A phylogenetic study of subgenus Polypompholyx: a parallel radiation of Utricularia (Lentibulariaceae) throughout Australasia

2010 ◽  
Vol 23 (3) ◽  
pp. 152 ◽  
Author(s):  
Markus S. Reut ◽  
Richard W. Jobson
Keyword(s):  
Dna Sequences ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Floral Colour ◽  
Phylogenetic Study ◽  
Strict Consensus Tree ◽  
Morphological Heterogeneity ◽  
Sexual Mimicry ◽  
Jackknife Support ◽  
Parallel Radiation

Phylogenetic relationships among 26 of the 37 recognised taxa of Utricularia subgenus Polypompholyx sensu Müller & Borsch were assessed by cladistic analysis of DNA sequences from the plastid rps16 intron. We also examined the placement of the recently described U. simmonsii (sect. Minutae), which was reported to share some morphological characters with subgenus Polypompholyx. We found strong jackknife support for a monophyletic subgenus Polypompholyx lineage; however, our strict consensus tree shows an unresolved relationship between the sections Polypompholyx and Pleiochasia. Within the section Pleiochasia, we found two supported clades, generally differing in a more northern or southern distribution. Despite high levels of morphological heterogeneity and convergence, we found some clade-specific character homogeneity within these two clades, particularly that of growth and bladder-trap form, and floral structure. Bladder-trap form corresponds most strongly with terrestrial v. aquatic habits. The evolution of filiform corolla appendages corresponds with floral colour, and is possibly associated with sexual mimicry, with those of the upper corolla arising twice independently. Furthermore, we found that U. monanthos and U. novae-zelandiae remain synonyms of U. dichotoma, and that U. simmonsii is not included in the subgenus Polypompholyx, but instead is allied with sections Stomoisia and Enskide of subgenus Bivalvaria.

A cladistic analysis of the Old World species of Lotus L. (Fabaceae: Loteae)

2000 ◽  
Vol 78 (3) ◽  
pp. 351-360 ◽  
Author(s):  
Ana M Arambarri
Keyword(s):  
Cladistic Analysis ◽  
Morphological Characters ◽  
Comparison Method ◽  
Data Matrix ◽  
Consensus Tree ◽  
Strict Consensus Tree ◽  
World Species ◽  
Old World ◽  
Species Phylogeny ◽  
The World

The diagnostic characters of the genus Lotus L. are a claw with a thickened infolded margin, diadelphous stamens, and a style hardened from the base. This genus contains about 100 species that are distributed throughout the world. To investigate the phylogeny of the Old World species of Lotus, subgenus Edentolotus, sections Krokeria, Xantholotus, and Erythrolotus, a cladistic analysis was performed using 31 morphological characters. To test the phylogenetic relationships among species of Lotus-Edentolotus and Dorycnium, Pedrosia, and Tetragonolobus, these taxa were included as part of the ingroup. The polarity of the characters was based on the outgroup comparison method, using Anthyllis as one outgroup and Tripodion as another. The analysis with Anthyllis as outgroup yielded eight equally parsimonious trees (with all characters equally weighted), each with 62 steps, a consistency index of 0.53, and a retention index of 0.75. All trees (including the strict consensus tree from the eight initial trees) showed that genus Lotus, subgenus Edentolotus, and sections Xantholotus and Erythrolotus are polyphyletic, with only section Krokeria appearing as monophyletic. On the other hand, the groups of species Lotus angustissimus, Lotus corniculatus, Lotus creticus, and Lotus peregrinus are monophyletic. Identical results were derived from the data matrix using Tripodion as the outgroup. Results are compared with previous cytogenetic and biochemical evidence.Key words: cladistic analysis, Fabaceae, Loteae, Lotus, Old World species, phylogeny.

scholarly journals Phylogenetic relationships within the Pylochelidae (Decapoda: Anomura: Paguroidea): A cladistic analysis based on morphological characters

Zootaxa ◽  
2009 ◽  
Vol 2022 (1) ◽  
pp. 1-14 ◽  
Author(s):  
RAFAEL LEMAITRE ◽  
PATSY A. MCLAUGHLIN ◽  
ULF SORHANNUS
Keyword(s):  
Hermit Crab ◽  
Phylogenetic Relationships ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Data Matrix ◽  
Parsimony Analysis ◽  
Consensus Tree ◽  
Strict Consensus Tree ◽  
The Family

