scholarly journals Environmental DNA concentrations are correlated with regional biomass of Atlantic cod in oceanic waters

2019 ◽  
Vol 2 (1) ◽  
Author(s):  
Ian Salter ◽  
Mourits Joensen ◽  
Regin Kristiansen ◽  
Petur Steingrund ◽  
Poul Vestergaard
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Environmental Dna ◽  
Sampling Effort ◽  
Trawl Survey ◽  
Catch Per Unit Effort ◽  
Fish Stocks ◽  
Powerful Approach ◽  
Commercially Important ◽  
Positive Correlations

AbstractEnvironmental DNA (eDNA) has emerged as a powerful approach for studying marine fisheries and has the potential to negate some of the drawbacks of trawl surveys. However, successful applications in oceanic waters have to date been largely focused on qualitative descriptions of species inventories. Here we conducted a quantitative eDNA survey of Atlantic cod (Gadus morhua) in oceanic waters and compared it with results obtained from a standardized demersal trawl survey. Detection of eDNA originating from Atlantic cod was highly concordant (80%) with trawl catches. We observed significantly positive correlations between the regional integrals of Atlantic cod biomass (kg) and eDNA quantities (copies) (R2 = 0.79, P = 0.003) and between sampling effort-normalised Catch Per Unit Effort (kg hr−1) and eDNA concentrations (copies L−1) (R2 = 0.71, P = 0.008). These findings extend the potential application of environmental DNA to regional biomass assessments of commercially important fish stocks in the ocean.

Estimating and testing non-additivity in fishing mortality: implications for detecting a fisheries collapse

2002 ◽  
Vol 59 (4) ◽  
pp. 597-601 ◽  
Author(s):  
Ransom A Myers ◽  
Terrance J Quinn II
Keyword(s):  
Population Model ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Fishing Mortality ◽  
Catch Per Unit Effort ◽  
Structured Population Model ◽  
Structured Population ◽  
Powerful Approach ◽  
Age Structured ◽  
Age Structured Model

Common in many fisheries collapses is a disproportionate increase in fishing mortality at younger ages. One mechanism by which this increase could occur is sufficient depletion of the population at older ages due to strong overfishing, which leads to targeting of younger fish. Thus, it is essential for assessments to estimate and test for a change in selectivity in the fishery. We introduce a simple and powerful approach based upon Tukey's one degree of freedom test for non-additivity. This approach can be applied within any statistical age-structured population model that estimates selectivity. We illustrate the approach with data from Atlantic cod (Gadus morhua) from St. Pierre Bank, Canada. The results show significant non-additivity in fishing mortality that translates into an increase in selectivity on younger ages when fishing mortality is high. This approach also can be applied to the output of an age-structured model that assumes catch-at-age is known without error or to any survey or catch-per-unit-effort data for which estimates of abundance are made by year and age. We believe that this approach should be routinely applied in assessments, particularly when overfishing has led to depletion of the overall population or to truncation of the age structure.

scholarly journals Temporal trends in probabilistic maturation reaction norms and growth of Atlantic cod (Gadus morhua) on the Icelandic shelf

2009 ◽  
Vol 66 (10) ◽  
pp. 1719-1733 ◽  
Author(s):  
Heidi Pardoe ◽  
Anssi Vainikka ◽  
Gudmundur Thórdarson ◽  
Gudrun Marteinsdóttir ◽  
Mikko Heino
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Temporal Trends ◽  
Age Groups ◽  
Reaction Norm ◽  
Genetic Change ◽  
Regional Survey ◽  
Fish Stocks ◽  
Abundance Estimates ◽  
Intensive Fishing

Decreasing temporal trends in probabilistic maturation reaction norm (PMRN) midpoints, symptomatic of earlier maturation despite environmentally induced variation in growth, have been observed in many exploited fish stocks. Here, we studied the growth and maturation trends of female and male Icelandic cod ( Gadus morhua ) by estimating PMRN midpoints for cohorts 1964–1999 and found evidence that a shift towards maturation at smaller sizes and younger ages has occurred independently of changes in growth, condition, and temperature. Weighting the data with regional survey abundance estimates to account for spatial heterogeneity in maturity status and sampling intensity did not qualitatively affect the temporal trends. Length-at-age also decreased through the study period, which, through simulations, could be attributed to the energetic costs of earlier maturity at maturing age groups but not at younger ages. These findings support the hypothesis that such changes in maturation schedules are not caused by environmental factors alone but could also reflect a genetic change, potentially in response to intensive fishing.

