scholarly journals Genetic Differentiation of Puccinia triticina Populations in Central Asia and the Caucasus

2007 ◽  
Vol 97 (9) ◽  
pp. 1141-1149 ◽  
Author(s):  
J. A. Kolmer ◽  
M. E. Ordoñez

Isolates of Puccinia triticina collected from common wheat in the Central Asia countries of Kazakhstan, Uzbekistan, Tajikistan, and Kyrgyzstan and the Caucasus countries of Azerbaijan, Georgia, and Armenia were tested for virulence to 20 isolines of Thatcher wheat with different leaf rust resistance genes and molecular genotype at 23 simple sequence repeat (SSR) loci. After clone correction within each country, 99 isolates were analyzed for measures of population diversity, variation at single SSR loci, and for genetic differentiation of virulence phenotypes and SSR genotypes. Isolates from Central Asia and the Caucasus were also compared with 16 P. triticina isolates collected from common wheat in North America that were representative of the virulence and molecular variation in this region and two isolates collected from durum wheat in France and the United States. Populations from the Caucasus, Uzbekistan, Tajikistan, and Kyrgyzstan were not significantly (P > 0.05) differentiated for SSR variation with Fst and Rst statistics. Populations from the Caucasus, Uzbekistan, Tajikistan, and Kyrgyzstan were significantly (P < 0.05) differentiated from the populations in South and North Kazakhstan for SSR variation. All populations from Central Asia and the Caucasus were significantly differentiated from the North American isolates and isolates from durum wheat for SSR variation and virulence phenotypes. There was a correlation between virulence phenotype and SSR genotype among individual isolates and at the population level. Mountain barriers may account for the differentiation of P. triticina geographic populations in Central Asia and the Caucasus.

Plant Disease ◽  
2010 ◽  
Vol 94 (4) ◽  
pp. 420-424 ◽  
Author(s):  
Paola Mantovani ◽  
Marco Maccaferri ◽  
Roberto Tuberosa ◽  
James Kolmer

Twenty-four isolates of Puccinia triticina from Italy were characterized for virulence to seedlings of 22 common wheat Thatcher isolines, each with a different leaf rust resistance gene, and for molecular genotypes at 15 simple sequence repeat (SSR) loci. The isolates were compared to a set of 13 previously characterized P. triticina isolates from either durum or common wheat. Clustering based on virulence phenotypes and SSR genotypes grouped the Italian P. triticina isolates into three groups. In the first group, the isolates had virulence phenotypes and SSR genotypes that were similar to the isolates collected from durum wheat. Isolates in the second group were unique because they had virulence similar to the isolates from common wheat but were distinct for SSR genotypes compared to the isolates from durum wheat and from common wheat. Isolates in the third group had virulence phenotypes and SSR genotypes closely related to the isolates from common wheat. The isolates were grouped based on the known or assumed host of origin, virulence phenotype, and SSR genotypes. Measures of FST and RST for SSR genotypes, and ΦST for virulence phenotype were significant, which indicated differentiation among the three groups of isolates. Virulence phenotypes and molecular genotypes were highly correlated with r = 0.74.


2011 ◽  
Vol 101 (7) ◽  
pp. 870-877 ◽  
Author(s):  
J. A. Kolmer ◽  
M. E. Ordoñez ◽  
J. Manisterski ◽  
Y. Anikster

Leaf rust of wheat, caused by Puccinia triticina, is a common and widespread disease in the Middle East. The objective of this study was to determine whether genetically differentiated groups of P. triticina are present in the Middle East region and to compare the population from the Middle East with the previously characterized population from Central Asia to determine whether genetically similar groups of isolates are found in the two regions. In total, 118 isolates of P. triticina collected from common wheat and durum wheat in Egypt, Israel, Turkey, Ethiopia, and Kenya were tested for virulence on 20 lines of wheat with single genes for leaf rust resistance and for molecular genotypes with 23 simple-sequence repeat (SSR) markers. After removal of isolates with identical virulence and SSR genotype in each country, 103 isolates were retained for further analysis. Clustering of SSR genotypes based on two-dimensional principal coordinates and virulence to wheat differential lines grouped the isolates into four Middle East (ME) groups. The two largest ME groups had virulence phenotypes typical of isolates collected from common wheat and two smaller ME groups had virulence typical of isolates collected from durum wheat. All pairs of ME groups were significantly differentiated for SSR genotype based on RST and FST statistics, and for virulence phenotype based on ΦPT. All ME groups had observed values of heterozygosity greater than expected and significant fixation indices that indicated the clonal reproduction of urediniospores in the overall population. Linkage disequilibria for SSR genotypes was high across the entire population. The overall values of RST and FST were lower when isolates were grouped by country of origin that indicated the likely migration of isolates within the region. Although the two ME groups with virulence typical of isolates from common wheat were not differentiated for SSR genotype from groups of isolates from Central Asia based on RST, there was no direct evidence for migration between the two regions because all ME isolates differed from the Central Asia isolates for SSR genotypes.


