scholarly journals Phytophthora Genomics: The Plant Destroyers' Genome Decoded

2006 ◽  
Vol 19 (12) ◽  
pp. 1295-1301 ◽  
Author(s):  
Francine Govers ◽  
Mark Gijzen

The year 2004 was an exciting one for the Phytophthora research community. The United States Department of Energy Joint Genome Institute (JGI) completed the draft genome sequence of two Phytophthora species, Phytophthora sojae and Phytophthora ramorum. In August of that year over 50 people gathered at JGI in Walnut Creek, California, for an annotation jamboree and searched for the secrets and surprises that the two genomes have in petto. This culminated in a paper in Science in September of this year describing the highlights of the sequencing project and emphasizing the power of having the genome sequences of two closely related organisms. This MPMI Focus issue on Phytophthora genomics contains a number of more specialized manuscripts centered on gene annotation and genome organization, and complemented with manuscripts that rely on genomics resources.

Author(s):  
D. King ◽  
G. Rochau ◽  
D. Oscar ◽  
C. Morrow ◽  
P. Tsvetkov ◽  
...  

The United States Department of Energy, Nuclear Energy Research Initiative (NERI) Direct Energy Conversion Proof of Principle (DECPOP) project has as its goal the development of a direct energy conversion process suitable for commercial development. We define direct energy conversion as any fission process that returns usable energy without an intermediate thermal process. A prior Direct Energy Conversion (DEC) project [1] has been completed and indicates that a viable direct energy device is possible if several technological issues can be overcome. The DECPOP program is focusing on two of the issues: charged particle steering and high voltage hold-off. This paper reports on the progress of the DECPOP project. Two prototype concepts are under development: a Fission Electric Cell using magnetic insulation and a Fission Fragment Magnetic Collimator using magnetic fields to direct fission fragments to collectors. Included in this paper are a short project description, an abbreviated summary of the work completed to date, a description of ongoing and future project activities, and a discussion of the potential for future research and development.


Author(s):  
Alex Frank ◽  
Peter Therkelsen ◽  
Miguel Sierra Aznar ◽  
Vi H. Rapp ◽  
Robert K. Cheng ◽  
...  

About 75% of the electric power generated by centralized power plants feeds the energy needs from the residential and commercial sectors. These power plants waste about 67% of primary energy as heat emitting 2 billion tons of CO2 per year in the process (∼ 38% of total US CO2 generated per year) [1]. A study conducted by the United States Department of Energy indicated that developing small-scale combined heat and power systems to serve the commercial and residential sectors could have a significant impact on both energy savings and CO2 emissions. However, systems of this scale historically suffer from low efficiencies for a variety of reasons. From a combustion perspective, at these small scales, few systems can achieve the balance between low emissions and high efficiencies due in part to the increasing sensitivity of the system to hydrodynamic and heat transfer effects. Addressing the hydrodynamic impact, the effects of downscaling on the flowfield evolution were studied on the low swirl burner (LSB) to understand if it could be adapted to systems at smaller scales. Utilizing particle image velocimetry (PIV), three different swirlers were studied ranging from 12 mm to 25.4 mm representing an output range of less than 1 kW to over 23 kW. Results have shown that the small-scale burners tested exhibited similar flowfield characteristics to their larger-scale counterparts in the non-reacting cases studied. Utilizing this data, as a proof of concept, a 14 mm diameter LSB with an output of 3.33 kW was developed for use in microturbine operating on a recuperated Brayton cycle. Emissions results from this burner proved the feasibility of the system at sufficiently lean mixtures. Furthermore, integration of the newly developed LSB into a can style combustor for a microturbine application was successfully completed and comfortably meet the stringent emissions targets. While the analysis of the non-reacting cases was successful, the reacting cases were less conclusive and further investigation is required to gain an understanding of the flowfield evolution which is the subject of future work.