Phylogenetic relationships within the “symmetrical” hermit crab family Pylochelidae were analyzed for 41 of the 45 species and subspecies currently considered valid. In the analyses, 78 morphological characters comprised the data matrix and the outgroup consisted of Thalassina anomala, a member of the Thalassinidae, and Munida quadrispina, a member of the Galatheidae. A poorly resolved strict consensus tree was obtained from a heuristic parsimony analysis of unweighted and unordered characters, which showed the family Pylochelidae and the subfamilies Pylochelinae and Pomatochelinae to be monophyletic taxa – the latter two groups had the highest Bremer support values. Additionally, while the subgenus Pylocheles (Pylocheles) was strongly supported, the subgenera Xylocheles, and Bathycheles were not. More fully resolved trees were obtained when using implied weighting, which recognized the monotypic subfamilies Parapylochelinae, Cancellochelinae and Mixtopagurinae. The subfamily Trizochelinae was found to have four distinct clades and several ambiguously placed taxa.

Magnolia sinostellata and relatives (Magnoliaceae)

Phytotaxa ◽  
2013 ◽  
Vol 154 (1) ◽  
pp. 47 ◽  
Author(s):  
YA-LING WANG ◽  
ERLAND EJDER ◽  
JIAN-FEN YANG ◽  
RAO LIU ◽  
LI-MING YE ◽  
...  
Keyword(s):  
Dna Sequences ◽  
Plastid Dna ◽  
Distinct Species ◽  
Morphological Characters ◽  
Phylogenetic Study ◽  
Wild Populations ◽  
Species Status ◽  
Separate Species ◽  
Magnolia Sinostellata ◽  
Normal Meiosis

Magnolia sinostellata has been considered a synonym of Magnolia stellata by several taxonomists due to many shared morphological characters. With similar leaves and twigs, Magnolia amoena is distributed in areas near M. sinostellata. These three species were studied by comparing morphological, cytological and palynological characters, creating a maximum parsimony phylogenetic tree based on plastid DNA sequences and studying these taxa in the field. The results are as follows: M. sinostellata is a diploid, 2n=2x=38, and there are heterozygotes with paracentric inversion chromosomes in wild populations. Magnolia stellata is also a diploid, and there are heterozygotes with pericentric inversion chromosomes in wild populations. The abnormal chromosome behaviour in meiosis has serious effects on survival of the two species. Magnolia amoena is diploid with more or less normal meiosis except for a few lagging chromosomes in anaphase I and II. Magnolia stellata has a more complicated exine sculpture than the other two; exine structure is different in all three species. Separate species status for M. sinostellata is also supported by results of the plastid DNA phylogenetic study. Distributions, population descriptions and observations are provided, and based on all the evidence presented we conclude that M. sinostellata is a distinct species in M. subgenus Yulania. 

Platypodidae under scrutiny

2000 ◽  
Vol 14 (6) ◽  
pp. 771 ◽  
Author(s):  
Guillermo Kuschel ◽  
Richard A. B. Leschen ◽  
Elwood C. Zimmerman
Keyword(s):  
Type Species ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Single Step ◽  
Phylogenetic Study ◽  
The Family ◽  
The Status

The historical status of the family Platypodidae is reviewed and the family is revised. Results of a cladistic analysis based on 35 terminal taxa and 80 adult morphological characters show that the current placement of Platypodidae makes the subfamily Scolytinae paraphyletic. Moreover, several important genera included in Scolytinae are shown to be members of Cossoninae (i.e. the placement of Protoplatypus Wood and Phylloplatypus Kato in Cossoninae is confirmed). Based on these results, the status of Platypodidae as a family and subfamily is rejected, Scolytinae thereby becoming a monophyletic taxon. Araucarius groups in Scolytinae instead of Cossoninae in the analysis on a single step only, but it is suggested that it be retained in Cossoninae until this subfamily is submitted to a similar phylogenetic study. Three genera and four species of Cossoninae are described as new: Dobionus Kuschel, gen. nov.: type species D. araucarinus Kuschel, sp. nov. (with the inclusion of D. brachyrhinus (Montrouzier)); Coptonus Kuschel, gen. nov.: type species C. fijianus Kuschel, sp. nov. (with the inclusion of C. papuanus Kuschel, sp. nov.) and Dissostomus Kuschel, gen. nov.: type species D. hornabrooki Kuschel, sp. nov.

