scholarly journals A phylogenetic framework of the legume genusAeschynomenefor comparative genetic analysis of the Nod-dependent and Nod-independent symbioses

2018 ◽  
Author(s):  
Laurent Brottier ◽  
Clémence Chaintreuil ◽  
Paul Simion ◽  
Céline Scornavacca ◽  
Ronan Rivallan ◽  
...  
Keyword(s):  
Chromosome Number ◽  
Diploid Species ◽  
Taxon Sampling ◽  
List Type ◽  
Legume Species ◽  
Comparative Genetics ◽  
Nod Factor ◽  
Phylogenetic Framework ◽  
Comparative Genetic Analysis ◽  
Backbone Tree

SUMMARYSomeAeschynomenelegume species have the property of being nodulated by photosyntheticBradyrhizobiumlacking thenodABCgenes. Knowledge of this unique Nod (factor)-independent symbiosis has been gained from the modelA. eveniabut our understanding remains limited due to the lack of comparative genetics with related taxa using a Nod-dependent process.To fill this gap, this study significantly broadened previous taxon sampling, including in allied genera, to construct a comprehensive phylogeny. This backbone tree was matched with data on chromosome number, genome size, low-copy nuclear genes and strengthened by nodulation tests and a comparison of the diploid species.The phylogeny delineated five main lineages that all contained diploid species while polyploid groups were clustered in a polytomy and were found to originate from a single paleo-allopolyploid event. In addition, new nodulation behaviours were revealed and Nod-dependent diploid species were shown to be tractable.The extended knowledge of the genetics and biology of the different lineages in the legume genusAeschynomeneprovides a solid research framework. Notably, it enabled the identification ofA. americanaandA. patulaas the most suitable species to undertake a comparative genetic study of the Nod-independent and Nod-dependent symbioses.

scholarly journals Relations and evolution in Cheilanthes (Sinopteridaceae, Pteridophita) in Macaronesia and Mediterranean area, deduced from genome analysis of their hybrids

1983 ◽  
Vol 8 ◽  
pp. 101-126 ◽  
Author(s):  
G. Vida ◽  
A. Major ◽  
T. Reichstein
Keyword(s):  
Chromosome Number ◽  
Genome Analysis ◽  
Chromosome Doubling ◽  
Diploid Species ◽  
Mediterranean Area ◽  
Basic Chromosome Number ◽  
The Other ◽  
Experimental Conditions ◽  
Natural Group ◽  
Basic Chromosome

Nine species of "Cheilantoid ferns" are known to grow in Macaronesia and the Mediterranean basin. Two of them (lacking a pseudo-indusium and having the basic chromosome number X = 29), both aggregate species which we prefer to retain in Notholaena, are not included in this study. The other seven species (with distinct pseudo-indusium and the basic chromosome number X = 30), which we accept as members of the genus Cheilanthes Sw. sensu stricto, were subjected to detailed genome analysis of their natural and experimentally produced hybrids and shown to represent an aggregate of four very distinct ancestral diploids and three allotetraploids. The latter must have once been formed by chromosome doubling in the three diploid hybrids of C. maderensis Lowe with the other three diploid species. Theoretically three more allotetraploids would be possible but their formation has obviously been prevented by the geographical separation of the three respective diploids. The most widely distributed of the tetraploids, i.e. C. pteridioides (Reich.) C.Chr. has also been resynthesized from its ancestors (still sympatric) under experimental conditions. The intermediate morphology of the allotetraploids (as compared with their diploid ancestors) is obviously the reason why their status and existence has so long escaped recognition in Europe. These seven species form a natural group and, in our opinion, should not be divided into sections.

