scholarly journals Heritability and genetic correlations of plasma metabolites of pigs with production, resilience and carcass traits under natural polymicrobial disease challenge

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
E. Dervishi ◽  
T. Yang ◽  
M. K. Dyck ◽  
J. C. S. Harding ◽  
F. Fortin ◽  
...  
Keyword(s):  
Variance Components ◽  
Carcass Traits ◽  
Genetic Correlations ◽  
Growing Pigs ◽  
Plasma Metabolites ◽  
Phenotypic Correlation ◽  
Nursery Pigs ◽  
Polymicrobial Disease ◽  
Plasma Metabolite ◽  
Measures Of Performance

AbstractMetabolites in plasma of healthy nursery pigs were quantified using nuclear magnetic resonance. Heritabilities of metabolite concentration were estimated along with their phenotypic and genetic correlations with performance, resilience, and carcass traits in growing pigs exposed to a natural polymicrobial disease challenge. Variance components were estimated by GBLUP. Heritability estimates were low to moderate (0.11 ± 0.08 to 0.19 ± 0.08) for 14 metabolites, moderate to high (0.22 ± 0.09 to 0.39 ± 0.08) for 17 metabolites, and highest for l-glutamic acid (0.41 ± 0.09) and hypoxanthine (0.42 ± 0.08). Phenotypic correlation estimates of plasma metabolites with performance and carcass traits were generally very low. Significant genetic correlation estimates with performance and carcass traits were found for several measures of growth and feed intake. Interestingly the plasma concentration of oxoglutarate was genetically negatively correlated with treatments received across the challenge nursery and finisher (− 0.49 ± 0.28; P < 0.05) and creatinine was positively correlated with mortality in the challenge nursery (0.85 ± 0.76; P < 0.05). These results suggest that some plasma metabolite phenotypes collected from healthy nursery pigs are moderately heritable and genetic correlations with measures of performance and resilience after disease challenge suggest they may be potential genetic indicators of disease resilience.

scholarly journals Genetic analysis of disease resilience in wean-to-finish pigs from a natural disease challenge model

2020 ◽  
Vol 98 (8) ◽  
Author(s):  
Jian Cheng ◽  
Austin M Putz ◽  
John C S Harding ◽  
Michael K Dyck ◽  
Frederic Fortin ◽  
...  
Keyword(s):  
Feed Intake ◽  
Linear Models ◽  
Average Daily Gain ◽  
Genetic Correlations ◽  
Growing Pigs ◽  
Feed Conversion ◽  
Mixed Linear Models ◽  
Treatment Rate ◽  
Polymicrobial Disease ◽  
Indicator Traits

Abstract The objective was to estimate the genetic parameters of performance and resilience of growing pigs under disease. Data were from 3,139 Yorkshire × Landrace wean-to-finish pigs that were exposed to a natural polymicrobial disease challenge that was established by entering naturally infected animals into a nursery barn, targeting various viral and bacterial diseases. The challenge was maintained by entering batches of 60 or 75 healthy nursery pigs every 3 wk in a continuous flow system. Traits analyzed included average daily gain (ADG), feed intake (ADFI) and duration (ADFD); feed conversion ratio (FCR); residual feed intake (RFI); mortality (MOR); number of health treatments (TRT); health scores (HScore); carcass weight (CWT), back fat (CBF) and loin depth (CLD); dressing percentage (DRS); lean yield (LYLD); day-to-day variation in feed intake and duration (VARFI and VARDUR); and the proportion of off-feed days (OFFFI and OFFDUR). Analyses were performed by mixed linear models with genomic relationships. The resilience traits, such as TRT, MOR, and HScore, were lowly heritable (up to 0.15) but had high genetic correlations with each other. Performance traits, such as ADG, ADFI, ADFD, FCR, RFI, and carcass traits, were moderate to highly heritable (0.17 to 0.49). Heritabilities of resilience indicator traits such as OFF and VAR had low to moderate heritabilities (0.08 to 0.23) but were higher when based on duration vs. amount. ADFI had a low genetic correlation with ADFD (0.13). ADG in the challenge nursery had stronger negative genetic correlations with both TRT and MOR than ADG in the finisher (−0.37 to −0.74 vs. −0.15 to −0.56). ADFI and FCR had moderate negative (−0.21 to −0.39) and positive (0.34 to 0.49) genetic correlations, respectively, with TRT and MOR. ADFD and RFI had very low genetic correlations with TRT and MOR. CWT and DRS were moderately negatively correlated with TRT and MOR (−0.33 to −0.59). Resilience indicator traits based on feed intake or duration had moderate to high positive genetic correlations with TRT (0.18 to 0.81) and MOR (0.33 to 0.87). In conclusion, performance and resilience traits under a polymicrobial disease challenge are heritable and can be changed by selection. Phenotypes extracted from feed intake patterns can be used as genetic indicator traits for disease resilience. Most promising is day-to-day variation in intake duration, which had a sizeable heritability (0.23) and favorable genetic correlations with MOR (0.79) and treatment rate (0.20).

