scholarly journals Time-Independent Prediction of Burn Depth Using Deep Convolutional Neural Networks

2019 ◽  
Vol 40 (6) ◽  
pp. 857-863 ◽  
Author(s):  
Marco Domenico Cirillo ◽  
Robin Mirdell ◽  
Folke Sjöberg ◽  
Tuan D Pham
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
State Of The Art ◽  
Normal Skin ◽  
Clinical Decision ◽  
Deep Convolutional Neural Networks ◽  
Average Accuracy ◽  
Different Types ◽  
Burn Depth ◽  
Fold Cross Validation

Abstract We present in this paper the application of deep convolutional neural networks (CNNs), which is a state-of-the-art artificial intelligence (AI) approach in machine learning, for automated time-independent prediction of burn depth. Color images of four types of burn depth injured in first few days, including normal skin and background, acquired by a TiVi camera were trained and tested with four pretrained deep CNNs: VGG-16, GoogleNet, ResNet-50, and ResNet-101. In the end, the best 10-fold cross-validation results obtained from ResNet-101 with an average, minimum, and maximum accuracy are 81.66, 72.06, and 88.06%, respectively; and the average accuracy, sensitivity, and specificity for the four different types of burn depth are 90.54, 74.35, and 94.25%, respectively. The accuracy was compared with the clinical diagnosis obtained after the wound had healed. Hence, application of AI is very promising for prediction of burn depth and, therefore, can be a useful tool to help in guiding clinical decision and initial treatment of burn wounds.

scholarly journals Handwritten Bangla Character Recognition Using the State-of-the-Art Deep Convolutional Neural Networks

2018 ◽  
Vol 2018 ◽  
pp. 1-13 ◽  
Author(s):  
Md Zahangir Alom ◽  
Paheding Sidike ◽  
Mahmudul Hasan ◽  
Tarek M. Taha ◽  
Vijayan K. Asari
Keyword(s):  
Neural Networks ◽  
Object Recognition ◽  
Convolutional Neural Networks ◽  
Character Recognition ◽  
State Of The Art ◽  
The State ◽  
Superior Performance ◽  
Deep Convolutional Neural Networks ◽  
Practical Applications ◽  
High Degree

In spite of advances in object recognition technology, handwritten Bangla character recognition (HBCR) remains largely unsolved due to the presence of many ambiguous handwritten characters and excessively cursive Bangla handwritings. Even many advanced existing methods do not lead to satisfactory performance in practice that related to HBCR. In this paper, a set of the state-of-the-art deep convolutional neural networks (DCNNs) is discussed and their performance on the application of HBCR is systematically evaluated. The main advantage of DCNN approaches is that they can extract discriminative features from raw data and represent them with a high degree of invariance to object distortions. The experimental results show the superior performance of DCNN models compared with the other popular object recognition approaches, which implies DCNN can be a good candidate for building an automatic HBCR system for practical applications.

scholarly journals DEEPCON: protein contact prediction using dilated convolutional neural networks with dropout

2019 ◽  
Vol 36 (2) ◽  
pp. 470-477 ◽  
Author(s):  
Badri Adhikari
Keyword(s):  
Neural Networks ◽  
Long Range ◽  
Convolutional Neural Networks ◽  
High Throughput Sequencing ◽  
State Of The Art ◽  
Deep Convolutional Neural Networks ◽  
Contact Prediction ◽  
Learning Techniques ◽  
Medium Range ◽  
Art Methods

Abstract Motivation Exciting new opportunities have arisen to solve the protein contact prediction problem from the progress in neural networks and the availability of a large number of homologous sequences through high-throughput sequencing. In this work, we study how deep convolutional neural networks (ConvNets) may be best designed and developed to solve this long-standing problem. Results With publicly available datasets, we designed and trained various ConvNet architectures. We tested several recent deep learning techniques including wide residual networks, dropouts and dilated convolutions. We studied the improvements in the precision of medium-range and long-range contacts, and compared the performance of our best architectures with the ones used in existing state-of-the-art methods. The proposed ConvNet architectures predict contacts with significantly more precision than the architectures used in several state-of-the-art methods. When trained using the DeepCov dataset consisting of 3456 proteins and tested on PSICOV dataset of 150 proteins, our architectures achieve up to 15% higher precision when L/2 long-range contacts are evaluated. Similarly, when trained using the DNCON2 dataset consisting of 1426 proteins and tested on 84 protein domains in the CASP12 dataset, our single network achieves 4.8% higher precision than the ensembled DNCON2 method when top L long-range contacts are evaluated. Availability and implementation DEEPCON is available at https://github.com/badriadhikari/DEEPCON/.