CHROMOSOME NUMBER, VOLUME AND NUCLEAR VOLUME RELATIONSHIPS IN A POLYPLOID SERIES (2X-20X) OF THE GENUS RUMEX

1971 ◽  
Vol 13 (4) ◽  
pp. 842-863 ◽  
Author(s):  
S. Ichikawa ◽  
A. H. Sparrow ◽  
C. Frankton ◽  
Anne F. Nauman ◽  
E. B. Smith ◽  
...  
Keyword(s):  
Chromosome Number ◽  
Chromosome Numbers ◽  
Abrupt Change ◽  
Diploid Species ◽  
Nuclear Volume ◽  
Polyploid Series ◽  
Unidentified Species

Ninety-one acquisitions of the genus Rumex obtained from various sources were examined taxonomically and cytologically. These acquisitions included 36 species plus 2 unidentified species. The chromosome numbers counted were 2n = 14 (or 15), 16, 18, 20, 40, 42, 60, 80, 100, 120, 140, 160, ca. 170, 180 and ca. 200. The count of 2n = 180 made on one of the R. orbiculatus acquisitions is a new count for this genus, but other acquisitions had 160 and ca. 170. First counts were obtained for four species, R. frutescens (2n = 160), R. crystallinus (2n = 60), R. cristatus (2n = 80) and R. tenax (2n = 80). The count of 2n = 160 for R. frutescens is the highest chromosome number ever reported in the section Axillares. The chromosome numbers determined in R. palustris (2n = 60), R. confertus (2n = 100), R. arcticus (2n = 120) and R. aquaticus (2n = 140) differ from previously published counts. Our counts for eight other species support one of the previous counts where two or more counts are reported. It is shown that the species of the subgenus Acetosa sections Acetosa and Vesicarii and of the subgenus Platypodium have relatively large chromosomes, those of the subgenus Acetosa section Scutati and of the subgenus Acetosella have medium-sized chromosomes, and the members of the subgenus Rumex sections Axillares and Rumex have smaller chromosomes. The chromosomes of the diploid species of the section Rumex were larger than those of the polyploids (4x to 20x) of the same section. Within the section Rumex the log of nuclear volume increased with increasing ploidy, with an abrupt change (decrease) in slope between the 12x and 14x levels.

Cytological and molecular analysis of annual species of the genus Medicago

1996 ◽  
Vol 74 (2) ◽  
pp. 299-307 ◽  
Author(s):  
A. Mariani ◽  
F. Pupilli ◽  
O. Calderini
Keyword(s):  
Chromosome Number ◽  
Molecular Analysis ◽  
Genetic Relationship ◽  
Diploid Species ◽  
Rflp Analysis ◽  
Molecular Study ◽  
Annual Species ◽  
Genetic Affinity ◽  
Karyological Analysis ◽  
Medicago Rugosa

Medicago rugosa and M. scutellata, two annual species of the genus Medicago, have aroused considerable interest because they carry useful traits that could be introduced into alfalfa and have a chromosome number (2n = 30) that is quite unusual in Medicago. A cytogenetic and molecular study was undertaken to investigate the annual diploid species with 2n = 16 and 2n = 14 that seem to be the most closely related to M. rugosa and M. scutellata, with the aim of characterizing these diploid species and determining their genetic relationship with the species with 2n = 30. Karyological analysis established that some of the diploid species investigated were more similar than the others to both M. rugosa and M. scutellata (as in the case of M. intertexta, M. rotata, and M. polymorpha) or at least to one of those two species (as was the case with M. doliata, M. muricoleptis, and M. murex). RFLP analysis identified four species, namely M. intertexta and M. muricoleptis with 2n = 16, and M. polymorpha and M. murex with 2n = 14, as having the highest degree of genetic affinity with the two species with 30 chromosomes. These findings suggest the possibility of identifying the ancestors of M. rugosa and M. scutellata among those four species and therefore of verifying the probable allopolyploid origin of the two species in question. Keywords: Medicago, annual species, karyotypes, RFLPs.

NULLISOMIC ANALYSIS OF NUCLEOLAR FORMATION IN ZEA MAYS

1978 ◽  
Vol 20 (1) ◽  
pp. 97-100 ◽  
Author(s):  
David F. Weber
Keyword(s):  
Zea Mays ◽  
Chromosome Number ◽  
Zea Mays L ◽  
Diploid Species ◽  
5S Rrna ◽  
Chromosome 6 ◽  
Chromosome 2 ◽  
Nucleolar Organizing Region

When a monosomic plant of a diploid species undergoes meiosis, two haploid and two nullisomic cells are produced. Zea mays L. microspore quartet cells nullisomic for chromosome number 1, 2, 4, 6, 7, 8, 9, or 10 produced by monosomics were analyzed. Cells nullisomic for chromosome 6, as expected, do not contain a nucleolus because chromosome 6 bears the nucleolar organizing region. Cells nullisomic for chromosome 2 contain nucleoli; therefore, the 5S rRNA template on chromosome 2 is not necessary for nucleolar formation. Cells nullisomic for chromosomes 1, 4, 7, 8, 9, or 10 also contain nucleoli; thus, no factors located on these chromosomes are necessary for nulceolar formation at the quartet stage.

scholarly journals Use of Wild Arachis Species/Introgression of Genes into A. hypogaea L.

