The Effects of Increased Viscosity on the Function of Integral Membrane Proteins

Author(s):  
Suzanne F. Scarlata

For many years the idea that the activity of integral membrane proteins is regulated by the fluidity of the lipid matrix was popular and appeared to be quite rational. However, as information about the effect of viscosity on the function of different membrane proteins became available, the correlation between the two became increasingly unclear. The purpose of this article is to readdress this issue in light of our recent pressure and temperature studies. This chapter is divided into seven parts: (1) the effect of viscosity on enzyme activity; (2) the effect of viscosity on the local motions of proteins; (3) characterization of membrane viscosity; (4) demonstration of changes in protein-lipid contacts brought about by changes in viscosity; (5) an example of a protein in which the viscosity appears to stabilize a particular conformational state: (6) relations between membrane viscosity and protein function; and (7) conclusions. The effect of viscosity (η) on the rate (k) of a chemical reaction was first given by Kramers (1940): . . . k=A/ηe−Ea/RT (1) . . . In this expression, viscosity will affect the rate of a reaction by limiting the rate of diffusion of reactants. Viscosity will thus modify the frequency factor (A) and should not affect the activation energy. This expression has been applied to aqueous soluble enzymes (for example, Gavish, 1979; Gavish & Werber, 1979; Somogyi et al., 1984), and it appears that, in general, enzymes obey Kramers’s relation, although in some cases the exponent of η is less than one. Viscosity can affect enzymatic rates not only by limiting the diffusion of substrates but also by damping internal motions of the protein chains. It seems reasonable that a high enough viscosities, the protein would be damped sufficiently so that large activation energies will be required for the backbone motions that allow substrates and products to diffuse into and out of the active site. This viscosity-induced increase in activation energy was shown by studies of the reassociation of carbon monoxide and dioxygen to the heme site of myoglobin after flash photodissociation (Austin et al., 1975; Beece et al., 1980).

1995 ◽  
Vol 28 (6) ◽  
pp. 1089-1101 ◽  
Author(s):  
Kaori Inoue ◽  
Yuka Takeuchi ◽  
Mikio Nishimura ◽  
Ikuko Hara-Nishimura

1994 ◽  
Vol 67 (1) ◽  
pp. 103-113 ◽  
Author(s):  
Fiona M. Symons ◽  
Peter J. Murray ◽  
Hong Ji ◽  
Richard J. Simpson ◽  
Amelia H. Osborn ◽  
...  

2011 ◽  
pp. 317-360 ◽  
Author(s):  
Víctor Lórenz-Fonfría ◽  
Alex Perálvarez-Marín ◽  
Esteve Padrós ◽  
Tzvetana Lazarova

PLoS Genetics ◽  
2020 ◽  
Vol 16 (12) ◽  
pp. e1009255
Author(s):  
Zhanna Lipatova ◽  
Valeriya Gyurkovska ◽  
Sarah F. Zhao ◽  
Nava Segev

Thirty percent of all cellular proteins are inserted into the endoplasmic reticulum (ER), which spans throughout the cytoplasm. Two well-established stress-induced pathways ensure quality control (QC) at the ER: ER-phagy and ER-associated degradation (ERAD), which shuttle cargo for degradation to the lysosome and proteasome, respectively. In contrast, not much is known about constitutive ER-phagy. We have previously reported that excess of integral-membrane proteins is delivered from the ER to the lysosome via autophagy during normal growth of yeast cells. Whereas endogenously expressed ER resident proteins serve as cargos at a basal level, this level can be induced by overexpression of membrane proteins that are not ER residents. Here, we characterize this pathway as constitutive ER-phagy. Constitutive and stress-induced ER-phagy share the basic macro-autophagy machinery including the conserved Atgs and Ypt1 GTPase. However, induction of stress-induced autophagy is not needed for constitutive ER-phagy to occur. Moreover, the selective receptors needed for starvation-induced ER-phagy, Atg39 and Atg40, are not required for constitutive ER-phagy and neither these receptors nor their cargos are delivered through it to the vacuole. As for ERAD, while constitutive ER-phagy recognizes cargo different from that recognized by ERAD, these two ER-QC pathways can partially substitute for each other. Because accumulation of membrane proteins is associated with disease, and constitutive ER-phagy players are conserved from yeast to mammalian cells, this process could be critical for human health.


1996 ◽  
Vol 318 (2) ◽  
pp. 673-679 ◽  
Author(s):  
Matthew G GOODWIN ◽  
Christopher ANTHONY

The quinoprotein methanol dehydrogenase (MDH) contains a Ca2+ ion at the active site. Ca2+-free enzyme (from a processing mutant) was used to obtain enzyme containing Sr2+ or Ba2+, the Ba2+-MDH being the first enzyme to be described in which a Ba2+ ion functions at the active site. The activation energy for oxidation of methanol by Ba2+-MDH is less than half that of the reaction catalysed by Ca2+-MDH (a difference of 21.4 kJ/mol), and the Vmax value is 2-fold higher. The affinities of Ba2+-MDH for substrate and activator are very much less than those of Ca2+-MDH; the Km for methanol is 3.5 mM (compared with 3 µM) and the KA for ammonia is 52 mM (compared with 2 mM). The different activity of Ba2+-MDH is probably due to a change in the conformation of the active site, leading to a decrease in the free energy of substrate binding and hence a decrease in activation energy. The kinetic model for Ba2+-MDH with respect to substrate and activator is consistent with previous models for Ca2+-MDH. The pronounced deuterium isotope effect (6.0–7.6) is influenced by ammonia, and is consistent with activation of the pyrroloquinoline quinone reduction step by ammonia. Because of its low affinity for substrates, it is possible to prepare the oxidized form of Ba2+-MDH. No spectral intermediates could be detected during reduction by added substrate, and so it is not possible to distinguish between those mechanisms involving covalent substrate addition and those involving only hydride transfer.


1994 ◽  
Vol 343 (1306) ◽  
pp. 443-445 ◽  

Prions cause spongiform degeneration in various mammalian species. The scrapie prion protein (PrP Sc ) is part of the infectious particle and may mediate infection and spreading of the disease in the brain. It was therefore of interest to purify and analyse PrP ligands (Plis). Plis were identified on ligand blots using either intact PrP or peptides corresponding to the central portion of PrP. Here, characterization of a 110 and a 125 kDa Pli is reported. Both Plis were found in total membrane fractions and could be extracted with carbonate indicating that they are not integral membrane proteins. On sucrose gradients both PrP ligands sedimented with high density particles.


Langmuir ◽  
2009 ◽  
Vol 25 (21) ◽  
pp. 12623-12634 ◽  
Author(s):  
C. Tribet ◽  
C. Diab ◽  
T. Dahmane ◽  
M. Zoonens ◽  
J.-L. Popot ◽  
...  

Gene ◽  
1998 ◽  
Vol 213 (1-2) ◽  
pp. 133-140 ◽  
Author(s):  
Amina Elbehti-Green ◽  
Harry C Au ◽  
James T Mascarello ◽  
Deena Ream-Robinson ◽  
Immo E Scheffler

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