scholarly journals Genetic parameters for ultrasound-evaluated carcass and body traits in Anglo-Nubian goats

2020 ◽  
Vol 34 (1) ◽  
pp. 40-50
Author(s):  
Luiz AS Figueiredo-Filho ◽  
José LR Sarmento ◽  
José EG Campelo ◽  
Natanael PS Santos ◽  
Luciano S Sena ◽  
...  
Keyword(s):  
Body Weight ◽  
Body Size ◽  
Variance Components ◽  
Genetic Parameters ◽  
Carcass Traits ◽  
Genetic Correlations ◽  
Chest Circumference ◽  
Residual Variance ◽  
Breeding Programs ◽  
Meat Goat

Background: Meat goat breeding programs should prioritize the identification and selection of genetically superior animals for traits related to meat quality and carcass yield in order to increase the value of the final product. Objective: To estimate (co)variance components and genetic parameters for ultrasound-measured carcass traits, body size and body weight in AngloNubian breed goats raised in the Mid-North region of Brazil. Methods: (Co)variance components and genetic parameters were estimated using the single and two-trait animal model analyses via Bayesian inference for loin eye dimensions (area, length, and depth), sternal fat thickness, rump height, chest circumference and depth, leg perimeter, and body weight. Results: Heritability estimates were higher when two-trait analyses were used. This finding implies that it is possible to recover part of the additive genetic variance included in the residual variance due to the correlation between traits. Genetic correlations between carcass and body size traits showed different magnitudes. On the other hand, genetic correlations between the traits related to muscularity showed high magnitudes. Conclusions: Body weight was not a good indicator of muscularity; therefore, it is not recommended as a criterion for indirect selection to improve carcass traits of Anglo-Nubian goats. Leg perimeter and chest circumference may be important to construct selection indexes in meat goat breeding programs.

scholarly journals Realized Sampling Variances of Estimates of Genetic Parameters and the Difference Between Genetic and Phenotypic Correlations

Genetics ◽  
1996 ◽  
Vol 143 (3) ◽  
pp. 1409-1416 ◽  
Author(s):  
Kenneth R Koots ◽  
John P Gibson
Keyword(s):  
Genetic Correlation ◽  
Genetic Parameters ◽  
Genetic Parameter ◽  
Genetic Correlations ◽  
Phenotypic Correlation ◽  
Parameter Estimates ◽  
Sampling Variance ◽  
Phenotypic Correlations ◽  
Genetic And Phenotypic Correlations ◽  
Heritability Estimates

Abstract A data set of 1572 heritability estimates and 1015 pairs of genetic and phenotypic correlation estimates, constructed from a survey of published beef cattle genetic parameter estimates, provided a rare opportunity to study realized sampling variances of genetic parameter estimates. The distribution of both heritability estimates and genetic correlation estimates, when plotted against estimated accuracy, was consistent with random error variance being some three times the sampling variance predicted from standard formulae. This result was consistent with the observation that the variance of estimates of heritabilities and genetic correlations between populations were about four times the predicted sampling variance, suggesting few real differences in genetic parameters between populations. Except where there was a strong biological or statistical expectation of a difference, there was little evidence for differences between genetic and phenotypic correlations for most trait combinations or for differences in genetic correlations between populations. These results suggest that, even for controlled populations, estimating genetic parameters specific to a given population is less useful than commonly believed. A serendipitous discovery was that, in the standard formula for theoretical standard error of a genetic correlation estimate, the heritabilities refer to the estimated values and not, as seems generally assumed, the true population values.

scholarly journals Genetic Influences on the Covariance and Genetic Correlations in a Bivariate Twin Model: An Application to Well-Being

2021 ◽  
Author(s):  
Lianne P. de Vries ◽  
Toos C. E. M. van Beijsterveldt ◽  
Hermine Maes ◽  
Lucía Colodro-Conde ◽  
Meike Bartels
Keyword(s):  
Complex Traits ◽  
Educational Achievement ◽  
Genetic Correlations ◽  
Well Being ◽  
Genetic Influences ◽  
Phenotypic Correlation ◽  
Twin Model ◽  
Twin Models ◽  
Adolescent Twins ◽  
Depressed Symptoms