2001 ◽  
Vol 28 (2) ◽  
pp. 114-116 ◽  
Author(s):  
C. E. Simpson
Keyword(s):  
North Carolina ◽  
Chromosome Number ◽  
Wild Species ◽  
Diploid Species ◽  
Breeding Lines ◽  
B Genome ◽  
Improvement Programs ◽  
Selection For ◽  
Direct Dna Delivery ◽  
No Releases

Abstract The use of wild Arachis L. in cultivar improvement programs has been considered an option for more than 50 yr. Both A. Krapovickas and W.C. Gregory, independently, made interspecific hybridizations in the 1940s. However, only three cultivars have been released as a result of interspecific hybridizations, and only one of those has a clearly identifiable genetic component from the wild species. Several breeding lines have been reported and several germplasm releases are documented from Texas, North Carolina, and ICRISAT. At least four potential options exist for transferring genes from wild Arachis to the cultigen: a) The hexaploid pathway consists of crossing a diploid wild species directly with A. hypogaea, doubling the chromosome number to the hexaploid level, then backcrossing for several generations to restore the tetraploid condition. Several options are possible in this pathway involving various crossing schemes prior to crossing a diploid hybrid with A. hypogaea. North Carolina and ICRISAT have had success with this pathway. b) The diploid/tetraploid pathway has been the most successful in Texas to date. This pathway involves crossing diploid species (two to several), doubling the chromosome number of the hybrid, then crossing to A. hypogaea and backcrossing with selection for the desired character. This pathway is most successful when both A-and B-genome species are involved. Germplasm lines and a cultivar have been released in Texas using this pathway. c) Another diploid/tetraploid pathway could be to double chromosome numbers of diploid species and cross the amphiploids directly with A. hypogaea. Several attempts have been made with this technique, but no germplasm releases have been reported, in large part because sterility is too great when both A and B genomes are not included in the hybrid. Many of the sections/species of wild Arachis are so greatly isolated from A. hypogaea that plant transformation will be the likely method to introduce genes into the cultigen. d) Molecular methods of “inserting” genes into peanut that have been modestly successful and include use of Agrobacterium spp., electroporation, and direct DNA delivery techniques such as the gene gun, whiskers, and sonication. No releases have resulted.

scholarly journals New insights into homoeologous copy number variations in the hexaploid wheat genome

2020 ◽  
Author(s):  
Caroline Juery ◽  
Lorenzo Concia ◽  
Romain De Oliveira ◽  
Nathan Papon ◽  
Ricardo Ramírez-González ◽  
...  
Keyword(s):  
Hexaploid Wheat ◽  
Core Genome ◽  
Diploid Species ◽  
Housekeeping Genes ◽  
Copy Number Variations ◽  
List Type ◽  
The Core ◽  
History Of ◽  
Function Expression ◽  
Dispensable Genome

AbstractBread wheat is an allohexaploid species originating from two successive and recent rounds of hybridization between three diploid species that were very similar in terms of chromosome number, genome size, TE content, gene content and synteny. As a result, it has long been considered that most of the genes were in three pairs of homoeologous copies. However, these so-called triads represent only one half of wheat genes, while the remaining half belong to homoeologous groups with various number of copies across subgenomes. In this study, we examined and compared the distribution, conservation, function, expression and epigenetic profiles of triads with homoeologous groups having undergone a deletion (dyads) or a duplication (tetrads) in one subgenome. We show that dyads and tetrads are mostly located in distal regions and have lower expression level and breadth than triads. Moreover, they are enriched in functions related to adaptation and more associated with the repressive H3K27me3 modification. Altogether, these results suggest that triads mainly correspond to housekeeping genes and are part of the core genome, while dyads and tetrads belong to the Triticeae dispensable genome. In addition, by comparing the different categories of dyads and tetrads, we hypothesize that, unlike most of the allopolyploid species, subgenome dominance and biased fractionation are absent in hexaploid wheat. Differences observed between the three subgenomes are more likely related to two successive and ongoing waves of post-polyploid diploidization, that had impacted A and B more significantly than D, as a result of the evolutionary history of hexaploid wheat.Core ideasOnly one half of hexaploid wheat genes are in triads, i.e. in a 1:1:1 ratio across subgenomesTriads are likely part of the core genome; dyads and tetrads belong to the dispensable genomeSubgenome dominance and biased fractionation are absent in hexaploid wheatSubgenome differences are related to two successive waves of post-polyploid diploidization

