The Association of Genetic Variations in the Promoter Region ofMyostatinGene with Growth Traits in Duroc Pigs

2012 ◽  
Vol 23 (4) ◽  
pp. 291-298 ◽  
Author(s):  
Po-An Tu ◽  
Jen-Wen Shiau ◽  
Shih-Torng Ding ◽  
En-Chung Lin ◽  
Ming-Che Wu ◽  
...  
2019 ◽  
Vol 62 (1) ◽  
pp. 189-197 ◽  
Author(s):  
Hongwei Xu ◽  
Xiaoyu Zhang ◽  
Rongxin Zang ◽  
Yong Cai ◽  
Xin Cao ◽  
...  

Abstract. As a nicotinamide adenine dinucleotide (NAD)-dependent histone deacetylase and ADP ribosyl transferase, the silent information regulator 7 (Sirtuin 7, SIRT7) plays a crucial role in regulating the differentiation of adipocytes and myoblasts, lipid metabolism, glucose metabolism, and cellular growth in mammals. It has been hypothesized that SIRT7 affects growth traits in animals; therefore, in this study, the potential insertion/deletion (indel) of genetic variations within the ovine SIRT7 gene and their correlation with sheep growth traits were explored. A total of 709 individuals from five Chinese and Mongolian sheep breeds were analyzed. Two novel indel loci of the sheep SIRT7 gene were detected and were named 5′ promoter region-insertion-7 bp (5′ promoter region-7 bp) and 3′ UTR-insertion-17 bp (3′ UTR-17 bp), respectively. In all of the sheep breeds, frequencies of the 5′ promoter region-7 bp mutation were low, whereas mutations of 3′ UTR-17 bp were high in Tong sheep and Lanzhou fat-tail sheep (LFTS). Furthermore, both indel polymorphisms had significant associations with different growth characteristics (P<0.05). Among these associations, the 3′ UTR-17 bp was highly correlated with rump width in small-tail Han sheep (STHS, rams; P<0.01), and individuals with the ID genotype had better chest depth values than those with the II genotype. In this paper, two novel indels within the sheep SIRT7 gene were identified, and genetic diversity and its effects on body size traits were explored. These findings will potentially provide useful DNA markers for the improvement of economic traits in sheep genetic breeding.


2018 ◽  
Vol 42 (3) ◽  
Author(s):  
Tety Hartatik ◽  
Dwi Ahmad Priyadi ◽  
Ali Agus ◽  
Sigit Bintara ◽  
I Gede Suparta Budisatria ◽  
...  

This study focused on the promoter region of the SRY gene with 1,281 bp DNA fragments, including 5'UTR, CAAT signal, and TATA box. Genomic samples of 19 cattle were obtained from Wagyu-BX (n = 2), BX (n = 5), Simmental (n = 2), Limousin (n = 2), Ongole (n = 2), Madura (n = 2), Bali (n = 2), Nellore (n = 1), and Hereford (n = 1). Two flanking primers (forward and reverse) were used for polymerase chain reaction (PCR). The PCR products were then sequenced by using a two-way primer. The obtained sequences were aligned with clustalW software to determine the differences in the nucleotide base arrangement which compiled the promoter region of the SRY gene. The cattle crossbreeding was done as an effort to improve the genetic variations and qualities. The SRY gene is a marker gene inherited from the male side (bull), so the SRY gene is expected to be used as a marker to monitor the crossbreeding. The monitoring of the crossbreed cattle is an initial effort to increase the genetic variations and enhance the genetic qualities without threatening the germplasm purity. The results of this study showed that the overall sample is monomorphic, except for Bali and Nellore cattle. Further research is needed by expanding the analysis area of the SRY gene and increasing the number of samples.


2019 ◽  
Vol 31 (2) ◽  
pp. 107-114 ◽  
Author(s):  
Sihuan Zhang ◽  
Haiyu Zhao ◽  
Chuzhao Lei ◽  
Chuanying Pan ◽  
Hong Chen ◽  
...  

2018 ◽  
Vol 61 (3) ◽  
pp. 329-336 ◽  
Author(s):  
Hailong Yan ◽  
Enhui Jiang ◽  
Haijing Zhu ◽  
Linyong Hu ◽  
Jinwang Liu ◽  
...  

Abstract. The paired-like homeodomain 2 (PITX2) gene plays a critical role in regulating development, reproduction, and growth traits in ruminants. Hence, the objective of this study was to explore the polymorphisms of this gene and to evaluate their associations with quantitative traits. Herein, a novel insertion in the promoter region of the PITX2 gene was reported in Shaanbei white cashmere (SBWC) goats (n=1012). The genotype distributions between mothers of single-kid and multi-kid groups within SBWC goats were significantly different (P<0.01), implying that this indel mutation might affect the litter size. Furthermore, association analysis found that this indel mutation was significantly associated with litter size (P=0.001). Individuals with genotype DD had a significantly smaller litter size than those with other genotypes (P<0.01). Besides, this indel was significantly associated with the body length (P=0.042) and the chest width (P=0.031). Especially, the individuals with genotype DD had a significantly lower body length than those with genotype II (P<0.05), which was consistent with the trend in litter size. These findings suggested that the new 22 bp indel mutation within the PITX2 gene is significantly associated with litter size and growth traits; this can be utilized as a functional molecular marker in goat breeding.


2014 ◽  
Vol 46 (1) ◽  
pp. 16-22 ◽  
Author(s):  
Y. Bai ◽  
J. B. Zhang ◽  
Y. Xue ◽  
Y. L. Peng ◽  
G. Chen ◽  
...  

2005 ◽  
Vol 21 (1) ◽  
pp. 3-7 ◽  
Author(s):  
Xiao Feng Zhou ◽  
Jing Cui ◽  
Anita L. DeStefano ◽  
Irmarie Chazaro ◽  
Lindsay A. Farrer ◽  
...  

Genetic variations that predispose individuals to complex disorders, such as essential hypertension, may be found in gene coding regions, intronic regions or in gene promoter regions. Most studies have focused on gene variations that result in amino acid substitutions because they result in different isoforms of the protein, presumably resulting in differences in protein properties. Less attention has been placed on the role of intronic or promoter mutations. In this report, we examined two single nucleotide polymorphisms (SNPs) in the catalase (CAT) gene prompter region in a cohort of hypertensive Caucasians and African Americans with a Mass Spec based Homogenous MassEXTEND assay. We found an association when a specific combination of the two promoter SNPs was examined in Caucasians. No association was observed in African Americans. Our data suggest that genetic variations in the promoter region of catalase gene influence the susceptibility to essential hypertension. In addition, the genetic factors that contribute to hypertension maybe different between ethnic groups.


Gene ◽  
2014 ◽  
Vol 546 (2) ◽  
pp. 206-213 ◽  
Author(s):  
Zi-nian Wang ◽  
Mi-jie Li ◽  
Xian-yong Lan ◽  
Ming-xun Li ◽  
Chu-zhao Lei ◽  
...  

2006 ◽  
Vol 33 (10) ◽  
pp. 901-907 ◽  
Author(s):  
Kai XUE ◽  
Hong CHEN ◽  
Shan WANG ◽  
Xin CAI ◽  
Bo LIU ◽  
...  

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