Plant Disease ◽  
2014 ◽  
Vol 98 (11) ◽  
pp. 1582-1582 ◽  
Author(s):  
S. Vitale ◽  
L. Luongo ◽  
M. Galli ◽  
A. Belisario

The genus Viburnum comprises over 150 species of shrubs and small trees such as Laurustinus (Viburnum tinus L.), which is one of the most widely used ornamental plants in private and public gardens. Furthermore, it commonly forms stands of natural woodland in the Mediterranean area. In autumn 2012, a survey was conducted to determine the presence of Phytophthora ramorum on Viburnum in commercial nurseries in the Latium region where wilting, dieback, and death of twigs were observed on 30% of the Laurustinus plants. A Phytophthora species was consistently recovered from soil rich in feeder roots from potted Laurustinus plants showing symptoms. Soil samples were baited with rhododendron leaves. Small pieces of leaf tissue cut from the margin of lesions were plated on P5ARPH selective medium (4). Pure cultures, obtained by single-hypha transfers on potato dextrose agar (PDA), were petaloid. Sporangia formation was induced on pepper seeds (3). Sporangia were almost spherical, ovoid or obpyriform, non-papillate and non-caducous, measuring 36.6 to 71.4 × 33.4 to 48.3 μm (average 53.3 × 37.4 μm) with a length/width ratio of 1.4. Chlamydospores were terminal and 25.2 to 37.9 μm in diameter. Isolates were considered heterothallic because they did not produce gametangia in culture or on the host. All isolates examined had 30 to 35°C as optimum temperatures. Based on these morphological characteristics, the isolates were identified as Phytophthora hydropathica (2). Morphological identification was confirmed by internal transcribed spacer (ITS), and mitochondrial partial cytochrome oxidase subunit 2 (CoxII) with BLAST analysis in the NCBI database revealing 99% identity with ITS and 100% identity with CoxII. The sequences of the three isolates AB234, AB235, and AB236 were deposited in European Nucleotide Archive (ENA) with the accession nos. HG934148, HG934149, and HG934150 for ITS and HG934151, HG934152, and HG934153 for CoxII, respectively. Pathogenicity tests were conducted in the greenhouse on a total of six 1-year-old shoots cut from V. tinus plants with two inoculation points each. Mycelial plugs cut from the margins of actively growing 8-day-old cultures on PDA were inserted through the epidermis into the phloem. Controls were treated as described above except that sterile PDA plugs replaced the inoculum. Shoots were incubated in test tubes with sterile water in the dark at 24 ± 2°C. After 2 weeks, lesions were evident at the inoculation points and symptoms were similar to those caused by natural infection. P. hydropathica was consistently re-isolated from the margin of lesions, while controls remained symptomless. In the United States in 2008, P. hydropathica was described as spreading from irrigation water to Rhododendron catawbiense and Kalmia latifolia (2). This pathogen can also attack several other horticultural crops (1), but to our knowledge, this is the first report of P. hydropathica causing wilting and shoot dieback on V. tinus. References: (1) C. X. Hong et al. Plant Dis. 92:1201, 2008. (2) C. X. Hong et al. Plant Pathol. 59:913, 2010. (3) E. Ilieva et al. Eur. J. Plant Path. 101:623, 1995. (4) S. N. Jeffers and S. B. Martin. Plant Dis. 70:1038, 1986.


2020 ◽  
Vol 33 (6) ◽  
pp. 794-797
Author(s):  
Subodh K. Srivastava ◽  
Z. Gloria Abad ◽  
Leandra M. Knight ◽  
Kurt Zeller ◽  
Vessela Mavrodieva ◽  
...  

Phytophthora ramorum, P. kernoviae, and P. melonis are each species of current regulatory concern in the United States, the United Kingdom, and other areas of the world. Ex-type material are cultures and duplicates of the type that was used to describe each species and that are deposited in additional culture collections. Using these type specimens as references is essential to designing correct molecular identification and diagnostic systems. Here, we report a whole genome sequence for the Ex-type material of P. ramorum, P. kernoviae, and P. melonis generated using high-throughput sequencing via the MinION third generation platform from Oxford Nanopore Technology. We assembled the quality filtered reads into contigs for each species. We assembled the continuous contigs of P. ramorum, P. kernoviae, and P. melonis (1,322, 545, and 2,091 contigs, respectively). The ab initio prediction of genes from these species reveals that there are 16,838, 12,793, and 34,580 genes in P. ramorum, P. kernoviae, and P. melonis, respectively. Of the 34,580 P. melonis genes, 10,164 genes were conserved among all three of these Phytophthora species which may include pathogenicity genes. We compared the ex-type of P. ramorum EU1 lineage assembly with another selected isolate of EU1 available at the National Center for Biotechnology Information and found 251,859 single nucleotide polymorphisms (SNPs) genome-wide; the comparison with the EU2 lineage genome isolate revealed 441,859 SNPs genome-wide. This genome resource of the ex-types of P. ramorum, and P. kernoviae is a significant contribution as these species are among the most important pathogens of regulatory concern in different regions of the world.


