SGS Database: use of relational databases to enhance data management for multi-site experiments

2003 ◽  
Vol 43 (8) ◽  
pp. 729 ◽  
Author(s):  
J. M. Scott ◽  
C. J. Lord
Keyword(s):  
Relational Databases ◽  
Data Handling ◽  
Desktop Application ◽  
Wide Range ◽  
Degree Of Satisfaction ◽  
Grazing Systems ◽  
Sustainable Grazing ◽  
The Many ◽  
High Degree ◽  
Over Time

Relational databases are increasingly used to manage large and complex experimental datasets. This technology was chosen to create a common database tool for a large multi-site experiment which measured aspects of the sustainability of various regionally focused grazing experiments, as part of the Sustainable Grazing Systems Program. Since the data needs of experiments expanded over time and the number of sites and subsites increased, it was necessary to adopt an evolutionary approach to creating the database. It was important that the database be customised to accommodate the wide range of experiments and the diverse needs of the many scientists involved and yet have complete conformity of structure to permit across-site queries. This paper describes the steps taken in this process and suggests how similar database projects could be implemented more efficiently in the future. As most of the scientists involved were initially new users of relational databases, there were some delays in achieving full adoption of a uniform approach to data handling. The software chosen was a commonly available desktop application which was modified using code developed to allow graphical queries, quality assurance of data, and interfacing with a purpose-built simulation model. A survey of users at the end of the project indicated that there was generally a high degree of satisfaction with the relational database developed, but it also identified areas requiring improvement. The need for developing mechanisms of sharing data and of protecting data for possible future use are briefly discussed.

Paper 9: A Rotating Cylinder Viscometer for Measurement at Elevated Temperature and Pressure

1965 ◽  
Vol 180 (10) ◽  
pp. 153-162
Author(s):  
J. Wonham
Keyword(s):  
High Pressures ◽  
Rotating Cylinder ◽  
Wide Range ◽  
New Instrument ◽  
Temperature And Pressure ◽  
Major Alteration ◽  
Set Up ◽  
The Many ◽  
High Degree ◽  
Cylinder Viscometer

This paper records some of the recent experimental methods used to determine the viscosity of water. In drawing attention to the many techniques used (most relying upon calibration of the instrument by a fluid of known viscosity), the conclusion may be drawn that an absolute instrument is required which will produce results over a wide range of temperature and pressure. It has long been known that the rotating cylinder viscometer is capable of a high degree of accuracy, but technical considerations have, in the past, restrained most workers from pursuing this method at high pressures. Progress in the development of the rotating cylinder instrument for these conditions is described and specific problems encountered with this method are discussed. This work is a continuation of the design studies of Kjelland-Fosterud (1)† and Whitelaw (2) who both gave considerable thought to the problems associated with this type of instrument. The first instrument to be tested by the author was based on Whitelaw's design but it was found that certain aspects of this instrument required major alteration. A new instrument was set up and has been found suitable for accurate viscosity determination.

Dissecting and Reconstructing Time and Space for Replicable Biological Research

2017 ◽  
Author(s):  
Barbara Helm ◽  
Ayelet Shavit
Keyword(s):  
Careful Consideration ◽  
Biological Research ◽  
Time And Space ◽  
Wide Range ◽  
The Many ◽  
Over Time

This chapter highlights the importance of careful consideration of time and space for meaningful replication. First, it shows that seemingly straightforward assumptions about variation over time and space do not hold. Instead, the many aspects that contribute to an organism's time and space lead to substantial ambiguity and often incompatible practice. In order to tackle this ubiquitous problem, it views the operational meaning of “time” and “space” from three different perspectives—exogenous, endogenous, and interactionist—which should not be conflated. It then illustrates the implications by presenting in a single table a wide range of paradigmatic examples grouped by spatiotemporal descriptors and reviewed sequentially from all three perspectives. Such a reconstruction of “time” and “space” within a general, pluralistic, and multi-faceted table is not only new but also a first important step to be further developed.