A revision of Leydigia Kurz, 1875 (Anomopoda, Cladocera, Branchiopoda), and subgeneric differentiation within the genus

Zootaxa ◽  
2009 ◽  
Vol 2082 (1) ◽  
pp. 1-84 ◽  
Author(s):  
ALEXEY A. KOTOV
Keyword(s):  
Majority Rule ◽  
Type Species ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Species Group ◽  
Consensus Tree ◽  
Strict Consensus Tree ◽  
Bootstrap Simulation ◽  
Group A ◽  
Exact Identification

A revision of the genus Leydigia Kurz, 1875 (Anomopoda, Cladocera, Branchiopoda) is presented. The list of all species-group nominal taxa consists of 34 published and 3 unpublished names. Of these, 12 species are accepted as valid: (1) Leydigia (Leydigia) leydigi (Schödler, 1863); (2) L. (L.) louisi Jenkin, 1934 with two subspecies L. louisi louisi Jenkin, 1934 and L. louisi mexicana Kotov, Elías-Gutiérrez et Nieto, 2003; (3) Leydigia (Neoleydigia) propinqua Sars, 1903; (4) L. (N.) australis Sars, 1885; (5) L. (N.) microps Sars, 1916; (6) L. (N.) sp. nov. from 'L. acanthocercoides' in Alonso, 1996; (7) L. (N.). macrodonta Sars, 1916; (8) L. (N.) acanthocercoides (Fischer, 1854); (9) L. (N.). laevis Gurney, 1927; (10) L. (N.) cf. ipojucae Brehm, 1939; (11) L. (N.) ciliata Gauthier, 1939; (12) L. (N.) cf. striata Birabén, 1939. Lectotypes are selected for 3, 5, 7, and 9. Exact identification of 10 and 12 is not possible without examination of material from type localities and neotype selection. As confirmed by examination of authors' type material, some taxa (Leydigia africana Gurney, 1904 and Leydigia ankammaraoi Prasad, Santa Kumari et Bose, 1985) prove to be junior synonyms of previously described species; species 8-12 form a compact acanthocercoides-group, with fine differences among members. A cladistic analysis for 13 studied taxa and 18 morphological characters resulted in four most-parsimonious trees (TL = 32; CI = 0.78), which differ only in the grouping of members of the L. acanthocercoides-group. A slightly polytomic strict consensus tree (the 50% majority rule bootstrap simulation led to a tree of similar topology to the contree), as well as some 'orthodox' ideas on the evolution of the genus (not contradicting each other), are used to subdivide the genus into two subgenera, Leydigia (Leydigia) Kurz, 1875 and Leydigia (Neoleydigia) subgen. nov. L. (N.) acanthocercoides is the type species of the latter. A key for the identification of well-known species of Leydigia is provided. The level of description of representatives of the genus Leydigia in different continents is estimated, and perspectives for further investigations are outlined.

Phylogenetics of Paepalanthus (Eriocaulaceae), a diverse Neotropical monocot lineage

2020 ◽  
Vol 195 (1) ◽  
pp. 34-52
Author(s):  
Caroline O Andrino ◽  
Paulo T Sano ◽  
Peter W Inglis ◽  
Nancy Hensold ◽  
Fabiane N Costa ◽  
...  
Keyword(s):  
South America ◽  
Phylogenetic Reconstruction ◽  
Morphological Characters ◽  
Phylogenetic Study ◽  
Likelihood Methods ◽  
Representative Sampling ◽  
Morphological Heterogeneity ◽  
Maximum Likelihood Methods ◽  
Nuclear Its