Benthic Habitats and the Effects of Fishing

2005 ◽  
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Fish Habitat ◽  
Weather Conditions ◽  
Data Sets ◽  
Fish Stocks ◽  
Habitat Features ◽  
The Irish Sea ◽  
Belfast Lough ◽  
Existing Data

<strong><em>Abstract. </em><strong>Fishers have often complained that standard United Kingdom groundfish survey data do not adequately reflect the grounds targeted by commercial fishers, and hence, scientists tend to make overcautious estimates of fish abundance. Such criticisms are of particular importance if we are to make a creditable attempt to classify potential essential fish habitat (EFH) using existing data from groundfish surveys. Nevertheless, these data sets provide a powerful tool to examine temporal abundance of fish on a large spatial scale. Here, we report a questionnaire-type survey of fishers (2001–2002) that invited them to plot the location of grounds of key importance in the Irish Sea and to comment on key habitat features that might constitute EFH for Atlantic cod <em>Gadus morhua</em>, haddock <em>Melanogrammus aeglefinus</em>, and European whiting <em>Merlangius merlangus</em>. Plotted grounds were cross-checked using records of vessel sightings by fishery protection aircraft (1985–1999). A comparison of the areas of seabed highlighted by fishers and the observations made on groundfish surveys were broadly compatible for all three species of gadoids examined. Both methods indicated important grounds for cod and European whiting off northern Wales, the Ribble estuary, Solway Firth, north of Dublin, and Belfast Lough. The majority of vessel sightings by aircraft did not match the areas plotted by fishers. However, fishing restrictions, adverse weather conditions, and seasonal variation of fish stocks may have forced fishers to operate outside their favored areas on the (few) occasions that they had been recorded by aircraft. Fishers provided biological observations that were consistent among several independent sources (e.g., the occurrence of haddock over brittle star [ophiuroid] beds). We conclude that fishers’ knowledge is a useful supplement to existing data sets that can better focus more detailed EFH studies.

The influence of forage fish abundance on the aggregation of Gulf of Maine Atlantic cod (Gadus morhua) and their catchability in the fishery

2014 ◽  
Vol 71 (9) ◽  
pp. 1349-1362 ◽  
Author(s):  
David E. Richardson ◽  
Michael C. Palmer ◽  
Brian E. Smith
Keyword(s):  
Gadus Morhua ◽  
Gulf Of Maine ◽  
Atlantic Cod ◽  
Distribution Patterns ◽  
Fish Populations ◽  
Dependent Data ◽  
Forage Fish ◽  
Catch Per Unit Effort ◽  
Sand Lance ◽  
Unit Effort

Shifts in the distribution and aggregation patterns of exploited fish populations can affect the behavior and success of fishermen and can complicate the interpretation of fisheries-dependent data. Starting in 2006, coinciding with an increase in sand lance (Ammodytes spp.) abundance, Gulf of Maine Atlantic cod (Gadus morhua) concentrated on Stellwagen Bank, a small (405 km2) underwater plateau located in the southwestern portion of the larger (52 461 km2) stock area. The cod fishery in turn concentrated on Stellwagen Bank. Specifically, the proportion of Gulf of Maine cod landings caught in a single 10-minute square area (260 km2) encompassing the tip of Stellwagen Bank increased from 12% in 2005 to 45% in 2010. An increase in landings per unit effort in the fishery coincided with the concentration of the fleet on Stellwagen Bank. Overall, both fisheries-independent and fisheries-dependent data indicate that an increase in sand lance abundance resulted in cod aggregating in a small and predictable area where they were easily caught by the fishery. More broadly, this work illustrates how changes in the distribution patterns of fish and fisherman can decouple trends in abundance and fisheries catch per unit effort.