scholarly journals Bucket of Deep Transfer Learning Features and Classification Models for Melanoma Detection

2020 ◽  
Vol 6 (12) ◽  
pp. 129
Author(s):  
Mario Manzo ◽  
Simone Pellino
Keyword(s):  
Neural Networks ◽  
Skin Lesion ◽  
Transfer Learning ◽  
Convolutional Neural Networks ◽  
Image Features ◽  
Ensemble Classification ◽  
Deep Convolutional Neural Networks ◽  
Melanoma Detection ◽  
Statistical Measures ◽  
Different Types

Malignant melanoma is the deadliest form of skin cancer and, in recent years, is rapidly growing in terms of the incidence worldwide rate. The most effective approach to targeted treatment is early diagnosis. Deep learning algorithms, specifically convolutional neural networks, represent a methodology for the image analysis and representation. They optimize the features design task, essential for an automatic approach on different types of images, including medical. In this paper, we adopted pretrained deep convolutional neural networks architectures for the image representation with purpose to predict skin lesion melanoma. Firstly, we applied a transfer learning approach to extract image features. Secondly, we adopted the transferred learning features inside an ensemble classification context. Specifically, the framework trains individual classifiers on balanced subspaces and combines the provided predictions through statistical measures. Experimental phase on datasets of skin lesion images is performed and results obtained show the effectiveness of the proposed approach with respect to state-of-the-art competitors.

Early and Late Level Fusion of Deep Convolutional Neural Networks for Visual Concept Recognition

2016 ◽  
Vol 10 (03) ◽  
pp. 379-397 ◽  
Author(s):  
Hilal Ergun ◽  
Yusuf Caglar Akyuz ◽  
Mustafa Sert ◽  
Jianquan Liu
Keyword(s):  
Neural Networks ◽  
Best Practices ◽  
Convolutional Neural Networks ◽  
Network Architecture ◽  
Data Augmentation ◽  
State Of The Art ◽  
Great Promise ◽  
Visual Concept ◽  
Deep Convolutional Neural Networks ◽  
Concept Recognition

Visual concept recognition is an active research field in the last decade. Related to this attention, deep learning architectures are showing great promise in various computer vision domains including image classification, object detection, event detection and action recognition in videos. In this study, we investigate various aspects of convolutional neural networks for visual concept recognition. We analyze recent studies and different network architectures both in terms of running time and accuracy. In our proposed visual concept recognition system, we first discuss various important properties of popular convolutional network architecture under consideration. Then we describe our method for feature extraction at different levels of abstraction. We present extensive empirical information along with best practices for big data practitioners. Using these best practices we propose efficient fusion mechanisms both for single and multiple network models. We present state-of-the-art results on benchmark datasets while keeping computational costs at low level. Our results show that these state-of-the-art results can be reached without using extensive data augmentation techniques.

scholarly journals Deep Convolutional Neural Networks Based Analysis of Cephalometric Radiographs for Differential Diagnosis of Orthognathic Surgery Indications

2020 ◽  
Vol 10 (6) ◽  
pp. 2124 ◽  
Author(s):  
Ki-Sun Lee ◽  
Jae-Jun Ryu ◽  
Hyon Seok Jang ◽  
Dong-Yul Lee ◽  
Seok-Ki Jung
Keyword(s):  
Neural Networks ◽  
Differential Diagnosis ◽  
Convolutional Neural Networks ◽  
Orthognathic Surgery ◽  
Cross Validation ◽  
Deep Convolutional Neural Networks ◽  
Cephalometric Radiograph ◽  
Mandibular Teeth ◽  
Fold Cross Validation ◽  
Activation Mapping