1997 ◽  
Vol 492 ◽  
Author(s):  
W. D. Wilson ◽  
C. M. Schaldach

ABSTRACTWe present a method for the calculation of the binding and rotational energies of neutral (H2S) and charged (HS-) molecules impinging upon a charged (Cu <100>) surface in the presence of an electrolyte. A molecular surface is constructed surrounding the H2S and HS- molecules forming boundary elements. A coupled Schrödinger-Poisson-Boltzmann iterative procedure treats the electronic structure of the molecules at the 6–31G**/MP2 level of theory and includes solvation effects through the single and double layers of charge induced by the electronic distribution. The molecule, together with its charged layers, forms a Molecular Single and Double Layer (MSDL), an object which then interacts with a Gouy-Chapman plane within the electrolyte. The additional induced charge at the molecular surface resulting from this electric field is obtained by solving a second set of boundary element equations. Repulsive interactions between the atoms of the molecule and those of the surface are obtained using a rigid-ion Hartree-Fock method. Binding energies of the molecule to the surface are determined as a function of the real surface charge imposed and also the ionic strength of the solution. It is found that surface charges can completely (180°) reorient these molecules and that the counterions in the solution can completely screen binding effects of even large surface charges.Work supported by the United States Department of Energy under contract #DE-AC04–94AL85000.


1995 ◽  
Vol 117 (3) ◽  
pp. 424-431
Author(s):  
A. Saith ◽  
P. F. Norton ◽  
V. M. Parthasarathy

The Ceramic Stationary Gas Turbine (CSGT) Program has utilized the SPSLIFE computer code to evaluate the preliminary design of ceramic components. The CSGT program is being performed under the sponsorship of the United States Department of Energy, Office of Industrial Technology, to improve the performance of stationary gas turbines in cogeneration through the selective replacement of hot section components with ceramic parts. Preliminary design evaluation and life assessment results are presented here for the following components: (1) Stage 1 turbine blade, (2) Stage 1 turbine nozzle, and (3) combustor inner liner. From the results of the analysis, recommendations are made for improving the life and reliability of the components. All designs were developed in Phase I (preliminary design) of the CSGT program and will be optimized in Phase II (detail design) of the program.


Author(s):  
R. A. Rackley ◽  
J. R. Kidwell

The Garrett/Ford Advanced Gas Turbine Powertrain System Development Project, authorized under NASA Contract DEN3-167, is sponsored by and is part of the United States Department of Energy Gas Turbine Highway Vehicle System Program. Program effort is oriented at providing the United States automotive industry the technology base necessary to produce gas turbine powertrains competitive for automotive applications having: (1) reduced fuel consumption, (2) multi-fuel capability, and (3) low emissions. The AGT101 powertrain is a 74.6 kW (100 hp), regenerated single-shaft gas turbine engine operating at a maximum turbine inlet temperature of 1644 K (2500 °F), coupled to a split differential gearbox and Ford automatic overdrive production transmission. The gas turbine engine has a single-stage centrifugal compressor and a single-stage radial inflow turbine mounted on a common shaft. Maximum rotor speed is 10,472 rad/sec (100,000 rpm). All high-temperature components, including the turbine rotor, are ceramic. AGT101 powertrain development has been initiated, with testing completed on many aerothermodynamic components in dedicated test rigs and start of Mod I, Build 1 engine testing.


Author(s):  
Arun Saith ◽  
Paul F. Norton ◽  
Vijay M. Parthasarathy

The Ceramic Stationary Gas Turbine (CSGT) Program has utilized the SPSLIFE computer code to evaluate the preliminary design of ceramic components. The CSGT program is being performed under the sponsorship of the United States Department of Energy, Office of Industrial Technology, to improve the performance of stationary gas turbines in cogeneration through the selective replacement of hot section components with ceramic parts. Preliminary design evaluation and life assessment results are presented here for the following components: (1) Stage 1 Turbine Blade, (2) Stage 1 Turbine Nozzle, and (3) Combustor Inner Liner. From the results of the analysis, recommendations are made for improving the life and reliability of the components. All designs were developed in Phase I (preliminary design) of the CSGT program and will be optimized in Phase II (detail design) of the program.


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