AbstractThe distinction between genetic influences on the covariance (or bivariate heritability) and genetic correlations in bivariate twin models is often not well-understood or only one is reported while the results show distinctive information about the relation between traits. We applied bivariate twin models in a large sample of adolescent twins, to disentangle the association between well-being (WB) and four complex traits (optimism, anxious-depressed symptoms (AD), aggressive behaviour (AGG), and educational achievement (EA)). Optimism and AD showed respectively a strong positive and negative phenotypic correlation with WB, the negative correlation of WB and AGG is lower and the correlation with EA is nearly zero. All four traits showed a large genetic contribution to the covariance with well-being. The genetic correlations of well-being with optimism and AD are strong and smaller for AGG and EA. We used the results of the models to explain what information is retrieved based on the bivariate heritability versus the genetic correlations and the (clinical) implications.

scholarly journals Comparison of two live-animal ultrasound systems for genetic evaluation of carcass traits in Angus cattle

2021 ◽  
Author(s):  
C J Duff ◽  
J H J van der Werf ◽  
P F Parnell ◽  
S A Clark
Keyword(s):  
Carcass Traits ◽  
Genetic Correlations ◽  
Subcutaneous Fat ◽  
Genetic Evaluation ◽  
Ultrasound Scan ◽  
Ultrasound Scanning ◽  
Eye Muscle ◽  
Angus Cattle ◽  
Breeding Objective ◽  
Two Systems

Abstract The improvement of carcass traits is an important breeding objective in beef cattle breeding programs. The most common way of selecting for improvement in carcass traits is via indirect selection using ultrasound scanning of selection candidates which are submitted to genetic evaluation programs. Two systems used to analyse ultrasound images to predict carcass traits are the Pie Medical Esaote Aquila (PIE) and Central Ultrasound Processing (CUP). This study compared the ability of the two systems to predict carcass traits for genetic evaluation in Australian Angus cattle. Genetic and phenotypic parameters were estimated using data from 1648 Angus steers which were ultrasound scanned twice with both systems, first at feedlot entry and then following 100 days in the feedlot. The traits interpreted from ultrasound scanning included eye muscle area (EMA), rib fat (RIB) rump fat (RUMP) and intramuscular fat (IMF). Abattoir carcass data were collected on all steers following the full feedlot feeding period of 285 days. For all ultrasound scan traits, CUP resulted in higher phenotypic and genetic variances compared to the PIE. For IMF, CUP had higher heritability at feedlot intake (0.51 for CUP compared to 0.37 for PIE) and after 100 days feeding (0.54 for CUP compared to 0.45 PIE). CUP predicted IMF also tended to have stronger correlations with the breeding objective traits of carcass IMF marbling traits, both genetically (ranging from 0.59 to 0.75 for CUP compared to 0.45 to 0.63 for PIE) and phenotypically (ranging from 0.27 to 0.43 for CUP compared to 0.19 to 0.28 for PIE). Ultrasound scan EMA were the only group of traits in which the heritabilities were higher for PIE (0.52 for PIE compared to 0.40 for CUP at feedlot intake and 0.46 for PIE compared to 0.43 for CUP at 100 days of feeding), however with similar relationships to the breeding objective carcass EMA observed. For subcutaneous fat traits of ultrasound RIB and RUMP, the heritabilites and genetic correlations to the related carcass traits were similar, with the exception being the higher heritability observed for CUP predicted RUMP at feedlot intake at 0.52 compared to 0.38 for PIE. The results from this study indicates that the CUP system, compared to PIE, provides an advantage for genetic evaluation of carcass traits in Angus cattle, particularly for the IMF and associated marbling traits.

scholarly journals Relationship between Temperament and Stage of Lactation, Productivity and Milk Composition of Dairy Cows

Animals ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1840
Author(s):  
Ramūnas Antanaitis ◽  
Vida Juozaitienė ◽  
Vesta Jonike ◽  
Vytenis Čukauskas ◽  
Danguolė Urbšienė ◽  
...  
Keyword(s):  
Milk Fat ◽  
Genetic Correlations ◽  
Subclinical Mastitis ◽  
Milk Composition ◽  
Cow Milk ◽  
Phenotypic Correlation ◽  
Protein Ratio ◽  
Stage Of Lactation ◽  
Milk Urea ◽  
Milk Performance

