scholarly journals Kinetics of the reaction of thrombin and α2-macroglobulin

1985 ◽  
Vol 231 (2) ◽  
pp. 417-423 ◽  
Author(s):  
R D Feinman ◽  
A I Yuan ◽  
S R Windwer ◽  
D Wang

The kinetics of the reaction of alpha 2-macroglobulin (alpha 2M) with human thrombin were studied by recording the appearance of thiol groups spectrophotometrically and by measuring the distribution of protein species by denaturing non-reducing gel electrophoresis. The goals were to study the relation between the formation of various covalent enzyme-inhibitor complex species and the appearance of free thiol, and from the kinetic analysis, to try to characterize the chemical nature of the protein complexes. The kinetics of thiol-group release were observed to be biphasic, the early phase showing second-order behaviour, results consistent with previous reports in the literature. The observed second-order rate constant for thiol-group release was found to be faster than the second-order rate constant for the disappearance of the band corresponding to native alpha 2M on gel electrophoresis. This may be a reflection of the multiple products formed from the thioester. Alternatively, it is possible that covalent-bond formation is slower than some enzyme-induced change in the thioester centre, and this may be suggestive evidence for a reactive alpha 2M centre that does not contain an intact thioester. The kinetics of covalent-bond formation were found to be consistent with the internal cross-link of several alpha 2M chains by the bound proteinase, providing further evidence that the very-high-Mr species seen on gels may arise from dimers of the alpha 2M molecule held together by covalent bonds to the enzyme.

1973 ◽  
Vol 51 (4) ◽  
pp. 582-587 ◽  
Author(s):  
M. L. Cotton ◽  
H. B. Dunford

In order to investigate the nature of compounds I and II of horseradish peroxidase, the kinetics were studied of ferrocyanide oxidation catalyzed by these compounds which were prepared from three different oxidizing agents. The pH dependence of the apparent second-order rate constant for ferrocyanide oxidation by compound I, prepared from ethyl hydroperoxide and m-chloroperbenzoic acid, was interpreted in terms of an ionization on the enzyme with a pKa = 5.3, identical to that reported previously for hydrogen peroxide. The second-order rate constant for the compound II-ferrocyanide reaction also showed the same pH dependence for the three oxidizing substrates. However, with more accurate results, the compound II-ferrocyanide reaction was reinterpreted in terms of a single ionization with pKa = 8.5. The same dependence of ferrocyanide oxidation on pH suggests structurally identical active sites for compounds I and II prepared from the three different oxidizing substrates.


1964 ◽  
Vol 42 (4) ◽  
pp. 934-940 ◽  
Author(s):  
P. F. Barrett ◽  
W. MacF. Smith

The kinetics of the formation of the bidentate monocomplex of 1,10-phenanthroline and nickel (II) have been examined spectrophotometrically at ionic strength 0.5 over the range of temperatures 8 to 37 °C and over the range of hydrogen ion concentrations 0.01 to 0.30 molar. The kinetic behavior over the range of conditions is consistent with that found at 25 °C by Margerum, Bystroff, and Banks. The limiting values for the second-order rate constant for the reaction at high acidities have been assessed and imply associated values of ΔH≠and ΔS≠ of 9.5 kcal mol−1 and −5.3 e.u. respectively.


1996 ◽  
Vol 76 (04) ◽  
pp. 556-560 ◽  
Author(s):  
Raimondo De Cristofaro

SummaryA viscosity perturbation method allowed to compute the second order rate constant, k±15 for the formation of thrombin-Protein C complex, both in the absence and presence of thrombomodulin (TM) at pH 8.00 and 37° C. In the absence of TM the second order rate constant was found equal to 7.9 ± 0.6 × 103 M-1 sec-1, whereas it was enhanced to 9.9 ± 0.4 × 104 M-1 s-1 by a saturating (100 nM) TM concentration. Addition of 5 mM Ca++ to solution containing 100 nM TM induced a further increase of k+1 value up to 7.3 ± 0.5 × 105 M-1 s-1. Moreover, it was demonstrated that the thrombin-PC complex undergoes the acy-lation reaction more rapidly than it dissociates to form free thrombin and substrate (stickiness ratio = 2.4 ± 0.9). This tendency is even favored when thrombin is bound to TM both in the absence and presence of Ca++ (stickiness ratio = 9 ± 6 in the absence of Ca++ and 16 ± 10 in the presence of Ca++). Altogether these results demonstrate that TM is able to positively affect both the molecular encounter and the kinetics of the early catalytic events of the thrombin-Protein C interaction.


