scholarly journals Active matter invasion

Soft Matter ◽  
2019 ◽  
Vol 15 (38) ◽  
pp. 7538-7546 ◽  
Author(s):  
Felix Kempf ◽  
Romain Mueller ◽  
Erwin Frey ◽  
Julia M. Yeomans ◽  
Amin Doostmohammadi

Biological materials such as bacterial biofilms and eukaryotic cells combine their intrinsic activity with growth dynamics to create distinct patterns of motion for invading confined spaces.

2021 ◽  
Vol 8 (19) ◽  
pp. 2170129
Author(s):  
Carmen C. Mayorga‐Martinez ◽  
Jaroslav Zelenka ◽  
Jan Grmela ◽  
Hana Michalkova ◽  
Tomáš Ruml ◽  
...  

Author(s):  
Agnese Callegari ◽  
Tugba Andac ◽  
Pascal Weigmann ◽  
Sabareesh K. P. Velu ◽  
Ercag Pince ◽  
...  

2020 ◽  
Vol 15 (12) ◽  
pp. 1109-1121
Author(s):  
José JC Sidrim ◽  
Crister J Ocadaque ◽  
Bruno R Amando ◽  
Glaucia M de M Guedes ◽  
Cecília L Costa ◽  
...  

Aim: This study evaluated the effect of the biosurfactant rhamnolipid on the antimicrobial susceptibility, biofilm growth dynamics and production of virulence factors by Burkholderia pseudomallei. Materials & methods: The effects of rhamnolipid on planktonic and biofilm growth and its interaction with antibacterial drugs were evaluated. Then, its effects on growing and mature biofilms and on protease and siderophore production were assessed. Results: Rhamnolipid did not inhibit B. pseudomallei growth, but significantly enhanced the activity of meropenem and amoxicillin-clavulanate against mature biofilms. Rhamnolipid significantly reduced the biomass of mature biofilms, significantly increased protease production by growing and mature biofilms and siderophore release by growing biofilms. Conclusion: Rhamnolipid enhances the antimicrobial activity against B. pseudomallei, assists biofilm disassembly and alters protease and siderophore production by bacterial biofilms.


Soft Matter ◽  
2019 ◽  
Vol 15 (7) ◽  
pp. 1488-1496 ◽  
Author(s):  
Tugba Andac ◽  
Pascal Weigmann ◽  
Sabareesh K. P. Velu ◽  
Erçağ Pinçe ◽  
Giorgio Volpe ◽  
...  

Active matter in a drying droplet alters the growth dynamics of coffee rings and leads to a more uniform distribution.


2021 ◽  
pp. 2101301
Author(s):  
Carmen C. Mayorga‐Martinez ◽  
Jaroslav Zelenka ◽  
Jan Grmela ◽  
Hana Michalkova ◽  
Tomáš Ruml ◽  
...  

ACS Omega ◽  
2019 ◽  
Vol 4 (15) ◽  
pp. 16667-16673 ◽  
Author(s):  
Xinglu Jiang ◽  
Chenggui Zhao ◽  
Xiaobo Fan ◽  
Guoqiu Wu

2018 ◽  
Vol 29 (4) ◽  
pp. 510-522 ◽  
Author(s):  
Eigo Takeda ◽  
Natsuko Jin ◽  
Eisuke Itakura ◽  
Shintaro Kira ◽  
Yoshiaki Kamada ◽  
...  

Target of rapamycin complex 1 (TORC1) is a central cellular signaling coordinator that allows eukaryotic cells to adapt to the environment. In the budding yeast, Saccharomyces cerevisiae, TORC1 senses nitrogen and various stressors and modulates proteosynthesis, nitrogen uptake and metabolism, stress responses, and autophagy. There is some indication that TORC1 may regulate these downstream pathways individually. However, the potential mechanisms for such differential regulation are unknown. Here we show that the serine/threonine protein kinase Sch9 branch of TORC1 signaling depends specifically on the integrity of the vacuolar membrane, and this dependency originates in changes in Sch9 localization reflected by phosphatidylinositol 3,5-bisphosphate. Moreover, oxidative stress induces the delocalization of Sch9 from vacuoles, contributing to the persistent inhibition of the Sch9 branch after stress. Thus, our results establish that regulation of the vacuolar localization of Sch9 serves as a selective switch for the Sch9 branch in divergent TORC1 signaling. We propose that the Sch9 branch integrates the intrinsic activity of TORC1 kinase and vacuolar status, which is monitored by the phospholipids of the vacuolar membrane, into the regulation of macromolecular synthesis.


Author(s):  
R. C. Moretz ◽  
G. G. Hausner ◽  
D. F. Parsons

Electron microscopy and diffraction of biological materials in the hydrated state requires the construction of a chamber in which the water vapor pressure can be maintained at saturation for a given specimen temperature, while minimally affecting the normal vacuum of the remainder of the microscope column. Initial studies with chambers closed by thin membrane windows showed that at the film thicknesses required for electron diffraction at 100 KV the window failure rate was too high to give a reliable system. A single stage, differentially pumped specimen hydration chamber was constructed, consisting of two apertures (70-100μ), which eliminated the necessity of thin membrane windows. This system was used to obtain electron diffraction and electron microscopy of water droplets and thin water films. However, a period of dehydration occurred during initial pumping of the microscope column. Although rehydration occurred within five minutes, biological materials were irreversibly damaged. Another limitation of this system was that the specimen grid was clamped between the apertures, thus limiting the yield of view to the aperture opening.


Author(s):  
T. Gulik-Krzywicki ◽  
M.J. Costello

Freeze-etching electron microscopy is currently one of the best methods for studying molecular organization of biological materials. Its application, however, is still limited by our imprecise knowledge about the perturbations of the original organization which may occur during quenching and fracturing of the samples and during the replication of fractured surfaces. Although it is well known that the preservation of the molecular organization of biological materials is critically dependent on the rate of freezing of the samples, little information is presently available concerning the nature and the extent of freezing-rate dependent perturbations of the original organizations. In order to obtain this information, we have developed a method based on the comparison of x-ray diffraction patterns of samples before and after freezing, prior to fracturing and replication.Our experimental set-up is shown in Fig. 1. The sample to be quenched is placed on its holder which is then mounted on a small metal holder (O) fixed on a glass capillary (p), whose position is controlled by a micromanipulator.


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