Raman spectroscopy and artificial intelligence to predict the Bayesian probability of breast cancer

AbstractThis study addresses the core issue facing a surgical team during breast cancer surgery: quantitative prediction of tumor likelihood including estimates of prediction error. We have previously reported that a molecular probe, Laser Raman spectroscopy (LRS), can distinguish healthy and tumor tissue. We now report that combining LRS with two machine learning algorithms, unsupervised k-means and stochastic nonlinear neural networks (NN), provides rapid, quantitative, probabilistic tumor assessment with real-time error analysis. NNs were first trained on Raman spectra using human expert histopathology diagnostics as gold standard (74 spectra, 5 patients). K-means predictions using spectral data when compared to histopathology produced clustering models with 93.2–94.6% accuracy, 89.8–91.8% sensitivity, and 100% specificity. NNs trained on k-means predictions generated probabilities of correctness for the autonomous classification. Finally, the autonomous system characterized an extended dataset (203 spectra, 8 patients). Our results show that an increase in DNA|RNA signal intensity in the fingerprint region (600–1800 cm−1) and global loss of high wavenumber signal (2800–3200 cm−1) are particularly sensitive LRS warning signs of tumor. The stochastic nature of NNs made it possible to rapidly generate multiple models of target tissue classification and calculate the inherent error in the probabilistic estimates for each target.

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Raman Spectroscopy for Rapid Evaluation of Surgical Margins during Breast Cancer Lumpectomy

Scientific Reports ◽

10.1038/s41598-019-51112-0 ◽

2019 ◽

Vol 9 (1) ◽

Cited By ~ 8

Author(s):

Willie C. Zúñiga ◽

Veronica Jones ◽

Sarah M. Anderson ◽

Alex Echevarria ◽

Nathaniel L. Miller ◽

...

Keyword(s):

Breast Cancer ◽

Raman Spectroscopy ◽

Near Infrared ◽

Diagnostic Technique ◽

Laser Raman Spectroscopy ◽

Malignant Tissue ◽

Multivariate Statistical ◽

Current Generation ◽

Laser Raman ◽

Spectral Bands

Abstract Failure to precisely distinguish malignant from healthy tissue has severe implications for breast cancer surgical outcomes. Clinical prognoses depend on precisely distinguishing healthy from malignant tissue during surgery. Laser Raman spectroscopy (LRS) has been previously shown to differentiate benign from malignant tissue in real time. However, the cost, assembly effort, and technical expertise needed for construction and implementation of the technique have prohibited widespread adoption. Recently, Raman spectrometers have been developed for non-medical uses and have become commercially available and affordable. Here we demonstrate that this current generation of Raman spectrometers can readily identify cancer in breast surgical specimens. We evaluated two commercially available, portable, near-infrared Raman systems operating at excitation wavelengths of either 785 nm or 1064 nm, collecting a total of 164 Raman spectra from cancerous, benign, and transitional regions of resected breast tissue from six patients undergoing mastectomy. The spectra were classified using standard multivariate statistical techniques. We identified a minimal set of spectral bands sufficient to reliably distinguish between healthy and malignant tissue using either the 1064 nm or 785 nm system. Our results indicate that current generation Raman spectrometers can be used as a rapid diagnostic technique distinguishing benign from malignant tissue during surgery.

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Raman Spectroscopy and Artificial Intelligence to Predict the Bayesian Probability of Breast Cancer

Biophysical Journal ◽

10.1016/j.bpj.2019.11.355 ◽

2020 ◽

Vol 118 (3) ◽

pp. 32a ◽

Cited By ~ 1

Author(s):

Ragini Kothari ◽

Veronica Jones ◽

Dominique Mena ◽

Viviana Bermudez ◽

Youkang Shon ◽

...

Keyword(s):

Breast Cancer ◽

Artificial Intelligence ◽

Raman Spectroscopy ◽

Bayesian Probability

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Review of Laser Raman Spectroscopy for Surgical Breast Cancer Detection: Stochastic Backpropagation Neural Networks

Sensors ◽

10.3390/s20216260 ◽

2020 ◽

Vol 20 (21) ◽

pp. 6260

Author(s):

Ragini Kothari ◽

Yuman Fong ◽

Michael C. Storrie-Lombardi

Keyword(s):

Breast Cancer ◽

Machine Learning ◽

Neural Networks ◽

Raman Spectroscopy ◽

Learning Strategies ◽

Breast Cancer Diagnosis ◽

Classification Performance ◽

Machine Learning Techniques ◽

Laser Raman Spectroscopy ◽

Laser Raman

Laser Raman spectroscopy (LRS) is a highly specific biomolecular technique which has been shown to have the ability to distinguish malignant and normal breast tissue. This paper discusses significant advancements in the use of LRS in surgical breast cancer diagnosis, with an emphasis on statistical and machine learning strategies employed for precise, transparent and real-time analysis of Raman spectra. When combined with a variety of “machine learning” techniques LRS has been increasingly employed in oncogenic diagnostics. This paper proposes that the majority of these algorithms fail to provide the two most critical pieces of information required by the practicing surgeon: a probability that the classification of a tissue is correct, and, more importantly, the expected error in that probability. Stochastic backpropagation artificial neural networks inherently provide both pieces of information for each and every tissue site examined by LRS. If the networks are trained using both human experts and an unsupervised classification algorithm as gold standards, rapid progress can be made understanding what additional contextual data is needed to improve network classification performance. Our patients expect us to not simply have an opinion about their tumor, but to know how certain we are that we are correct. Stochastic networks can provide that information.

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