2007 ◽  
Vol 97 (3) ◽  
pp. 344-351 ◽  
Author(s):  
M. E. Ordoñez ◽  
J. A. Kolmer

A total of 78 isolates of Puccinia triticina from durum wheat from Argentina, Chile, Ethiopia, France, Mexico, Spain and the United States and 10 representative isolates of P. triticina from common wheat from the United States were tested for virulence phenotypes on seedling plants of 35 near-isogenic lines of Thatcher wheat. Isolates with virulence on lines with leaf rust resistance genes Lr10, Lr14b, Lr20, Lr22a, Lr23, Lr33, Lr34, Lr41, and Lr44 represented the most frequent phenotype. Cluster analysis showed that P. triticina from durum wheat from South America, North America, and Europe had an average similarity in virulence of 90%, whereas isolates from Ethiopia were <70% similar to the other leaf rust isolates collected from durum wheat. Of the 11 isolates from Ethiopia, 7 were avirulent to Thatcher and all near-isogenic lines of Thatcher. The isolates from common wheat had an average similarity in virulence of 60% to all leaf rust isolates from durum wheat. P. triticina from durum wheat was avirulent to many Lr genes frequently found in common wheat. It is possible that P. triticina currently found on durum wheat worldwide had a single origin, and then spread to cultivated durum wheat in North America, South America, and Europe, whereas P. triticina from Ethiopia evolved on landraces of durum wheat genetically distinct from the cultivated durum lines grown in Europe and the Americas.


2002 ◽  
Vol 101 (657) ◽  
pp. 330-336 ◽  
Author(s):  
Svante E. Cornell

American engagement with the countries of the Caucasus and Central Asia needs to be clear and predictable. The United States has the potential to play an important stabilizing role in the region, but as long as uncertainty surrounds its commitment, America's role may instead be destabilizing if other powers try to test its determination to remain engaged.


After the 1990, it is very important that in the immediate vicinity of the geopolitical changes that have occurred in Turkey. The first changes is Iran and Iraq on the edge. Especially the Turkey-Iran and Iraq, all kinds of geopolitical developments occurring in the triple border, to a critical value. Because the triple border Iran and Iraq by Turkey as a safety check. For this reason, has become the center of all kinds of illegal developments. Iran, conducts a policy of asymmetric after 1990, in the Caucasus, and the Middle East and Central Asia geography. This policy from time to time an anti-U.S. hostility toward the West and exacerbate. The attitude of the West and the United States due to the foreign policy of Turkey's neighbor Iran rather problematic periods. Because the entire Middle East and Central Asia, Turkey's policies on Iran, which is a pretty effective. For this reason, Iran, Turkey is a country that needs to be analyzed by far the best.


2019 ◽  
Vol 56 (2-3) ◽  
pp. 79-91
Author(s):  
S. Frederick Starr

To date, the US response to the Chinese Belt and Road Initiative (BRI) in Central Asia and the Caucasus has been calm, if not tacitly supportive. Two main reasons for this are: (a) the reopening of age-old east–west trade corridors as one of the most important legacies of the collapse of the USSR and (b) it views the engagement of both China and Europe in east–west trade across Central Asia as furthering the Central Asians’ own ability to achieve balanced and positive relations between all the major powers, thereby constraining hegemonic aspirations from any quarter. Further, the United States supports the emergence of Central Asia as a defined world region akin to ASEAN or the Nordic Council and believes that reforms under way in Uzbekistan and elsewhere in the region serve that end as well as increase east–west and west–east trade across the region. Finally, the United States realizes that the ultimate judgement on the viability of BRI in Central Asia and the Caucasus will be that of the market and not geopolitics.