The aim of this study was to assess the relationship between temperament and milk performance in cows at different stages of lactation, describing their productivity, metabolic status and resistance to mastitis. This study showed that with increasing lactation, cows’ temperament indicators decreased (p < 0.001) and they became calmer. The highest temperament score on a five-point scale was found in cows between 45 and 100 days of lactation. In the group of pregnant cows, we found more cows (p = 0.005) with a temperament score of 1–2 compared with non-pregnant cows A normal temperament was usually detected in cows with lactose levels in milk of 4.60% or more and when the somatic cell count (SCC) values in cow milk were <100,000/mL and 100,000–200,000/mL, with a milk fat-to-protein ratio of 1.2. A larger number of more sensitive and highly aggressive cows was detected at a low milk urea level. In contrast to a positive phenotypic correlation (p < 0.05), this study showed a negative genetic correlation between the temperament of cows and milk yield (p < 0.001). Positive genetic correlations between temperament scores and milk somatic cells (p < 0.001) and milk fat-to-protein ratio (p < 0.05) were found to indicate a lower genetic predisposition in cows with a calmer temperament to subclinical mastitis and ketosis. On the other hand, the heritability of temperament (h2 = 0.044–0.100) showed that only a small part of the phenotypic changes in this indicator is associated with genetic factors.

scholarly journals 265 Evaluation of the genetic relationship amongst high elevation pulmonary arterial pressure, feedlot and carcass performance traits

2020 ◽  
Vol 98 (Supplement_4) ◽  
pp. 197-197
Author(s):  
Emma A Briggs ◽  
Scott Speidel ◽  
Mark Enns ◽  
Milt Thomas ◽  
Tim Holt
Keyword(s):  
Arterial Pressure ◽  
Genetic Relationship ◽  
Feed Intake ◽  
Pulmonary Arterial Pressure ◽  
Carcass Traits ◽  
Genetic Correlations ◽  
High Elevation ◽  
Pulmonary Arterial ◽  
Carcass Performance ◽  
Moderate Elevation

Abstract The objective of the study was to evaluate if a genetic relationship exists between pulmonary arterial pressure (PAP) measured at high elevation with traits associated with moderate elevation feedlot and carcass traits. For this analysis, PAP, feed intake, and carcass data were taken from 6,898, 558, and 1,627 animals, respectively. At an elevation of 2,115 m, PAP measurements were collected, then a selective group of steers was relocated to a moderate elevation feedlot (1,500 m) where feed intake data were collected. Genetic relationships were evaluated with 5-trait animal models using REML statistical analysis. For all traits in the analysis, fixed effects and contemporary groups were assigned as well as a direct genetic random effect. For weaning weight, a maternal permanent environmental effect was applied in the analysis. For PAP, the heritability estimate was 0.29 ± 0.03. Genetic correlations between PAP with feedlot traits was positive, with estimates of 0.34 ± 0.20 (average dry matter intake) and 0.05 ± 17 (average daily gain). The strongest genetic correlation between PAP and carcass performance traits were those of rib eye area (-0.30 ± 0.12) and calculated yield grade (0.29 ± 0.13). Genetic correlations between PAP and marbling score, back fat, or hot carcass weight were 0.00 ± 0.13, -0.07 ± 0.13, and 0.14 ± 0.10, respectively. These results suggest a favorable genetic relationship exists between PAP with feedlot and carcass traits.

Genetic importance of fat and eye muscle depth in Merino breeding programs

2016 ◽  
Vol 56 (4) ◽  
pp. 690 ◽  
Author(s):  
D. J. Brown ◽  
A. A. Swan
Keyword(s):  
Carcass Traits ◽  
Genetic Correlations ◽  
Fibre Diameter ◽  
Economic Index ◽  
Parasite Resistance ◽  
Eye Muscle ◽  
Breeding Programs ◽  
Dual Purpose ◽  
Internal Parasite ◽  
Reproduction Traits

Australian Merino breeders have traditionally selected animals for breeding predominately on the basis of wool characteristics. Over recent decades, an increasing proportion of Merino breeders are interested in producing a ewe that can be used for prime-lamb production, but that also performs well for wool characteristics. Correlations between ultrasound carcass traits and other traits such as wool, internal parasite resistance and reproduction traits, are not very well known. The aims of this study were three-fold: (1) to estimate the genetic relationships between ultrasound carcass traits and wool, internal parasite resistance and reproduction traits, (2) to determine the value of recording ultrasound carcass traits in Merino breeding programs, and (3) to evaluate the impact of improving ewe genetic merit for fatness on their reproduction performance. Ultrasound fat and eye muscle depth had small to moderate genetic correlations with most traits, with positive correlations observed for bodyweight, fibre diameter, fibre curvature and reproduction, and negative correlations observed for fleece weight, fibre diameter coefficient of variation, worm egg count and breech wrinkle. As expected on the basis of these genetic correlations, estimated breeding values for fat depth of ewes had a positive association with their observed reproduction performance, but the effect explained only minimal variation in reproductive performance, and was extremely variable among flocks and years. A range of measurement scenarios was investigated for three standard MERINOSELECT indexes. Measuring fat and eye muscle depth resulted in 3%, 4% and 21% additional economic index gain for the fine, medium and dual purpose indexes, respectively, whereas measuring reproduction traits directly resulted in 17%, 27% and 45% additional gain in the economic index. Dual purpose index gains benefited more from measuring ultrasound carcass traits as it is the only index with a direct economic value placed on carcass traits. Measuring fat and eye muscle depth also resulted in a greater reduction in worm egg count. The results indicated that desirable genetic progress can be made in wool, ultrasound carcass, internal parasite resistance and number of lambs born and weaned simultaneously using multiple trait selection to account for the mix of favourable and unfavourable correlations between these traits. These results also demonstrated that the best method to maximise economic gain is to measure as many traits (or closely correlated traits) in the breeding objective as possible.

