scholarly journals Toward a trophic theory of species diversity

2015 ◽  
Vol 112 (37) ◽  
pp. 11415-11422 ◽  
Author(s):  
John W. Terborgh

Efforts to understand the ecological regulation of species diversity via bottom-up approaches have failed to yield a consensus theory. Theories based on the alternative of top-down regulation have fared better. Paine’s discovery of keystone predation demonstrated that the regulation of diversity via top-down forcing could be simple, strong, and direct, yet ecologists have persistently failed to perceive generality in Paine’s result. Removing top predators destabilizes many systems and drives transitions to radically distinct alternative states. These transitions typically involve community reorganization and loss of diversity, implying that top-down forcing is crucial to diversity maintenance. Contrary to the expectations of bottom-up theories, many terrestrial herbivores and mesopredators are capable of sustained order-of-magnitude population increases following release from predation, negating the assumption that populations of primary consumers are resource limited and at or near carrying capacity. Predationsensu lato(to include Janzen–Connell mortality agents) has been shown to promote diversity in a wide range of ecosystems, including rocky intertidal shelves, coral reefs, the nearshore ocean, streams, lakes, temperate and tropical forests, and arctic tundra. The compelling variety of these ecosystems suggests that top-down forcing plays a universal role in regulating diversity. This conclusion is further supported by studies showing that the reduction or absence of predation leads to diversity loss and, in the more dramatic cases, to catastrophic regime change. Here, I expand on the thesis that diversity is maintained by the interaction between predation and competition, such that strong top-down forcing reduces competition, allowing coexistence.

2019 ◽  
Vol 50 (1) ◽  
pp. 169-190 ◽  
Author(s):  
James C. Russell ◽  
Christopher N. Kaiser-Bunbury

The rate of non-native species introductions continues to increase, with directionality from continents to islands. It is no longer single species but entire networks of coevolved and newly interacting continental species that are establishing on islands. The consequences of multispecies introductions on the population dynamics and interactions of native and introduced species will depend on the form of trophic limitation on island ecosystems. Freed from biotic constraints in their native range, species introduced to islands no longer experience top-down limitation, instead becoming limited by and disrupting bottom-up processes that dominate on resource-limited islands. This framing of the ecological and evolutionary relationships among introduced species with one another and their ecosystem has important consequences for conservation. Whereas on continents the focus of conservation is on restoring native apex species and top-down limitation, on islands the focus must instead be on removing introduced animal and plant species to restore bottom-up limitation.


1999 ◽  
Vol 69 (3) ◽  
pp. 297-330 ◽  
Author(s):  
Bruce A. Menge ◽  
Bryon A. Daley ◽  
Jane Lubchenco ◽  
Eric Sanford ◽  
Elizabeth Dahlhoff ◽  
...  

2013 ◽  
Vol 71 (2) ◽  
pp. 406-416 ◽  
Author(s):  
T. O. M. Reilly ◽  
H. M. Fraser ◽  
R. J. Fryer ◽  
J. Clarke ◽  
S. P. R. Greenstreet

Abstract Reilly, T. O. M., Fraser, H. M., Fryer, R. J., Clarke, J., and Greenstreet, S. P. R. 2014. Interpreting variation in fish-based food web indicators: the importance of “bottom-up limitation” and “top-down control” processes. – ICES Journal of Marine Science, 71: 406–416. Proposed indicators for the Marine Strategy Framework Directive (MSFD) food webs Descriptor focus on structural elements of food webs, and in particular on the abundance and productivity of top predators. However, the inferences that can be drawn from such indicators depend on whether or not the predators are “bottom-up limited” by the availability of their prey. Many seabird populations appear to be “bottom-up limited” so that variation in their reproductive success and/or abundance reflects changes in lower trophic levels. Here we find that gadoid fish predators off the Firth of Forth, southeast Scotland, do not appear to be “bottom-up limited” by the biomass of their main prey, 0-group sandeels; gadoid biomass and feeding performance was independent of sandeel biomass. Variability in food web indicators based on these gadoid predators seems to impart little insight into underlying processes occurring at lower trophic levels in the local food web. The implications of this in terms of how the currently proposed MSFD food web indicators should be used and interpreted are considered, and the ramifications in terms of setting targets representing good environmental status for both fish and seabird communities are discussed.


2017 ◽  
Vol 7 (10) ◽  
pp. 3520-3531 ◽  
Author(s):  
Bastien Castagneyrol ◽  
Damien Bonal ◽  
Maxime Damien ◽  
Hervé Jactel ◽  
Céline Meredieu ◽  
...  