The Many Pasts of Detective Fiction

2020 ◽  
Vol 1 (2) ◽  
pp. 157-172
Author(s):  
Thomas Leitch
Keyword(s):  
Detective Fiction ◽  
Golden Age ◽  
Public History ◽  
Detective Novel ◽  
Sherlock Holmes ◽  
Detective Story ◽  
The Past ◽  
Wide Range ◽  
Detective Novels ◽  
The Many

Building on Tzvetan Todorov's observation that the detective novel ‘contains not one but two stories: the story of the crime and the story of the investigation’, this essay argues that detective novels display a remarkably wide range of attitudes toward the several pasts they represent: the pasts of the crime, the community, the criminal, the detective, and public history. It traces a series of defining shifts in these attitudes through the evolution of five distinct subgenres of detective fiction: exploits of a Great Detective like Sherlock Holmes, Golden Age whodunits that pose as intellectual puzzles to be solved, hardboiled stories that invoke a distant past that the present both breaks with and echoes, police procedurals that unfold in an indefinitely extended present, and historical mysteries that nostalgically fetishize the past. It concludes with a brief consideration of genre readers’ own ambivalent phenomenological investment in the past, present, and future each detective story projects.

Understanding Conformational Entropy in Small Molecules

2020 ◽  
Author(s):  
Lucian Chan ◽  
Garrett Morris ◽  
Geoffrey Hutchison
Keyword(s):  
Small Molecules ◽  
Degrees Of Freedom ◽  
Absolute Error ◽  
Low Energy ◽  
Standard Entropy ◽  
Free Energies ◽  
Conformational Entropy ◽  
Wide Range ◽  
High Degree ◽  
Empirical Corrections

The calculation of the entropy of flexible molecules can be challenging, since the number of possible conformers grows exponentially with molecule size and many low-energy conformers may be thermally accessible. Different methods have been proposed to approximate the contribution of conformational entropy to the molecular standard entropy, including performing thermochemistry calculations with all possible stable conformations, and developing empirical corrections from experimental data. We have performed conformer sampling on over 120,000 small molecules generating some 12 million conformers, to develop models to predict conformational entropy across a wide range of molecules. Using insight into the nature of conformational disorder, our cross-validated physically-motivated statistical model can outperform common machine learning and deep learning methods, with a mean absolute error ≈4.8 J/mol•K, or under 0.4 kcal/mol at 300 K. Beyond predicting molecular entropies and free energies, the model implies a high degree of correlation between torsions in most molecules, often as- sumed to be independent. While individual dihedral rotations may have low energetic barriers, the shape and chemical functionality of most molecules necessarily correlate their torsional degrees of freedom, and hence restrict the number of low-energy conformations immensely. Our simple models capture these correlations, and advance our understanding of small molecule conformational entropy.

Stability and Fluctuation of Personality Disorder Features in Daily Life

2018 ◽  
Author(s):  
Aidan G.C. Wright ◽  
Leonard Simms
Keyword(s):  
Personality Disorder ◽  
Daily Life ◽  
Daily Diary ◽  
Personality Pathology ◽  
Dynamic Processes ◽  
Diary Study ◽  
Daily Diary Study ◽  
Symptom Exacerbation ◽  
High Degree ◽  
Over Time

Very little is known about the daily stability and fluctuation of personality pathology. To address this gap in knowledge, we investigated the naturalistic manifestation of personality pathology over the course of 100 days. A group of individuals (N=101) diagnosed with any personality disorder (PD) completed a daily diary study over 100 consecutive days (Mdn = 94 days, Range = 33-101 days). Participants completed daily ratings of 30 manifestations of personality pathology. Patterns of stability and variability over the course of the study were then examined. Results indicated that individual PD manifestations and domains of PD manifestations were variable across days and differed widely in their frequency. Additionally, individual averages and level of variability in PD domains were highly stable across months, individual averages of PD domains were predicted by baseline dispositional ratings of PD traits with a high degree of specificity, and daily variability PD domains was associated with elevated levels of PD traits. This pattern of findings suggests that dynamic processes of symptom exacerbation and diminution that are stable in mean level and variability in expression over time characterizes personality pathology. Further, dispositional ratings are significant predictors of average daily expression of PD features.