Abstract Paepalanthus is a diverse monocot genus with remarkable diversity distributed in the Neotropical highlands of South America. The genus comprises 410 species arranged in subgenera, sections, subsections and series. Added to this complex classification, Paepalanthus shows considerable morphological heterogeneity and includes three other genera in it, Actinocephalus (Körn.) Sano, Lachnocaulon Kunth and Tonina Aubl. A broadly sampled phylogenetic inference for the genus is still missing, precluding a better understanding of its delimitation and further studies in the group. Here we present the most comprehensive phylogenetic study for Paepalanthus to date, as well as morphological survey of characters that delimit the main lineages found. We assembled a morphologically and geographically representative sampling of Paepalanthus and associated genera comprising 356 accessions in a combined dataset of plastid (trnL-F, psbA-trnH) and nuclear (ITS, ETS) regions. Bayesian inference and maximum likelihood methods were used for phylogenetic reconstruction. We found that Paepalanthus and 16 of its 28 infrageneric categories are not monophyletic, as well as the closely related genus Actinocephalus. Thirty-six well-supported clades are recognized. Morphological characters show high levels of homoplasy, and concepts traditionally used in the classification of Paepalanthus were found to be inconsistent. We confirmed that Paepalanthus as currently circumscribed is not monophyletic and revealed several new relationships in Eriocaulaceae. To make Paepalanthus monophyletic, the genus must be re-circumscribed. These results also provide a foundation for future investigations of the diversification and evolution of flora of the Neotropical highlands of South America.

Phylogenetic reappraisal and taxonomic review of the Empis (Coptophlebia) hyalipennis-group (Diptera:Empididae:Empidinae)

2011 ◽  
Vol 25 (3) ◽  
pp. 254 ◽  
Author(s):  
Christophe Daugeron ◽  
Adrian Plant ◽  
Igor Shamshev ◽  
Andreas Stark ◽  
Patrick Grootaert
Keyword(s):  
New Species ◽  
Type Species ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Palaearctic Species ◽  
Single Tree ◽  
Taxonomic Review ◽  
Morphological Heterogeneity ◽  
Three New Species ◽  
Future Revision

The Empis (Coptophlebia) hyalipennis-group is redefined, keyed, cladistically analysed and three new species, Empis doi, sp. nov., Empis pseudohystrichopyga, sp. nov. and Empis pseudovillosipes, sp. nov., are described (from Thailand, China and Taiwan respectively). A cladistic analysis of 27 adult morphological characters was performed for Empis hyalipennis (the type-species of the subgenus Coptophlebia), and 13 Nearctic, Oriental and Palaearctic species hypothesised as being closely related, which resulted in a single tree of 31 steps (CI = 0.96; RI = 0.98). Monophyly of the group was established on the basis of two apomorphic characters of the male hypopygium. Based on these results and previous studies of the Empis-Coptophlebia complex of subgenera within the genus Empis, the E. (C.) hyalipennis-group appears to be much richer in species, exhibit greater morphological heterogeneity and be more widely distributed than expected. It is strongly recommended that any future revision of the subfamily Empidinae should apply the name Coptophlebia only to the monophyletic Empis (Coptophlebia) hyalipennis-group defined in this study.

scholarly journals A phylogenetic analysis of the Gruiformes (Aves) based on morphological characters, with an emphasis on the rails (Rallidae)

1998 ◽  
Vol 353 (1378) ◽  
pp. 2077-2151 ◽  
Author(s):  
B. C. Livezey
Keyword(s):  
Cladistic Analysis ◽  
Morphological Characters ◽  
Consensus Tree ◽  
Strict Consensus Tree ◽  
Sister Relationship ◽  
Species Complexes ◽  
Basal Group ◽  
Close Relationship ◽  
The Matrix ◽  
Porphyrio Porphyrio