2016 ◽  
Vol 10 (1) ◽  
pp. 3-3
Author(s):  
Nobuyuki Moronuki

Regular micro/nanostructures or textures provide such functions as optical or friction properties, but neither texture design nor the texturing process has been well developed. Functional texture is often inspired by natural designs, with the microstructure on the surface of lotus leaves or the nanostructure on the bottoms of geckos’ feet often cited as examples. “Biomimetic” has become a keyword in state-of-the-art technologies. Processes are also important because functional textures require a wide range of structural dimensions, from nanometers to micrometers. Top-down processes such as cutting or energy beam processing are often used and are based on the copying principle. Bottom-up processes include the self-assembly of particles and the anodic oxidation of aluminum. As the principle behind bottom-up processes is completely different from that behind top-down processes, special attention is warranted. Furthermore, material deposition can effect drastic changes in surface functionality. This special issue features nine papers, including eight studies and one review paper, classified into the following topics: - Biomimetic design of functions - Top-down or cutting texturing processes - Bottom-up or self-organization texturing processes - Measurement system for textures - Optical applications - Optical applications - Adhesive applications - Biomedical applications These papers present the latest advances in texturing processes, functional design, and realization or demonstration. Learning more about these advances will enable readers toshare their knowledge and experience in technologies, development, and potential texturing applications. In closing, I would like to express my sincere gratitude to the authors and reviewers for their interesting and enlightening contributions to this special issue.


Viruses ◽  
2021 ◽  
Vol 13 (4) ◽  
pp. 668
Author(s):  
Yogy Simanjuntak ◽  
Kira Schamoni-Kast ◽  
Alice Grün ◽  
Charlotte Uetrecht ◽  
Pietro Scaturro

RNA viruses cause a wide range of human diseases that are associated with high mortality and morbidity. In the past decades, the rise of genetic-based screening methods and high-throughput sequencing approaches allowed the uncovering of unique and elusive aspects of RNA virus replication and pathogenesis at an unprecedented scale. However, viruses often hijack critical host functions or trigger pathological dysfunctions, perturbing cellular proteostasis, macromolecular complex organization or stoichiometry, and post-translational modifications. Such effects require the monitoring of proteins and proteoforms both on a global scale and at the structural level. Mass spectrometry (MS) has recently emerged as an important component of the RNA virus biology toolbox, with its potential to shed light on critical aspects of virus–host perturbations and streamline the identification of antiviral targets. Moreover, multiple novel MS tools are available to study the structure of large protein complexes, providing detailed information on the exact stoichiometry of cellular and viral protein complexes and critical mechanistic insights into their functions. Here, we review top-down and bottom-up mass spectrometry-based approaches in RNA virus biology with a special focus on the most recent developments in characterizing host responses, and their translational implications to identify novel tractable antiviral targets.


2017 ◽  
Author(s):  
Emanuel A. Fronhofer ◽  
Delphine Legrand ◽  
Florian Altermatt ◽  
Armelle Ansart ◽  
Simon Blanchet ◽  
...  

AbstractOrganisms rarely experience a homogeneous environment. Rather, ecological and evolutionary dynamics unfold in spatially structured and fragmented landscapes, with dispersal as the central process linking these dynamics across spatial scales. Because dispersal is a multi-causal and highly plastic life-history trait, finding general drivers that are of importance across species is challenging but highly relevant for ecological forecasting.We here tested whether two fundamental ecological forces and main determinants of local population dynamics, top-down and bottom-up control, generally explain dispersal in spatially structured communities. In a coordinated distributed experiment spanning a wide range of actively dispersing organisms, from protozoa to vertebrates, we show that bottom-up control, that is resource limitation, consistently increased dispersal. While top-down control, that is predation risk, was an equally important dispersal driver as bottom-up control, its effect depended on prey and predator space use and whether dispersal occurred on land, in water or in the air: species that routinely use more space than their predators showed increased dispersal in response to predation, specifically in aquatic environments. After establishing these general causes of dispersal, we used a metacommunity model to show that bottom-up and top-down control of dispersal has important consequences for local population fluctuations as well as cascading effects on regional metacommunity dynamics. Context-dependent dispersal reduced local population fluctuations and desynchronized dynamics between communities, two effects that increase population and community stability.Our study provides unprecedented insights into the generality of the positive resource dependency of dispersal as well as a robust experimental test of current theory predicting that predator-induced dispersal is modulated by prey and predator space use. Our experimental and theoretical work highlights the critical importance of the multi-causal nature of dispersal as well as its cascading effects on regional community dynamics, which are specifically relevant to ecological forecasting.


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