2021 ◽  
Vol 12 ◽  
Author(s):  
Qing Bai ◽  
Anmin Wan ◽  
Meinan Wang ◽  
Deven R. See ◽  
Xianming Chen

Stripe rust, caused by Puccinia striiformis f. sp. tritici (Pst), is a serious disease on wheat in the United States, especially after 2000. In the present study, 2,247 Pst isolates collected over all stripe rust epidemiological regions in the United States from 2010 to 2017 were genotyped at 14 simple sequence repeat (SSR) loci to investigate the population diversity, dynamics, and differentiation. A total of 1,454 multilocus genotypes (MLGs) were detected. In general, the populations in the west (regions 1–6) had more MLGs and higher diversities than the populations in the east (regions 7–12). The populations of 2010 and 2011 were more different from the other years. Genetic variation was higher among years than among regions, indicating the fast changes of the population. The divergence (Gst) was bigger between the west population and east population than among regions within either the west or east population. Gene flow was stronger among the regional populations in the east than in the west. Clustering analyses revealed 3 major molecular groups (MGs) and 10 sub-MGs by combining the genotypic data of 2010–2017 isolates with those of 1968–2009. MG1 contained both 1968–2009 isolates (23.1%) and 2010–2017 isolates (76.9%). MG2 had 99.4% of isolates from 1968–2009. MG3, which was the most recent and distinct group, had 99.1% of isolates from 2010–2017. Of the 10 sub-MGs, 5 (MG1-3, MG1-5, MG3-2, MG3-3, and MG3-4) were detected only from 2011 to 2017. The SSR genotypes had a moderate, but significant correlation (r = 0.325; p &lt; 0.0001) with the virulence phenotype data. The standard index values of association (rbarD = 0.11) based on either regional or yearly populations suggest clonal reproduction. This study indicated high diversity, fast dynamics, and various levels of differentiation of the Pst population over the years and among epidemiological regions, and the results should be useful for managing wheat stripe rust.


Plant Disease ◽  
2015 ◽  
Vol 99 (1) ◽  
pp. 156-156 ◽  
Author(s):  
J. A. Kolmer

Phenotypes of the wheat leaf rust pathogen Puccinia triticina with high virulence to tetraploid durum wheat (Triticum turgidum) are found regularly in Mexico (5), the Mediterranean region (1), the Middle East (3), and rarely in the Imperial Valley of California and the adjacent area in Arizona. Previous to 2013, these phenotypes had not been found in the Great Plains region of the United States where hexaploid, T. aestivum types of hard red winter wheat, hard red spring wheat, and durum wheat are grown. In May 2013, collections of P. triticina, the wheat leaf rust fungus identified by color, size, and shape of uredinia, were obtained from leaves of the hard red winter wheat cultivar Overley in research plots at Hutchinson, KS. A single uredinial isolate was obtained that was used in virulence testing and molecular genotyping. Urediniospores from the initial field collection were inoculated onto seedlings of the susceptible cultivar Little Club. Subsequently, single uredinia were isolated and re-increased on Little Club. The single uredinial isolate was initially inoculated to 7-day-old seedlings of 20 lines of Thatcher wheat that are near-isogenic for leaf rust resistance genes and are used in the annual virulence surveys of P. triticina in the United States (2). The phenotype of the isolate, based on virulence to the 20 differential lines, was BBBQD (2), which was identical to phenotypes of P. triticina with high virulence to durum wheat from other regions where durum wheat is commonly grown (4). This phenotype had intermediate infection type of 2+ (moderate size uredinia with chlorosis) to the line with Lr2c and high infection types of 3+ (large uredinia with no chlorosis or necrosis) to lines with genes LrB, Lr10, and Lr39/41. Overley wheat has Lr39/41. The isolate was further tested on an additional set of 27 Thatcher lines, the cultivar Gatcher with Lr27 + Lr31, and a set of 15 durum wheat cultivars that have been grown in the United States and Canada. The isolate had virulence to lines with genes Lr14b, Lr20, Lr23, Lr33, Lr44, and Lr64. Notably, the isolate had distinct low infection types to seedlings of Thatcher lines with genes Lr12, Lr13, Lr22a, Lr35, and Lr37 that are usually optimally expressed in adult plants to most P. triticina isolates. The isolate had high virulence to all of the durum wheat cultivars. The single uredinial isolate of P. triticina from Overley was also genotyped with microsatellite alleles used in previous studies with P. triticina collections from durum wheat (3). The isolate from Kansas had a highly similar genotype to other isolates of P. triticina from worldwide durum-producing regions (3). This isolate with high virulence to durum wheat most likely migrated to the southern Great Plains region from the durum-growing regions in Mexico. Cultivars such as TAM 112, Armour, Winterhawk, and Bullet with Lr39/41 and other cultivars with Overley in their pedigree are currently grown throughout the southern Great Plains. Since many of the P. triticina phenotypes with high virulence to durum wheat are virulent to Lr39/41, these cultivars may provide a pathway for the spread of these phenotypes to the major durum-producing areas of North Dakota and Saskatchewan. References: (1) H. J. Goyeau et al. Plant Pathol. 61:761, 2012. (2) J. A. Kolmer and M. A. Hughes. Plant Dis. 97:1103, 2013. (3) M. E. Ordoñez and J. A. Kolmer. Phytopathology 97:574, 2007. (4) M. E. Ordoñez and J. A. Kolmer. Phytopathology 97:344, 2007. (5) R. P. Singh et al. Plant Dis. 88:703, 2004.


