scholarly journals Metabotyping: A New Approach to Investigate Rapeseed (Brassica napus L.) Genetic Diversity in the Metabolic Response to Clubroot Infection

2012 ◽  
Vol 25 (11) ◽  
pp. 1478-1491 ◽  
Author(s):  
Geoffrey Wagner ◽  
Sophie Charton ◽  
Christine Lariagon ◽  
Anne Laperche ◽  
Raphaël Lugan ◽  
...  
Keyword(s):  
Amino Acids ◽  
Brassica Napus ◽  
Root System ◽  
Metabolic Response ◽  
Plasmodiophora Brassicae ◽  
Late Response ◽  
Primary Metabolism ◽  
Brassica Napus L ◽  
Clubroot Disease ◽  
Metabolic Sink

Clubroot disease affects all Brassicaceae spp. and is caused by the obligate biotroph pathogen Plasmodiophora brassicae. The development of galls on the root system is associated with the establishment of a new carbon metabolic sink. Here, we aimed to deepen our knowledge of the involvement of primary metabolism in the Brassica napus response to clubroot infection. We studied the dynamics and the diversity of the metabolic responses to the infection. Root system metabotyping was carried out for 18 rapeseed genotypes displaying different degrees of symptom severity, under inoculated and noninoculated conditions at 42 days postinoculation (dpi). Clubroot susceptibility was positively correlated with clubroot-induced accumulation of several amino acids. Although glucose and fructose accumulated in some genotypes with minor symptoms, their levels were negatively correlated to the disease index across the whole set of genotypes. The dynamics of the metabolic response were studied for the susceptible genotype ‘Yudal,’ which allowed an “early” metabolic response (established from 14 to 28 dpi) to be differentiated from a “late” response (from 35 dpi). We discuss the early accumulation of amino acids in the context of the establishment of a nitrogen metabolic sink and the hypothetical biological role of the accumulation of glutathione and S-methylcysteine.

Genetic structure of Plasmodiophora brassicae populations virulent on clubroot resistant canola (Brassica napus)

Plant Disease ◽  
2021 ◽  
Author(s):  
Homa Askarian ◽  
Alireza Akhavan ◽  
Leonardo Galindo González ◽  
Sheau-Fang Hwang ◽  
Stephen Ernest Strelkov
Keyword(s):  
Brassica Napus ◽  
Genetic Structure ◽  
Plasmodiophora Brassicae ◽  
Single Spore ◽  
Specific Primers ◽  
Brassica Napus L ◽  
Before And After ◽  
Differential Hosts ◽  
And Migration ◽  
Simple Sequence

Clubroot, caused by Plasmodiophora brassicae Woronin, is a significant threat to the canola (Brassica napus L.) industry in Canada. Clubroot resistance has been overcome in more than 200 fields since 2013, representing one of the biggest challenges to sustainable canola production. The genetic structure of 36 single-spore isolates derived from 12 field isolates of P. brassicae collected before and after the introduction of clubroot resistant (CR) canola cultivars (2005-2014) was evaluated by simple sequence repeat (SSR) marker analysis. Polymorphisms were detected in 32 loci with the identification of 93 distinct alleles. A low level of genetic diversity was found among the single-spore isolates. Haploid linkage disequilibrium and number of migrants suggested that recombination and migration were rare or almost absent in the tested P. brassicae population. A relatively clear relationship was found between the genetic structure and virulence phenotypes of the pathogen as defined on the differential hosts of Somé et al., Williams and the Canadian Clubroot Differential (CCD) set. Although genetic variability within each pathotype group, as classified on each differential system, was low, significant genetic differentiation was observed among the pathotypes. The highest correlation between genetic structure and virulence was found among matrices produced with genetic data and the hosts of the CCD set, with a threshold index of disease of 50% to distinguish susceptible from resistant reactions. Genetically homogeneous single-spore isolates provided a more complete and clearer picture of the population genetic structure of P. brassicae, and the results suggest some promise for the development of pathotype-specific primers.

scholarly journals Virulence Spectrum of Single-Spore and Field Isolates of Plasmodiophora brassicae Able to Overcome Resistance in Canola (Brassica napus)