1991 ◽  
Vol 275 (2) ◽  
pp. 335-339 ◽  
Author(s):  
H C Hawkins ◽  
R B Freedman

1. The number of reactive thiol groups in mammalian liver protein disulphide-isomerase (PDI) in various conditions was investigated by alkylation with iodo[14C]acetate. 2. Both the native enzyme, as isolated, and the urea-denatured enzyme contained negligible reactive thiol groups; the enzyme reduced with dithiothreitol contained two groups reactive towards iodoacetic acid at pH 7.5, and up to five reactive groups were detectable in the reduced denatured enzyme. 3. Modification of the two reactive groups in the reduced native enzyme led to complete inactivation, and the relationship between the loss of activity and the extent of modification was approximately linear. 4. Inactivation of PDI by alkylation of the reduced enzyme followed pseudo-first-order kinetics; a plot of the pH-dependence of the second-order rate constant for inactivation indicated that the essential reactive groups had a pK of 6.7 and a limiting second-order rate constant at high pH of 11 M-1.s-1. 5. Since sequence data on PDI show the presence within the polypeptide of two regions closely similar to thioredoxin, the data strongly indicate that these regions are chemically and functionally equivalent to thioredoxin. 6. The activity of PDI in thiol/disulphide interchange derives from the presence of vicinal dithiol groups in which one thiol group of each pair has an unusually low pK and high nucleophilic reactivity at physiological pH.


1990 ◽  
Vol 68 (2) ◽  
pp. 476-479
Author(s):  
Donald C. Wigfield ◽  
Douglas M. Goltz

The kinetics of the reconstitution reaction of apotyrosinase with copper (II) ions are reported. The reaction is pseudo first order with respect to apoenzyme and the values of these pseudo first order rate constants are reported as a function of copper (II) concentration. Two copper ions bind to apoenzyme, and if the second one is rate limiting, the kinetically relevant copper concentration is the copper originally added minus the amount used in binding the first copper ion to enzyme. This modified copper concentration is linearly related to the magnitude of the pseudo first order rate constant, up to a copper concentration of 1.25 × 10−4 M (10-fold excess), giving a second order rate constant of 7.67 × 102 ± 0.93 × 102 M−1∙s−1.Key words: apotyrosinase, copper, tyrosinase.


Blood ◽  
2012 ◽  
Vol 120 (21) ◽  
pp. 2211-2211
Author(s):  
Ankush Chander ◽  
Helen M Atkinson ◽  
Leslie R. Berry ◽  
Anthony K.C. Chan

Abstract Abstract 2211 Introduction: Unfractionated heparin (UFH) is used for the prophylaxis and treatment of thromboembolic diseases. UFH catalyzes inhibition by antithrombin (AT) of the serine proteases in the coagulation cascade. Additionally, UFH has been shown to interact with components of the fibrinolytic pathway in vitro. However UFH has several limitations which impact its utility as a therapeutic agent. Our lab has developed a novel covalent antithrombin-heparin complex (ATH) which inhibits most serine proteases of the coagulation pathway significantly faster when compared to non covalent mixtures of AT and UFH. However, the interactions of ATH with the components of the fibrinolytic pathway have not been studied before. Thus, the present study investigates possible serpin-heparin interactions of AT + UFH vs ATH within the fibrinolytic pathway. Methods: Discontinuous second order rate constant assays under pseudo-first order conditions were carried out to obtain second order rate constant (k2) values for the inhibition of plasmin by AT+UFH versus ATH. Briefly, at specific time intervals 20 nM plasmin was inhibited by 200 nM AT + 0–5000 nM UFH or by 200 nM ATH in the presence of 2.5 mM Ca2+. Reactions were neutralized by the simultaneous addition of a solution containing polybrene and plasmin substrate S-2366™ in buffer. Residual plasmin activity was measured and the final k2 values calculated. For experiments involving tPA, wells containing 40nM tPA and increasing concentrations of AT, UFH or ATH, at mole ratios ranging from 0 to 20:1, were incubated for 15 min. Reactions with tPA were neutralized by simultaneous addition of a solution containing either polybrene and tPA substrate, S-2288™ in buffer, (ATH and UFH) or only the substrate S-2288™ in buffer (AT). Enzyme activity was then determined by measuring rate of substrate cleavage (Vmax). Results: When plasmin was inhibited by AT in the absence of UFH, k2 values of 2.82×105 +/− 4.46×104 M−1 min−1 were observed. The k2 values increased with addition of successively higher concentrations of UFH up to a plateau with maximal k2 of 5.74×106 +/− 2.78×105 M−1 min−1 at a UFH concentration of 3000nM. For inhibition of plasmin by ATH, k2 values of 6.39 × 106 +/− 5.88 × 105 M−1 min−1 were observed. Inhibition of plasmin by ATH was not significantly different when compared to the highest k2 values obtained with UFH. (p=0.36) No statistically significant difference in tPA enzyme activity was observed when Vmax values for tPA alone were compared with those in the presence of AT, UFH or ATH. (p=0.932, p=0.085, p=0.31 respectively) Significance: The characteristic shape of the curve obtained from the k2vs. UFH plot suggests that the mechanism responsible for inhibition of plasmin by AT+UFH involves conformational activation of the serpin. The k2 values in this study for inhibition of plasmin by both AT+UFH and ATH were three orders of magnitude lower than k2 values for inhibition of thrombin or factor Xa. Furthermore these results suggest that tPA is not inhibited by AT + UFH or ATH, and is not influenced by the presence of UFH alone. Cumulatively, this indicates that the fibrinolytic pathway is minimally impacted by AT + UFH or ATH, allowing maximal antithrombotic potential to be achieved during anticoagulation. Overall, the favourable anticoagulant properties of ATH combined with the findings of this study strengthens the utility of the covalent conjugate over conventional UFH for the treatment of thromboembolic disorders. Disclosures: No relevant conflicts of interest to declare.