scholarly journals Deceptive conservatism of claws: distinct phyletic lineages concealed within Isohypsibioidea (Eutardigrada) revealed by molecular and morphological evidence

2019 ◽  
Vol 88 (1) ◽  
pp. 78-132 ◽  
Author(s):  
Piotr Gąsiorek ◽  
Daniel Stec ◽  
Witold Morek ◽  
Łukasz Michalczyk
Keyword(s):  
Morphological Evidence ◽  
Taxon Sampling ◽  
Microscopy Imaging ◽  
Claw Morphology ◽  
Phylogenetic Framework ◽  
Light Contrast ◽  
Diagnostic Key ◽  
First Time ◽  
Scanning Electron ◽  
Comprehensive Study

Isohypsibioidea are most likely the most basally branching evolutionary lineage of eutardigrades. Despite being second largest eutardigrade order, phylogenetic relationships and systematics within this group remain largely unresolved. Broad taxon sampling, especially within one of the most speciose tardigrade genera, Isohypsibius Thulin, 1928, and application of both comparative morphological methods (light contrast and scanning electron microscopy imaging of external morphology and buccal apparatuses) and phylogenetic framework (18S + 28S rRNA sequences) resulted in the most comprehensive study devoted to this order so far. Two new families are erected from the currently recognised family Isohypsibiidae: Doryphoribiidae fam. nov., comprising all aquatic isohypsibioids and some terrestrial isohypsibioid taxa equipped with the ventral lamina; and Halobiotidae fam. nov., secondarily marine eutardigrades with unique adaptations to sea environment. We also split Isohypsibius into four genera to accommodate phylogenetic, morphological and ecological variation within the genus: terrestrial Isohypsibius s.s. (Isohypsibiidae), with smooth or sculptured cuticle but without gibbosities; terrestrial Dianea gen. nov. (Isohypsibiidae), with small and pointy gibbosities; terrestrial Ursulinius gen. nov. (Isohypsibiidae), with large and rounded gibbosities; and aquatic Grevenius gen. nov. (Doryphoribiidae fam. nov.), typically with rough cuticle and claws with branches of very similar heigths. Claw morphology is reviewed and, for the first time, shown to encompass a number of morphotypes that correlate with clades recovered in the molecular analysis. The anatomy of pharynx and cuticle are also shown to be of high value in distinguishing supraspecific taxa in Isohypsibioidea. Taxonomy of all isohypsibioid families and genera is discussed, with special emphasis on the newly erected entities. Finally, a dychotomous diagnostic key to all currently recognised isohypsibioid families and genera is provided.

The biosystematics of the genus Lotus (Leguminosae) in Canada. II. Numerical chemotaxonomy

1968 ◽  
Vol 46 (5) ◽  
pp. 585-589 ◽  
Author(s):  
William F. Grant ◽  
Ilse I. Zandstra
Keyword(s):  
Chromosome Number ◽  
Thin Layer ◽  
Native Species ◽  
Cytological Study ◽  
Diploid Species ◽  
Basic Chromosome Number ◽  
Chromatographic Study ◽  
Chemical Identification ◽  
Basic Chromosome ◽  
Fluorescent Compounds