Plant Disease ◽  
2021 ◽  
Vol 105 (1) ◽  
pp. 43-52 ◽  
Author(s):  
Homa Askarian ◽  
Alireza Akhavan ◽  
Victor P. Manolii ◽  
Tiesen Cao ◽  
Sheau-Fang Hwang ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Confidence Interval ◽  
Plasmodiophora Brassicae ◽  
Large Collection ◽  
Single Spore ◽  
Brassica Napus L ◽  
Clubroot Resistance ◽  
Field Isolates ◽  
Virulence Spectrum ◽  
Important Disease

Clubroot, caused by Plasmodiophora brassicae Woronin, is an important disease of canola (Brassica napus L.) that is managed mainly by planting clubroot-resistant (CR) cultivars. Field isolates of P. brassicae can be heterogeneous mixtures of various pathotypes, making assessments of the genetics of host–pathogen interactions challenging. Thirty-four single-spore isolates were obtained from nine field isolates of the pathogen collected from CR canola cultivars. The virulence patterns of the single-spore and field isolates were assessed on the 13 host genotypes of the Canadian Clubroot Differential (CCD) set, which includes the differentials of Williams and Somé et al. Indices of disease (IDs) severity of 25, 33, and 50% (±95% confidence interval) were compared as potential thresholds to distinguish between resistant and susceptible reactions, with an ID of 50% giving the most consistent responses for pathotype classification purposes. With this threshold, 13 pathotypes could be distinguished based on the CCD system, 7 on the differentials of Williams, and 3 on the hosts of Somé et al. The highest correlations were observed among virulence matrices generated using the three threshold IDs on the CCD set. Genetically homogeneous single-spore isolates gave a clearer profile of the P. brassicae pathotype structure. Novel pathotypes, not reported in Canada previously, were identified among the isolates. This large collection of single-spore isolates can serve as a reference in screening and breeding for clubroot resistance.

Variation for virulence on Brassica napus L. amongst Plasmodiophora brassicae collections from France and derived single‐spore isolates

1996 ◽  
Vol 45 (3) ◽  
pp. 432-439 ◽  
Author(s):  
A. SOME ◽  
M. J. MANZANARES ◽  
F. LAURENS ◽  
F. BARON ◽  
G. THOMAS ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Plasmodiophora Brassicae ◽  
Single Spore ◽  
Brassica Napus L

Analysis of embryo, cytoplasmic and maternal genetic correlations for seven essential amino acids in rapeseed meal (Brassica napus L.)

2011 ◽  
Vol 90 (1) ◽  
pp. 67-74 ◽  
Author(s):  
GUO LIN CHEN ◽  
JIAN GUO WU ◽  
MURALI-TOTTEKKAAD VARIATH ◽  
ZHONG WEI YANG ◽  
CHUN HAI SHI
Keyword(s):  
Amino Acids ◽  
Brassica Napus ◽  
Genetic Correlations ◽  
Rapeseed Meal ◽  
Essential Amino Acids ◽  
Brassica Napus L

Species and varietal differences in the proteins of rapeseed

1969 ◽  
Vol 47 (5) ◽  
pp. 679-685 ◽  
Author(s):  
A. J. Finlayson ◽  
R. S. Bhatty ◽  
C. M. Christ
Keyword(s):  
Amino Acids ◽  
Amino Acid ◽  
Brassica Napus ◽  
Amino Acid Composition ◽  
Protein Content ◽  
Acid Composition ◽  
Brassica Campestris ◽  
Sulfur Deficiency ◽  
Brassica Napus L ◽  
Sulfur Containing

Two proteins, previously described by the authors as BI (S020, buffer 12 S) and AIVS (S020, w 1.7 S) have been isolated from eight varieties of rapeseed belonging to Brassica campestris L. and Brassica napus L. species. These proteins have similar chromatographic and electrophoretic characteristics but differ in amino acid composition, particularly with regard to the sulfur-containing amino acids. One of the rapeseed samples was obtained from plants grown on sulfur-deficient soil. The sulfur deficiency produced, in the mature seed, a much reduced protein content and appeared to affect the structure of the protein BI.