The order Gruiformes, for which even familial composition remains controversial, is perhaps the least well understood avian order from a phylogenetic perspective. The history of the systematics of the order is presented, and the ecological and biogeographic characteristics of its members are summarized. Using cladistic techniques, phylogenetic relationships among fossil and modern genera of the Gruiformes were estimated based on 381 primarily osteological characters; relationships among modern species of Grues (Psophiidae, Aramidae, Gruidae, Heliornithidae and Rallidae) were assessed based on these characters augmented by 189 characters of the definitive integument. A strict consensus tree for 20,000 shortest trees compiled for the matrix of gruiform genera (length = 967, CI = 0.517) revealed a number of nodes common to the solution set, many of which were robust to bootstrapping and had substantial support (Bremer) indices. Robust nodes included those supporting: a sister relationship between the Pedionomidae and Turnicidae; monophyly of the Gruiformes exclusive of the Pedionomidae and Turnicidae; a sister relationship between the Cariamidae and Phorusrhacoidea; a sister relationship between a clade comprising Eurypyga and Messelornis and one comprising Rhynochetos and Aptornis ; monophyly of the Grues (Psophiidae, Aramidae, Gruidae, Heliornithidae and Rallidae); monophyly of a clade (Gruoidea) comprising (in order of increasingly close relationship) Psophia , Aramus , Balearica and other Gruidae, with monophyly of each member in this series confirmed; a sister relationship between the Heliornithidae and Rallidae; and monophyly of the Rallidae exclusive of Himantornis . Autapomorphic divergence was comparatively high for Pedionomus , Eurypyga , Psophia , Himantornis and Fulica ; extreme autapomorphy, much of which is unique for the order, characterized the extinct, flightless Aptornis . In the species–level analysis of modern Grues, special efforts were made to limit the analytical impacts of homoplasy related to flightlessness in a number of rallid lineages. A strict consensus tree of 20,000 shortest trees compiled (length = 1232, CI = 0.463) confirmed the interfamilial relationships resolved in the ordinal analysis and established a number of other, variably supported groups within the Rallidae. Groupings within the Rallidae included: monophyly of Rallidae exclusive of Himantornis and a clade comprising Porphyrio (including Notornis ) and Porphyrula ; a poorly resolved, basal group of genera including Gymnocrex , Habroptila , Eulabeornis , Aramides , Canirallus and Mentocrex ; an intermediate grade comprising Anurolimnas , Amaurolimnas , and Rougetius ; monophyly of two major subdivisions of remaining rallids, one comprising Rallina (paraphyletic), Rallicula , and Sarothrura , and the other comprising the apparently paraphyletic ‘long–billed’ rails (e.g. Pardirallus , Cyanolimnas , Rallus , Gallirallus and Cabalus and a variably resolved clade comprising ‘crakes’ (e.g. Atlantisia , Laterallus and Porzana , waterhens ( Amaurornis ), moorhens ( Gallinula and allied genera) and coots ( Fulica ). Relationships among ‘crakes’ remain poorly resolved; Laterallus may be paraphyletic, and Porzana is evidently polyphyletic and poses substantial challenges for reconciliation with current taxonomy. Relationships among the species of waterhens, moorhens and coots, however, were comparatively well resolved, and exhaustive, fine–scale analyses of several genera ( Grus , Porphyrio , Aramides , Rallus , Laterallus and Fulica ) and species complexes ( Porphyrio porphyrio –group, Gallirallus philippensis –group and Fulica americana –group) revealed additional topological likelihoods. Many nodes shared by a majority of the shortest trees under equal weighting were common to all shortest trees found following one or two iterations of successive weighting of characters. Provisional placements of selected subfossil rallids (e.g. Diaphorapteryx , Aphanapteryx and Capellirallus ) were based on separate heuristic searches using the strict consensus tree for modern rallids as a backbone constraint. These analyses were considered with respect to assessments of robustness, homoplasy related to flightlessness, challenges and importance of fossils in cladistic analysis, previously published studies and biogeography, and an annotated phylogenetic classification of the Gruiformes is proposed.

Phylogeny of the family Spongicolidae (Crustacea: Stenopodidea): evolutionary trend from shallow-water free-living to deep-water sponge-associated habitat

2003 ◽  
Vol 83 (1) ◽  
pp. 119-131 ◽  
Author(s):  
Tomomi Saito ◽  
Masatsune Takeda
Keyword(s):  
Deep Water ◽  
Cladistic Analysis ◽  
Morphological Characters ◽  
Evolutionary Trend ◽  
Consensus Tree ◽  
Strict Consensus Tree ◽  
Free Living ◽  
The Family ◽  
Outgroup Species ◽  
Hexactinellid Sponges

The phylogenetic relationships within the family Spongicolidae were examined based on a cladistic analysis of 38 adult morphological characters with reference to two outgroup species of the family Stenopodidae. The strict consensus tree identified Microprosthema as the most basal genus, followed by Paraspongicola, Spongicola and the remaining genera. The Spongicoloides represents the most derived genus among spongicolids. The genera Spongicola, Spongicoloides and Spongiocaris should be redefined, because they formed paraphyletic clades. The cladogram indicates that symbiosis with the hexactinellid sponges is coincident with the loss of gills, exopods on maxillipeds 2 and 3, and with the loss of spination on carapace, pereopods, abdomen, tail fan etc. These losses in the spongicolids are thought to be secondarily derived in relation to their sponge-associated habitat.

Sign in / Sign up

Export Citation Format

Share Document