Anti-corruption in History

2017 ◽  
Keyword(s):  
Financial Institutions ◽  
Global Media ◽  
Policy Makers ◽  
The Past ◽  
Human Wellbeing ◽  
Modern Period ◽  
Legitimate Power ◽  
Wide Range ◽  
Scant Attention ◽  
Over Time

Anticorruption in History is the first major collection of case studies on how past societies and polities, in and beyond Europe, defined legitimate power in terms of fighting corruption and designed specific mechanisms to pursue that agenda. It is a timely book: corruption is widely seen today as a major problem, undermining trust in government, financial institutions, economic efficiency, the principle of equality before the law and human wellbeing in general. Corruption, in short, is a major hurdle on the “path to Denmark”—a feted blueprint for stable and successful statebuilding. The resonance of this view explains why efforts to promote anticorruption policies have proliferated in recent years. But while the subjects of corruption and anticorruption have captured the attention of politicians, scholars, NGOs and the global media, scant attention has been paid to the link between corruption and the change of anticorruption policies over time and place. Such a historical approach could help explain major moments of change in the past as well as reasons for the success and failure of specific anticorruption policies and their relation to a country’s image (of itself or as construed from outside) as being more or less corrupt. It is precisely this scholarly lacuna that the present volume intends to begin to fill. A wide range of historical contexts are addressed, ranging from the ancient to the modern period, with specific insights for policy makers offered throughout.

Textual Transformations

2019 ◽  
Keyword(s):  
Early Modern ◽  
Financial Incentives ◽  
Book History ◽  
John Dryden ◽  
Book Production ◽  
Original Essays ◽  
Wide Range ◽  
Lucy Hutchinson ◽  
The Many ◽  
The Impact

This collection of twelve original essays by an international team of eminent scholars in the field of book history explores the many ways in which early modern books were subject to reworking, re-presentation, revision and reinterpretation. Their history is often the history of multiple, sometimes competing, agencies as their texts were re-packaged, redirected and transformed in ways that their original authors might hardly recognize. The essays discuss the processes of editing, revision, redaction, selection, abridgement, glossing, disputation, translation and posthumous publication that resulted in a textual elasticity and mobility that could dissolve distinctions between text and paratexts, textuality and intertextuality, manuscript and print, author and reader or editor, such that title and author’s name are no longer sufficient pointers to a book’s identity or contents. The essays are alive to the impact of commercial and technological aspects of book production and distribution (discussing, for example, the career of the pre-eminent bookseller John Nourse, the market appeal of abridgements, and the financial incentives to posthumous publication), but their interest is also in the many additional forms of agency that shaped texts and their meanings as books were repurposed to articulate, and respond to, a variety of cultural and individual needs. They engage with early modern religious, political, philosophical and scholarly trends and debates as they discuss a wide range of genres and kinds of publication (including fictional and non-fictional prose, verse miscellanies, abridgements, sermons, religious controversy) and of authors and booksellers (including Lucy Hutchinson, Richard Baxter, Thomas Burnet, Elizabeth Rowe, John Dryden, and Samuel Taylor Coleridge, Lucy Hutchinson, Henry Maundrell, John Nourse; Jonathan Swift, Samuel Richardson, John Tillotson, Isaac Watts and John Wesley).