1982 ◽  
Vol 60 (15) ◽  
pp. 1988-1995 ◽  
Author(s):  
J. C. Halle ◽  
M. J. Pouet ◽  
M. P. Simonnin ◽  
F. Debleds ◽  
F. Terrier

Reaction of 1,3,5-trinitrobenzene (TNB) with pyrrole, 2,5-dimethyl pyrrole, and 2,4-dimethyl-3-ethyl pyrrole in the presence of a strong base (CH3O−) yields nitrogen- and/or carbon-bonded 1:1 σ-complexes in dimethylsulphoxide (DMSO). Depending on the stoichiometry of the reagents, 1:2 and 2:1 pyrrole–TNB diadducts are also formed. Identification of all complexes was effected by nmr. The reactive species are shown to be the pyrrolide ions and the results emphasize the ambident character of these anions towards an aromatic electrophile. Some of the complexes have been isolated as crystalline potassium salts when experiments are performed in acetonitrile. Among the isolable complexes, the kineticallybutnotthermodynamicallyfavored nitrogen adduct of pyrrole (5a) is remarkably unreactive. The second-order rate constant kH+ for is H+-catalyzed decomposition in aqueous solution is only 1 L mol−1 s−1 (t = 25 °C).


1986 ◽  
Vol 233 (2) ◽  
pp. 553-557 ◽  
Author(s):  
R Blackmore ◽  
T Brittain

The six haem groups of the nitrite reductase enzyme isolated from Wolinella succinogenes are rapidly reduced by the addition of dithionite (S2O4(2-)). The reduction, however, is not homogeneous. Two of the haem groups, namely those that show spectral characteristics typical of five-co-ordinated haem groups, are reduced in a dithionite-concentration-dependent fashion with a rate limit of 1.5 S-1. The other four haem groups, which show spectral characteristics very similar to those of normal six-co-ordinate c-haem groups, reduce in a linear dithionite-concentration-dependent manner with a second-order rate constant of 150 M-1/2 X S-1. The ratio of the amplitudes of the two reduction phases observed in stopped-flow studies is found to be dependent on the concentration of dithionite used. A model is proposed to account for these observations, and computer simulations show that the model represents a good fit to the experimental data. The two haem groups with five-co-ordinate spectral characteristics bind CO. Flash photolysis of the CO complex exhibits one major recombination process with a linear dependence in rate on CO concentration with a second-order rate constant of 2 × 106 M-1 × S-1. By contrast, stopped-flow mixing of the reduced protein with CO shows a very complex pattern of combination, with most of the observed absorbance change associated with a concentration-independent step. These findings are rationalized in terms of structural changes in the protein consequent to ligand binding.


1984 ◽  
Vol 62 (3) ◽  
pp. 580-585 ◽  
Author(s):  
Parminder S. Surdhar ◽  
Rizwan Ahmad ◽  
David A. Armstrong

Spectral changes and rates of reaction of flavins and several radical species have been investigated at pH 7, 9, and 10 in the presence and absence of β-mercaptoethanol. The radicals •CO2−, eaq−, and [Formula: see text] reacted with FAD at pH 10 to give a spectrum of FAD •Fl− with rate constants of 7 ± 1 × 108 and 4 ± 1 × 108 M−1 s−1 for •CO2− and [Formula: see text] respectively. At pH 7 only •FlH was observed and at pH 9 a mixture of •FIH and •Fl−.Interactions between flavin radicals and sulphydryl at 10−4 M concentration did not cause perturbations in the uv–visible spectra until either the radical and/or the sulphydryl were ionized. With FAD at pH 9 or 10 and LFl at pH 10 the 370 nm peak of •Fl− was enhanced by about 15% and a second larger growth occurred near 450 nm in the presence of 10−4 to 10−2 M sulphydryl. We attribute this to the formation of labile intermediate RSHFl•−, which must also be involved in the reduction of Fl by [Formula: see text] at pH 9 or 10.The second order rate constant k13 for reaction of [Formula: see text] with FAD at pH 9 and 10 was found to be 4.2 ± 0.5 × 108 M−1 s−1 and 2.0 ± 0.4 × 108 M−1 s−1 respectively. The rate constant for the reaction between [Formula: see text] and LFl at pH 10 was slightly faster, 7 ± 1 × 108 M−1 s−1, probably reflecting the fact that LFl lacks the bulky negatively charged adenine dinucleotide group of FAD.


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