scholarly journals Structural properties and gene-silencing activity of chemically modified DNA–RNA hybrids with parallel orientation

2018 ◽  
Vol 46 (4) ◽  
pp. 1614-1623 ◽  
Author(s):  
Maryam Habibian ◽  
Maryam Yahyaee-Anzahaee ◽  
Matije Lucic ◽  
Elena Moroz ◽  
Nerea Martín-Pintado ◽  
...  
Biomedicines ◽  
2021 ◽  
Vol 9 (6) ◽  
pp. 628
Author(s):  
Dagmara Baraniak ◽  
Jerzy Boryski

This review covers studies which exploit triazole-modified nucleic acids in the range of chemistry and biology to medicine. The 1,2,3-triazole unit, which is obtained via click chemistry approach, shows valuable and unique properties. For example, it does not occur in nature, constitutes an additional pharmacophore with attractive properties being resistant to hydrolysis and other reactions at physiological pH, exhibits biological activity (i.e., antibacterial, antitumor, and antiviral), and can be considered as a rigid mimetic of amide linkage. Herein, it is presented a whole area of useful artificial compounds, from the clickable monomers and dimers to modified oligonucleotides, in the field of nucleic acids sciences. Such modifications of internucleotide linkages are designed to increase the hybridization binding affinity toward native DNA or RNA, to enhance resistance to nucleases, and to improve ability to penetrate cell membranes. The insertion of an artificial backbone is used for understanding effects of chemically modified oligonucleotides, and their potential usefulness in therapeutic applications. We describe the state-of-the-art knowledge on their implications for synthetic genes and other large modified DNA and RNA constructs including non-coding RNAs.


2013 ◽  
Vol 2013 ◽  
pp. 1-10 ◽  
Author(s):  
Abdullah G. Al-Sehemi ◽  
Tarek M. El-Gogary ◽  
Karl Peter Wolschann ◽  
Gottfried Koehler

We studied for the first time 16 tautomers/rotamers of diphosphocytosine by four computational methods. Some of these tautomers/rotamers are isoenergetic although they have different structures. High-level electron correlation MP2 and MP4(SDQ) ab initio methods and density functional methods employing a B3LYP and the new M06-2X functional were used to study the structure and relative stability of 16 tautomers/rotamers of diphosphocytosine. The dienol tautomers of diphosphocytosine are shown to be much more stable than the keto-enol and diketo forms. The tautomers/rotamers stability could be ranked as PC3 = PC12 < PC2 = PC11 < PC1 < PC10 < PC8 < PC9 < PC15 < PC16 < PC6 ~ PC7 < PC13 < PC4 ~ PC14 < PC5. This stability order was discussed in the light of stereo and electronic factors. Solvation effect has been modeled in a high dielectric solvent, water using the polarized continuum model (PCM). Consideration of the solvent causes some reordering of the relative stability of diphosphocytosine tautomers: PC3 ~ PC12 ~ PC2 ~ PC11 < PC1 < PC10 < PC8 < PC9 < PC15 ~ PC16 < PC13 < PC6 ~ PC7 ~ PC14 < PC4 ~ PC5.


2018 ◽  
Vol 1 (7) ◽  
pp. 3741-3746 ◽  
Author(s):  
María Sanromán-Iglesias ◽  
Charles H. Lawrie ◽  
Luis M. Liz-Marzán ◽  
Marek Grzelczak

2013 ◽  
Vol 53 (6-7) ◽  
pp. 317-317
Author(s):  
Joseph Larkin ◽  
Spencer Carson ◽  
Daniel H. Stoloff ◽  
Meni Wanunu

2011 ◽  
Vol 50 (10) ◽  
pp. 2284-2288 ◽  
Author(s):  
Muthiah Manoharan ◽  
Akin Akinc ◽  
Rajendra K. Pandey ◽  
June Qin ◽  
Philipp Hadwiger ◽  
...  

2011 ◽  
Vol 123 (10) ◽  
pp. 2332-2336 ◽  
Author(s):  
Muthiah Manoharan ◽  
Akin Akinc ◽  
Rajendra K. Pandey ◽  
June Qin ◽  
Philipp Hadwiger ◽  
...  

2015 ◽  
Vol 6 (2) ◽  
pp. 1206-1211 ◽  
Author(s):  
Tongbo Wu ◽  
Xianjin Xiao ◽  
Zhe Zhang ◽  
Meiping Zhao

We present a novel strategy for the highly selective detection of single-nucleotide variation at room temperature, based on an extremely specific interaction between Lambda exonuclease (λ exo) and a chemically modified DNA structure.


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