The aim of this study was to evaluate the deep convolutional neural networks (DCNNs) based on analysis of cephalometric radiographs for the differential diagnosis of the indications of orthognathic surgery. Among the DCNNs, Modified-Alexnet, MobileNet, and Resnet50 were used, and the accuracy of the models was evaluated by performing 4-fold cross validation. Additionally, gradient-weighted class activation mapping (Grad-CAM) was used to perform visualized interpretation to determine which region affected the DCNNs’ class classification. The prediction accuracy of the models was 96.4% for Modified-Alexnet, 95.4% for MobileNet, and 95.6% for Resnet50. According to the Grad-CAM analysis, the most influential regions for the DCNNs’ class classification were the maxillary and mandibular teeth, mandible, and mandibular symphysis. This study suggests that DCNNs-based analysis of cephalometric radiograph images can be successfully applied for differential diagnosis of the indications of orthognathic surgery.

scholarly journals Instance Segmentation Based on Deep Convolutional Neural Networks and Transfer Learning for Unconstrained Psoriasis Skin Images

2021 ◽  
Vol 11 (7) ◽  
pp. 3155
Author(s):  
Guo-Shiang Lin ◽  
Kuan-Ting Lai ◽  
Jian-Ming Syu ◽  
Jen-Yung Lin ◽  
Sin-Kuo Chai
Keyword(s):  
Neural Networks ◽  
Transfer Learning ◽  
Convolutional Neural Networks ◽  
Cross Validation ◽  
Normal Skin ◽  
Object Localization ◽  
Feature Maps ◽  
Deep Convolutional Neural Networks ◽  
Subjective Testing ◽  
Instance Segmentation

In this paper, an efficient instance segmentation scheme based on deep convolutional neural networks is proposed to deal with unconstrained psoriasis images for computer-aided diagnosis. To achieve instance segmentation, the You Only Look At CoefficienTs (YOLACT) network composed of backbone, feature pyramid network (FPN), Protonet, and prediction head is used to deal with psoriasis images. The backbone network is used to extract feature maps from an image, and FPN is designed to generate multiscale feature maps for effectively classifying and localizing objects with multiple sizes. The prediction head is used to predict the classification information, bounding box information, and mask coefficients of objects. Some prototypes generated by Protonet are combined with mask coefficients to estimate the pixel-level shapes for objects. To achieve instance segmentation for unconstrained psoriasis images, YOLACT++ with a pretrained model is retrained via transfer learning. To evaluate the performance of the proposed scheme, unconstrained psoriasis images with different severity levels are collected for testing. As for subjective testing, the psoriasis regions and normal skin areas can be located and classified well. The four performance indices of the proposed scheme were higher than 93% after cross validation. About object localization, the Mean Average Precision (mAP) rates of the proposed scheme were at least 85.9% after cross validation. As for efficiency, the frames per second (FPS) rate of the proposed scheme reached up to 15. In addition, the F1_score and the execution speed of the proposed scheme were higher than those of the Mask Region-Based Convolutional Neural Networks (R-CNN)-based method. These results show that the proposed scheme based on YOLACT++ can not only detect psoriasis regions but also distinguish psoriasis pixels from background and normal skin pixels well. Furthermore, the proposed instance segmentation scheme outperforms the Mask R-CNN-based method for unconstrained psoriasis images.

scholarly journals Automatic Detection and Classification of Focal Liver Lesions Based on Deep Convolutional Neural Networks: A Preliminary Study

2021 ◽  
Vol 10 ◽  
Author(s):  
Jiarong Zhou ◽  
Wenzhe Wang ◽  
Biwen Lei ◽  
Wenhao Ge ◽  
Yu Huang ◽  
...  
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
Automatic Detection ◽  
Classification Performance ◽  
Focal Liver Lesions ◽  
Liver Lesions ◽  
Deep Convolutional Neural Networks ◽  
Average Accuracy ◽  
Preliminary Study

With the increasing daily workload of physicians, computer-aided diagnosis (CAD) systems based on deep learning play an increasingly important role in pattern recognition of diagnostic medical images. In this paper, we propose a framework based on hierarchical convolutional neural networks (CNNs) for automatic detection and classification of focal liver lesions (FLLs) in multi-phasic computed tomography (CT). A total of 616 nodules, composed of three types of malignant lesions (hepatocellular carcinoma, intrahepatic cholangiocarcinoma, and metastasis) and benign lesions (hemangioma, focal nodular hyperplasia, and cyst), were randomly divided into training and test sets at an approximate ratio of 3:1. To evaluate the performance of our model, other commonly adopted CNN models and two physicians were included for comparison. Our model achieved the best results to detect FLLs, with an average test precision of 82.8%, recall of 93.4%, and F1-score of 87.8%. Our model initially classified FLLs into malignant and benign and then classified them into more detailed classes. For the binary and six-class classification, our model achieved average accuracy results of 82.5 and73.4%, respectively, which were better than the other three classification neural networks. Interestingly, the classification performance of the model was placed between a junior physician and a senior physician. Overall, this preliminary study demonstrates that our proposed multi-modality and multi-scale CNN structure can locate and classify FLLs accurately in a limited dataset, and would help inexperienced physicians to reach a diagnosis in clinical practice.