1999 ◽  
Vol 77 (3) ◽  
pp. 333-338 ◽  
Author(s):  
J A Kolmer

Populations of Puccinia triticina (causal agent of wheat leaf rust) in Ontario, Quebec, Manitoba, and Saskatchewan were analysed for frequency of isolates with virulence to leaf rust resistance genes Lr1, Lr2a, Lr2c, Lr3, Lr9, Lr16, Lr24, Lr26, Lr3ka, Lr11, Lr17, and Lr30 for the years 1987-1997. Winter wheats in the southern plains of the United States with resistance genes Lr24, Lr26, Lr11, Lr3ka, Lr17, and Lr16 selected virulent P. triticina phenotypes in the Manitoba and Saskatchewan population. The P. triticina population in Quebec and Ontario was comparatively stable, showing no directional trends in selection of virulence phenotypes. In the Manitoba and Saskatchewan population, diversity of virulence phenotypes changed relatively little despite the selection that occurred in this population. The average number of virulences per isolate in the Manitoba and Saskatchewan population increased from 1987 to 1994 during the period of selection for virulence to Lr24, Lr26, Lr3ka, and Lr11, and declined from 1995 to 1997 when selection for virulence to Lr16 and Lr17 occurred. The most complex virulence phenotypes were not necessarily selected in the Manitoba and Saskatchewan population because of how the resistance genes were deployed in the host population and the nonrandom distribution of virulences in the P. triticina population.Key words: Puccinia recondita f.sp. tritici, specific resistance, wheat leaf rust, Triticum aestivum, specific virulence.


Plant Disease ◽  
2021 ◽  
pp. PDIS-09-20-1927
Author(s):  
Elena I. Gultyaeva ◽  
Ekaterina L. Shaydayuk ◽  
Igor A. Kazartsev ◽  
Evsey Kosman

Variability of the Russian population of Puccinia triticina from durum wheat was studied with virulence and simple sequence repeat (SSR) markers. The pathogen was sampled during 2017 to 2019 in all regions with sizable durum wheat (Triticum durum) growing areas from winter (North Caucasus) and spring (Middle Volga, Ural, and West Siberia) wheat. A total of 474 isolates were tested on a set of 20 Lr-gene lines. Molecular genotypes for 105 selected isolates were determined at 11 SSR loci. Variable virulence/avirulence reaction was observed only on three Lr-gene lines, whereas just five SSR loci were polymorphic with two alleles at each. Seven different virulence phenotypes and 11 SSR genotypes were found among 474 and 105 isolates, respectively, indicating a very low variability of the pathogen. One virulence phenotype and three SSR genotypes occurred in all Russian regions. However, two phenotypes were specific to the European regions of Russia (North Caucasus and Middle Volga), while another two were found only in the Asian part of Russia (Ural and West Siberia). Significant differentiation between six populations of P. triticina from durum wheat in the Asian and European (mainly North Caucasus) regions was also shown with numerous metrics and approaches for data with and without clone correction. Relationships among the regional populations of P. triticina from durum wheat established with virulence phenotypes significantly associated with those for SSR genotypes and was similar to the relationships among the regional populations of the pathogen from common wheat.


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