Quantitative study of genetic gain for growth, carcass, and morphological traits of Nelore cattle

2019 ◽  
Vol 99 (2) ◽  
pp. 296-306
Author(s):  
Daniel Duarte da Silveira ◽  
Lucas De Vargas ◽  
Rodrigo Junqueira Pereira ◽  
Gabriel Soares Campos ◽  
Ricardo Zambarda Vaz ◽  
...  
Keyword(s):  
Genetic Variability ◽  
Carcass Traits ◽  
Genetic Correlations ◽  
Correlated Response ◽  
Genetic Associations ◽  
Muscle Area ◽  
Genetic Gains ◽  
Fat Thickness ◽  
Nelore Cattle ◽  
Genetic Trends

The aim of this study was to evaluate the genetic variability, genetic and phenotypic associations, and genetic gains of birth (BW), weaning (WW), and yearling (YW) weights, loin muscle area (LMA), backfat thickness (BF), rump fat thickness (RF), scores of body structure (BS), finishing precocity (FS), and muscling (MS) in Nelore cattle. Genetic parameters were obtained through Bayesian inference using BLUPF90 programs. All studied traits showed genetic variability, with heritability ranging from 0.29 to 0.47. In all studied ages, weights presented positive genetic correlations with LMA (ranging from 0.13 to 0.53), being generally stronger in comparison with the other carcass traits analyzed (BF and RF). Similarly, weights were higher genetic associated with BS (0.47–0.92) than with FS (0.18–0.62) and MS (0.22–0.65), respectively. The BF and RF showed positive and moderate genetic associations with FS and MS (0.31–0.36). Genetic trends were significant (P < 0.05) and favorable for WW, YW, and visual scores. Selection for increasing BW, WW, YW, and LMA will result in modest or no change in BF and RF (correlated response ranging from −0.04 to 0.07 mm per generation). In this population, carcass traits must be included in the selection indexes to obtain genetic gains in carcass quality, if desired.

HERITABILITIES AND GENETIC CORRELATIONS FOR ULTRASONIC BACKFAT MEASUREMENTS, GROWTH AND CARCASS TRAITS IN SWINE

1982 ◽  
Vol 62 (3) ◽  
pp. 665-670 ◽  
Author(s):  
D. C. JEFFRIES ◽  
R. G. PETERSON
Keyword(s):  
Key Words ◽  
Genetic Correlation ◽  
Genetic Parameters ◽  
Average Daily Gain ◽  
Genetic Correlations ◽  
Phenotypic Correlation ◽  
Ultrasonic Measurements ◽  
Yorkshire Pigs ◽  
Daily Gain ◽  
Season Interaction

Genetic parameters were estimated for 2403 purebred Yorkshire pigs over a 2-yr period, representing 21 sires. The traits studied included average daily gain, age adjusted to 90 kg, ultrasonic measurements of backfat at the mid-back and loin positions, total and adjusted total ultrasonic backfat and corresponding carcass backfat measurements. Least squares analyses were used to estimate and adjust for the effects of sex, year-season and sex by year-season interaction. Heritabilities and genetic correlations were calculated for all traits using both half- and full-sib estimates. Adjusted age and adjusted total ultrasonic backfat measurements were found to have the highest heritabilities of the live traits in this study. Estimates of heritability for adjusted age and adjusted total ultrasonic backfat were 0.24 ± 0.10 and 0.26 ± 0.10 based on half-sib and 0.56 ± 0.07 and 0.41 ± 0.06 from full-sib analyses. The genetic correlation between these two traits was −0.07 ± 0.28 based on the half-sib method. The total phenotypic correlation was −0.01 ± 0.02. Key words: Swine, ultrasonic backfat, heritabilities, genetic correlations

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