A thin-layer chromatographic study of fluorescent compounds present in native (L. denticulatus, L. formosissimus, L. micranthus, L. pinnatus, L. purshianus) and introduced (L. corniculatus, L. krylovii, L.pedunculatus, L. tenuis) Canadian species of Lotus has been carried out and relationships of the species have been determined on the basis of the coefficients of association of these compounds. Chemical identification of the compounds was not attempted, but test reagents indicated a number to be phenolics. The analysis supported the general taxonomic relationships of the species based on a morphological and cytological study. Of the native species, L. pinnatus and L. formosissimus were the most closely related, with a coefficient of association of 83.33. Lotus denticulatus, the only native species with a chromosome number of n = 6, in general showed lower coefficients of association with the n = 7 species. Of the introduced species, all of which belong to the L. corniculatus group with a basic chromosome number of 6, L. krylovii and L. tenuis had the highest coefficient of association, 75.86. Based on their coefficients of association, both of these diploid species were more closely related to the tetraploid L. corniculatus than to the diploid L. pedunculatus.

Extensive plastid-nuclear discordance in a recent radiation of Nicotiana section Suaveolentes (Solanaceae)

2020 ◽  
Vol 193 (4) ◽  
pp. 546-559 ◽  
Author(s):  
Steven Dodsworth ◽  
Maarten J M Christenhusz ◽  
John G Conran ◽  
Maïté S Guignard ◽  
Sandra Knapp ◽  
...  
Keyword(s):  
Chromosome Number ◽  
Arid Zone ◽  
Far East ◽  
Morphological Differentiation ◽  
French Polynesia ◽  
Taxon Sampling ◽  
The Core ◽  
Plastid Genomes ◽  
Allotetraploid Species ◽  
Initial Results

Abstract Nicotiana section Suaveolentes is the largest section of Nicotiana and is a monophyletic group of allotetraploid species. Most of the species are endemic to Australia, but three species occur on islands in the South Pacific as far east as French Polynesia and one species is native to Namibia. Here, we present phylogenetic results based on genome skimming, with near-complete taxon sampling and multiple accessions sampled for several species. These represent the first phylogenetic results for the section that include most recognized taxa, using wild-sourced material wherever possible. Despite known chromosome number and genome size changes in the section, there is little divergence in the ribosomal DNA operon (26S, 18.S and 5.8S plus associated spacers) and plastid genomes, with little to no taxonomic signal in plastome phylogenetic results and clear plastid-nuclear discordance. These results contrast with strong morphological differentiation (both floral and vegetative) between most of the core Australian taxa and obvious differences in ecological preferences. Together, these initial results portray Nicotiana section Suaveolentes as experiencing recent and ongoing radiation in the arid zone of Australia.

CYTOGENETIC STUDIES IN AMARANTHUS: II. NATURAL INTERSPECIFIC HYBRIDIZATION BETWEEN AMARANTHUS DUBIUS AND A. SPINOSUS

1959 ◽  
Vol 37 (5) ◽  
pp. 1063-1070 ◽  
Author(s):  
William F. Grant
Keyword(s):  
Chromosome Number ◽  
Parental Species ◽  
Diploid Species ◽  
Gene Exchange ◽  
Stomatal Size ◽  
Amaranthus Spinosus ◽  
Cytogenetic Studies ◽  
Mean Size ◽  
Pollen Grain Size ◽  
The Mean

Spontaneous triploid hybrids (2n = 49) were discovered between Amaranthus spinosus L. (2n = 34), a diploid species, and A. dubius Mart. ex Thellung (2n = 64) which was found to be a tetraploid. Meiosis in the hybrids was irregular and 15 univalents were most frequently found along with the bivalents pairing apparently allosyndetically (15 I's + 17 II's = 2n = 49) at metaphase I. Univalents were excluded from the telophase nuclei in both meiotic divisions resulting in supernumerary microspores and in a reduction in the mean size of the microspores. Consequently, the triploids were largely sterile and the few undersized seeds produced failed to germinate. Seed weight, seed volume, stomatal size, and pollen grain size were proportional to chromosome number in the parents only, not in their hybrids. Since A. dubius exhibits typical bivalent behavior in synapsis, it is considered to be an allotetraploid in which A. spinosus has been one progenitor. It is suggested that the diploid A. quitensis H. B. K. (2n = 32) might be the other progenitor, but from chromosome number relationships and morphological considerations more than two species may be involved. As a result of the high sterility of the triploids, gene exchange between the parental species must be of a very limited nature.

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