Cerebellotrigeminal Dermal Dysplasia (Gómez-López-Hernández Syndrome)

2018 ◽  
Vol 16 (05) ◽  
pp. 362-368 ◽  
Author(s):  
Federica Sullo ◽  
Agata Polizzi ◽  
Stefano Catanzaro ◽  
Selene Mantegna ◽  
Francesco Lacarrubba ◽  
...  
Keyword(s):  
De Novo ◽  
Chromosomal Rearrangements ◽  
Number Of Patients ◽  
Wide Range ◽  
Visual Problems ◽  
Neurodevelopmental Abnormalities ◽  
Clinical Triad ◽  
High Degree ◽  
Motor Handicap

Cerebellotrigeminal dermal (CTD) dysplasia is a rare neurocutaneous disorder characterized by a triad of symptoms: bilateral parieto-occipital alopecia, facial anesthesia in the trigeminal area, and rhombencephalosynapsis (RES), confirmed by cranial magnetic resonance imaging. CTD dysplasia is also known as Gómez-López-Hernández syndrome. So far, only 35 cases have been described with varying symptomatology. The etiology remains unknown. Either spontaneous dominant mutations or de novo chromosomal rearrangements have been proposed as possible explanations. In addition to its clinical triad of RES, parietal alopecia, and trigeminal anesthesia, CTD dysplasia is associated with a wide range of phenotypic and neurodevelopmental abnormalities.Treatment is symptomatic and includes physical rehabilitation, special education, dental care, and ocular protection against self-induced corneal trauma that causes ulcers and, later, corneal opacification. The prognosis is correlated to the mental development, motor handicap, corneal–facial anesthesia, and visual problems. Follow-up on a large number of patients with CTD dysplasia has never been reported and experience is limited to few cases to date. High degree of suspicion in a child presenting with characteristic alopecia and RES has a great importance in diagnosis of this syndrome.

Using Motion Detection to Measure Social Polarization in the U.S. House of Representatives

2020 ◽  
pp. 1-10
Author(s):  
Bryce J. Dietrich
Keyword(s):  
Motion Detection ◽  
House Of Representatives ◽  
Social Science Research ◽  
Image Data ◽  
Science Research ◽  
Video Data ◽  
Social Scientists ◽  
Wide Range ◽  
Party Voting ◽  
The Many

Abstract Although previous scholars have used image data to answer important political science questions, less attention has been paid to video-based measures. In this study, I use motion detection to understand the extent to which members of Congress (MCs) literally cross the aisle, but motion detection can be used to study a wide range of political phenomena, like protests, political speeches, campaign events, or oral arguments. I find not only are Democrats and Republicans less willing to literally cross the aisle, but this behavior is also predictive of future party voting, even when previous party voting is included as a control. However, this is one of the many ways motion detection can be used by social scientists. In this way, the present study is not the end, but the beginning of an important new line of research in which video data is more actively used in social science research.

scholarly journals mtDNAcombine: tools to combine sequences from multiple studies

2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Eleanor F. Miller ◽  
Andrea Manica
Keyword(s):  
Sequence Data ◽  
Data Extraction ◽  
Bayesian Skyline Plot ◽  
Model Organisms ◽  
Data Sets ◽  
Data Handling ◽  
Online Database ◽  
Genetic Studies ◽  
Wide Range ◽  
Existing Data

Abstract Background Today an unprecedented amount of genetic sequence data is stored in publicly available repositories. For decades now, mitochondrial DNA (mtDNA) has been the workhorse of genetic studies, and as a result, there is a large volume of mtDNA data available in these repositories for a wide range of species. Indeed, whilst whole genome sequencing is an exciting prospect for the future, for most non-model organisms’ classical markers such as mtDNA remain widely used. By compiling existing data from multiple original studies, it is possible to build powerful new datasets capable of exploring many questions in ecology, evolution and conservation biology. One key question that these data can help inform is what happened in a species’ demographic past. However, compiling data in this manner is not trivial, there are many complexities associated with data extraction, data quality and data handling. Results Here we present the mtDNAcombine package, a collection of tools developed to manage some of the major decisions associated with handling multi-study sequence data with a particular focus on preparing sequence data for Bayesian skyline plot demographic reconstructions. Conclusions There is now more genetic information available than ever before and large meta-data sets offer great opportunities to explore new and exciting avenues of research. However, compiling multi-study datasets still remains a technically challenging prospect. The mtDNAcombine package provides a pipeline to streamline the process of downloading, curating, and analysing sequence data, guiding the process of compiling data sets from the online database GenBank.

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