scholarly journals Detecting regime shifts in fish stock dynamics

2015 ◽  
Vol 72 (11) ◽  
pp. 1619-1628 ◽  
Author(s):  
Tommi Perälä ◽  
Anna Kuparinen
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Stock Assessment ◽  
Detection Algorithm ◽  
Regime Shifts ◽  
Change Point Detection ◽  
Fish Stock ◽  
Fish Stocks ◽  
Data Generating Process ◽  
Change In Mean

Environmental factors such as water temperature, salinity, and the abundance of zooplankton can have major effects on certain fish stocks’ ability to produce juveniles and, thus, stock renewal ability. This variability in stock productivity manifests itself as different productivity regimes. Here, we detect productivity regime shifts by analyzing recruit-per-spawner time series with Bayesian online change point detection algorithm. The algorithm infers the time since the last regime shift (change in mean or variance or both) as well as the parameters of the data-generating process for the current regime sequentially. We demonstrate the algorithm’s performance using simulated recruitment data from an individual-based model and further apply the algorithm to stock assessment estimates for four Atlantic cod (Gadus morhua) stocks obtained from RAM legacy database. Our analysis shows that the algorithm performs well when the variability between the regimes is high enough compared with the variability within the regimes. The algorithm found several productivity regimes for all four cod stocks, and the findings suggest that the stocks are currently in low productivity regimes, which have started during the 1990s and 2000s.

scholarly journals Thermal biology and swimming performance of Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus)

PeerJ ◽  
2019 ◽  
Vol 7 ◽  
pp. e7784 ◽  
Author(s):  
Tommy Norin ◽  
Paula Canada ◽  
Jason A. Bailey ◽  
A. Kurt Gamperl
Keyword(s):  
Gadus Morhua ◽  
Metabolic Response ◽  
Atlantic Cod ◽  
Swimming Performance ◽  
Melanogrammus Aeglefinus ◽  
Thermal Biology ◽  
Oxygen Transport Capacity ◽  
Thermal Maximum ◽  
Commercially Important ◽  
Better Than

Atlantic cod (Gadus morhua) and haddock (Melanogrammus aeglefinus) are two commercially important marine fishes impacted by both overfishing and climate change. Increasing ocean temperatures are affecting the physiology of these species and causing changes in distribution, growth, and maturity. While the physiology of cod has been well investigated, that of haddock has received very little attention. Here, we measured the metabolic response to increasing temperatures, as well as the critical thermal maximum (CTmax), of cod acclimated to 8 and 12 °C and haddock acclimated to 12 °C. We also compared the swimming performance (critical swimming speed, Ucrit) of cod and haddock at 12 °C, as well as the Ucrit of 12 °C-acclimated cod acutely exposed to a higher-than-optimal temperature (16 °C). The CTmax for cod was 21.4 and 23.0 °C for 8- and 12 °C-acclimated fish, respectively, whereas that for the 12 °C-acclimated haddock was 23.9 °C. These values were all significantly different and show that haddock are more tolerant of high temperatures. The aerobic maximum metabolic rate (MMR) of swimming cod remained high at 16 °C, suggesting that maximum oxygen transport capacity was not limited at a temperature above optimal in this species. However, signs of impaired swimming (struggling) were becoming evident at 16 °C. Haddock were found to reach a higher Ucrit than cod at 12 °C (3.02 vs. 2.62 body lengths s−1, respectively), and at a lower MMR. Taken together, these results suggest that haddock perform better than cod in warmer conditions, and that haddock are the superior swimmer amongst the two species.

scholarly journals Cod catches taken by the German recreational fishery in the western Baltic Sea, 2005–2010: implications for stock assessment and management

2012 ◽  
Vol 69 (10) ◽  
pp. 1769-1780 ◽  
Author(s):  
Harry V. Strehlow ◽  
Norbert Schultz ◽  
Christopher Zimmermann ◽  
Cornelius Hammer
Keyword(s):  
Baltic Sea ◽  
Gadus Morhua ◽  
Stock Assessment ◽  
Mail Survey ◽  
Fishing Effort ◽  
Commercial Fishery ◽  
Catch Per Unit Effort ◽  
Yearly Variation ◽  
Fish Stocks ◽  
Recreational Fishery