scholarly journals Suppression of Canola (Brassica napus) Resistance by Virulent Isolates of Plasmodiophora brassicae (Clubroot) During Primary Infection

Plant Disease ◽  
2020 ◽  
Vol 104 (2) ◽  
pp. 430-437
Author(s):  
Junye Jiang ◽  
Rudolph Fredua-Agyeman ◽  
Stephen E. Strelkov ◽  
Sheau-Fang Hwang
Keyword(s):  
Brassica Napus ◽  
Plasmodiophora Brassicae ◽  
Negative Control ◽  
Pcr Analysis ◽  
High Concentration ◽  
Clubroot Disease ◽  
Low Concentrations ◽  
High Concentrations ◽  
Experimental Treatments ◽  
Positive Controls

The planting of clubroot resistant (CR) canola (Brassica napus) is the most effective method to manage clubroot. Since 2013, many Plasmodiophora brassicae isolates capable of overcoming resistance have been detected, often in mixtures with avirulent isolates. To improve understanding of the effect of low concentrations of virulent isolates on host resistance, three CR canola cultivars (45H29, L135C, and L241C) were inoculated with pairs of isolates representing virulent/avirulent pathotypes (2*/2, 3*/3, and 5*/5) collected after or before the introduction of CR canola, respectively. Seven-day-old seedlings of each cultivar were incubated for 2 days in low concentrations (1 × 103 spores/ml) of the virulent isolates, followed by a second inoculation with a high concentration (1 × 107 spores/ml) of the avirulent isolates. Positive controls comprised seedlings inoculated with low concentrations of the virulent isolates followed by high concentrations of the virulent isolates (PC1) or only with high concentrations of virulent isolates (PC2). Negative controls comprised seedlings inoculated only with high concentrations of the avirulent isolates (NC1) or only with low concentrations of the virulent isolates (NC2). Clubroot severity was significantly higher in all nine experimental treatments (low virulent plus high avirulent) than in the negative control NC1 (high avirulent) but was lower in the experimental treatments than in the positive controls (PC1 and PC2). Low concentrations of virulent isolates alone (NC2) caused moderate clubroot. Disease severity correlated well with P. brassicae biomass in canola as determined by quantitative PCR analysis 28 to 35 days after inoculation. This study revealed that low concentrations of virulent isolates compromised canola resistance for infection by avirulent isolates.

Insights into the functional relationship between cytokinin-induced root system phenotypes and nitrate uptake in Brassica napus

2017 ◽  
Vol 44 (8) ◽  
pp. 832 ◽  
Author(s):  
Qianqian Guo ◽  
Jonathan Love ◽  
Jiancheng Song ◽  
Jessica Roche ◽  
Matthew H. Turnbull ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Root System ◽  
Culture Media ◽  
Root Traits ◽  
Spatial Arrangement ◽  
Shoot Biomass ◽  
N Availability ◽  
Root Proliferation ◽  
Brassica Napus L ◽  
15N Uptake

Root system architecture is the spatial arrangement of roots that impacts the capacity of plants to access nutrients and water. We employed pharmacologically generated morphological and molecular phenotypes and used in situ 15N isotope labelling, to investigate whether contrasting root traits are of functional interest in relation to nitrate acquisition. Brassica napus L. were grown in solidified phytogel culture media containing 1 mM KNO3 and treated with the cytokinin, 6-benzylaminopurine, the cytokinin antagonist, PI-55, or both in combination. The pharmacological treatments inhibited root elongation relative to the control. The contrasting root traits induced by PI-55 and 6-benzylaminopurine were strongly related to 15N uptake rate. Large root proliferation led to greater 15N cumulative uptake rather than greater 15N uptake efficiency per unit root length, due to a systemic response in the plant. This relationship was associated with changes in C and N resource distribution between the shoot and root, and in expression of BnNRT2.1, a nitrate transporter. The root : shoot biomass ratio was positively correlated with 15N cumulative uptake, suggesting the functional utility of root investment for nutrient acquisition. These results demonstrate that root proliferation in response to external nitrate is a behaviour which integrates local N availability and the systemic N status of the plant.

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