scholarly journals Direct Quantization for Training Highly Accurate Low Bit-width Deep Neural Networks

2020 ◽  
Author(s):  
Tuan Hoang ◽  
Thanh-Toan Do ◽  
Tam V. Nguyen ◽  
Ngai-Man Cheung
Keyword(s):  
Neural Networks ◽  
Cost Function ◽  
Image Classification ◽  
Convolutional Neural Networks ◽  
Gradient Descent ◽  
Deep Neural Networks ◽  
State Of The Art ◽  
Deep Convolutional Neural Networks ◽  
Novel Method ◽  
The Cost

This paper proposes two novel techniques to train deep convolutional neural networks with low bit-width weights and activations. First, to obtain low bit-width weights, most existing methods obtain the quantized weights by performing quantization on the full-precision network weights. However, this approach would result in some mismatch: the gradient descent updates full-precision weights, but it does not update the quantized weights. To address this issue, we propose a novel method that enables direct updating of quantized weights with learnable quantization levels to minimize the cost function using gradient descent. Second, to obtain low bit-width activations, existing works consider all channels equally. However, the activation quantizers could be biased toward a few channels with high-variance. To address this issue, we propose a method to take into account the quantization errors of individual channels. With this approach, we can learn activation quantizers that minimize the quantization errors in the majority of channels. Experimental results demonstrate that our proposed method achieves state-of-the-art performance on the image classification task, using AlexNet, ResNet and MobileNetV2 architectures on CIFAR-100 and ImageNet datasets.

scholarly journals An automatic nuclei segmentation method based on deep convolutional neural networks for histopathology images

2019 ◽  
Vol 1 (1) ◽  
Author(s):  
Hwejin Jung ◽  
Bilal Lodhi ◽  
Jaewoo Kang
Keyword(s):  
Neural Networks ◽  
Convolutional Neural Networks ◽  
State Of The Art ◽  
Gaussian Mixture ◽  
Color Variation ◽  
Post Processing ◽  
Segmentation Method ◽  
Deep Convolutional Neural Networks ◽  
Nuclei Segmentation ◽  
Histopathology Images

Abstract Background Since nuclei segmentation in histopathology images can provide key information for identifying the presence or stage of a disease, the images need to be assessed carefully. However, color variation in histopathology images, and various structures of nuclei are two major obstacles in accurately segmenting and analyzing histopathology images. Several machine learning methods heavily rely on hand-crafted features which have limitations due to manual thresholding. Results To obtain robust results, deep learning based methods have been proposed. Deep convolutional neural networks (DCNN) used for automatically extracting features from raw image data have been proven to achieve great performance. Inspired by such achievements, we propose a nuclei segmentation method based on DCNNs. To normalize the color of histopathology images, we use a deep convolutional Gaussian mixture color normalization model which is able to cluster pixels while considering the structures of nuclei. To segment nuclei, we use Mask R-CNN which achieves state-of-the-art object segmentation performance in the field of computer vision. In addition, we perform multiple inference as a post-processing step to boost segmentation performance. We evaluate our segmentation method on two different datasets. The first dataset consists of histopathology images of various organ while the other consists histopathology images of the same organ. Performance of our segmentation method is measured in various experimental setups at the object-level and the pixel-level. In addition, we compare the performance of our method with that of existing state-of-the-art methods. The experimental results show that our nuclei segmentation method outperforms the existing methods. Conclusions We propose a nuclei segmentation method based on DCNNs for histopathology images. The proposed method which uses Mask R-CNN with color normalization and multiple inference post-processing provides robust nuclei segmentation results. Our method also can facilitate downstream nuclei morphological analyses as it provides high-quality features extracted from histopathology images.

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