Abstract Strehlow, H. V., Schultz, N., Zimmermann, C., and Hammer, C. 2012. Cod catches taken by the German recreational fishery in the western Baltic Sea, 2005–2010: implications for stock assessment and management. – ICES Journal of Marine Science, 69: 1769–1780. Next to the commercial fishery, the recreational fishery plays an important role in the removal of biomass from fish stocks. In this study, we present estimates of German recreational cod (Gadus morhua) catches in the western Baltic Sea between 2005 and 2010. Fishing effort was estimated using a stratified mail survey and annual sales of fishing licences. Catch per unit effort was estimated by stratified random sampling of access points and interviews about completed trips. Length distributions of cod catches were acquired by sampling recreational cod catches from charter boats and data from community fishing events. Estimates of the total cod biomass removed by the recreational fishery fluctuated between 2159 t in 2009 and 4127 t in 2005. Annual recreational fishery cod harvests accounted for a significant share of the total landings, with a yearly variation from 34 to 70% of the German commercial cod landings from the western Baltic Sea. The majority of recreational fishery cod catches were taken from private boats and charter vessels. Because of the amount and specifically the variability of the recreational catches, they are important for the assessment and management of the resource and, therefore, need to be surveyed annually.

The role of seasonally altering photoperiod in regulating physiology in Atlantic cod (Gadus morhua). Part I. Sexual maturation

2007 ◽  
Vol 64 (1) ◽  
pp. 84-97 ◽  
Author(s):  
Andrew Davie ◽  
Mark JR Porter ◽  
Niall R Bromage ◽  
Herve Migaud
Keyword(s):  
Sexual Maturation ◽  
Gadus Morhua ◽  
Atlantic Cod ◽  
Reproductive Activity ◽  
Continuous Illumination ◽  
Natural Photoperiod ◽  
Artificial Photoperiod ◽  
Commercially Important ◽  
Photoperiod Manipulation

While the Atlantic cod (Gadus morhua) displays clear seasonality in its reproductive cycle, the exact photic signal that entrains this rhythm is yet undefined. This present work developed a model to describe the photic regulation of reproduction in the species in comparison with other commercially important temperate teleosts. This was achieved through the strategic masking of the natural photoperiod cycle during the first 2 years of life with the application of continuous illumination. The results demonstrated that it is the falling autumnal photoperiod signal after the summer solstice, more specifically after October, that is responsible for recruiting individuals to enter the sexual maturation cycle. Furthermore, in all treatments where this signal was masked through the application of continuous illumination, there was no significant reproductive activity and growth was improved by up to 60% at 27 months posthatch. This information is of particular value to the developing cod aquaculture industry in which the management of reproduction using artificial photoperiod manipulation will be of vital economic importance.

Causes of mortality in depleted populations of Atlantic cod estimated from multi-event modelling of mark–recapture and recovery data

2017 ◽  
Vol 74 (1) ◽  
pp. 116-126 ◽  
Author(s):  
Albert Fernández-Chacón ◽  
Even Moland ◽  
Sigurd Heiberg Espeland ◽  
Alf Ring Kleiven ◽  
Esben Moland Olsen
Keyword(s):  
Gadus Morhua ◽  
Atlantic Cod ◽  
Local Population ◽  
Mark Recapture ◽  
Fish Stocks ◽  
Annual Survival ◽  
Animal Populations ◽  
Causes Of Mortality ◽  
Mortality Causes ◽  
Southern Norway

Knowledge on mortality causes is key for an effective management of animal populations and can help to restore depleted fish stocks. Here we investigated the mortality dynamics of coastal Atlantic cod (Gadus morhua) in Skagerrak, southern Norway, by analyzing local mark–recapture and recovery data collected from 2005 to 2013 (N = 9360 fish, mean length = 41 cm, range = 16–93 cm). By applying multi-event models to the data, we could link field observations to multiple “dead states” and estimate the proportion of deaths associated with different fishing gears while controlling for unobserved mortality and detection errors. Deaths due to hand lines and fixed gear types were dominant compared with other causes, especially in legal-sized cod (≥40 cm). Gear-specific mortality changed over time and between size classes, but annual survival remained low and stable (∼0.3). Assuming fully additive mortality, we predicted annual survival of cod to be above 0.5 if only one or both of the dominant gear types were removed, providing insights on the relative impact of diverse harvesting practices on local population dynamics.

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