mapping of the vegetation was based on the interpretation of stereoscopic pairs of aerial photographs, from April 2000, on a scale of 1:10,000, while the relief attributes were obtained by geoprocessing from digitalized topographic maps on a scale of 1:10,000. Statistical analyses, based on qui-square tests, revealed that there was a more extensive forest cover, irrespective of the successional stage, in steeper areas (>10 degrees) located at higher altitudes (>923 m), but no influence of the slope orientation. There was no sign of direct influence of relief on the forest cover through environmental gradients that might have contributed to the forest regeneration. Likewise, there was no evidence that these results could have been influenced by the distance from roads or urban areas or with respect to permanent preservation areas. Relief seems to influence the forest cover indirectly, since agricultural land use is preferably made in flatter and lower areas. These results suggest a general distribution pattern of the forest remnants, independent of the scale of study, on which relief indirectly has a strong influence, since it determines human occupation.


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