scholarly journals Metabolic excretion associated with nutrient-growth dysregulation promotes the rapid evolution of an overt metabolic defect

2018 ◽  
Author(s):  
Robin Green ◽  
Sonal ◽  
Lin Wang ◽  
Samuel F.M. Hart ◽  
Wenyun Lu ◽  
...  

AbstractIn eukaryotes, conserved mechanisms ensure that cell growth is coordinated with nutrient availability. Overactive growth during nutrient limitation (“nutrient-growth dysregulation”) can lead to rapid cell death. Here, we demonstrate that cells can adapt to nutrient-growth dysregulation by evolving major metabolic defects. Specifically, when yeast lysine auxotrophic mutant lys- encountered lysine limitation, an evolutionarily novel stress, cells suffered nutrient-growth dysregulation. A sub-population repeatedly evolved to lose the ability to synthesize organosulfurs (lys-orgS-). Organosulfurs, mainly glutathione and glutathione conjugates, were released by lys- cells during lysine limitation when growth was dysregulated, but not during glucose limitation when growth was regulated. Limiting organosulfurs conferred a frequency-dependent fitness advantage to lys-orgS- by eliciting a proper slow growth program including autophagy. Thus, nutrient-growth dysregulation is associated with rapid organosulfur release, which enables the selection of organosulfur auxotrophy to better tune cell growth to the metabolic environment. We speculate that evolutionarily novel stresses can trigger atypical release of certain metabolites, setting the stage for the evolution of new ecological interactions.

Oncogenesis ◽  
2021 ◽  
Vol 10 (2) ◽  
Author(s):  
Yu Geon Lee ◽  
Hui Won Kim ◽  
Yeji Nam ◽  
Kyeong Jin Shin ◽  
Yu Jin Lee ◽  
...  

AbstractMitochondrial proteases are key components in mitochondrial stress responses that maintain proteostasis and mitochondrial integrity in harsh environmental conditions, which leads to the acquisition of aggressive phenotypes, including chemoresistance and metastasis. However, the molecular mechanisms and exact role of mitochondrial proteases in cancer remain largely unexplored. Here, we identified functional crosstalk between LONP1 and ClpP, which are two mitochondrial matrix proteases that cooperate to attenuate proteotoxic stress and protect mitochondrial functions for cancer cell survival. LONP1 and ClpP genes closely localized on chromosome 19 and were co-expressed at high levels in most human cancers. Depletion of both genes synergistically attenuated cancer cell growth and induced cell death due to impaired mitochondrial functions and increased oxidative stress. Using mitochondrial matrix proteomic analysis with an engineered peroxidase (APEX)-mediated proximity biotinylation method, we identified the specific target substrates of these proteases, which were crucial components of mitochondrial functions, including oxidative phosphorylation, the TCA cycle, and amino acid and lipid metabolism. Furthermore, we found that LONP1 and ClpP shared many substrates, including serine hydroxymethyltransferase 2 (SHMT2). Inhibition of both LONP1 and ClpP additively increased the amount of unfolded SHMT2 protein and enhanced sensitivity to SHMT2 inhibitor, resulting in significantly reduced cell growth and increased cell death under metabolic stress. Additionally, prostate cancer patients with higher LONP1 and ClpP expression exhibited poorer survival. These results suggest that interventions targeting the mitochondrial proteostasis network via LONP1 and ClpP could be potential therapeutic strategies for cancer.


2012 ◽  
Vol 25 (11) ◽  
pp. 1253-1262 ◽  
Author(s):  
Ladan Mirbahai ◽  
Martin Wilson ◽  
Christopher S. Shaw ◽  
Carmel McConville ◽  
Roger D. G. Malcomson ◽  
...  

2006 ◽  
Vol 18 (5) ◽  
pp. 592-600 ◽  
Author(s):  
Mathieu Vinken ◽  
Tamara Vanhaecke ◽  
Peggy Papeleu ◽  
Sarah Snykers ◽  
Tom Henkens ◽  
...  
Keyword(s):  

2020 ◽  
Author(s):  
Robyn Jerdan ◽  
Emily Donaldson ◽  
Scott Cameron ◽  
Andrew Spiers

<p>Static incubation of liquid microcosms results in a physically heterogeneous environment, where depletion of O<sub>2 </sub>in the lower region creates a relatively high-O<sub>2 </sub>niche directly below the air-liquid (A-L) interface. This has been investigated using the model bacterium <em>Pseudomonas fluorescens</em> SBW25 and the biofilm-forming adaptive mutant known as the Wrinkly Spreader. In this system, colonisation of the A-L interface by the Wrinkly Spreader provides a fitness advantage over non-biofilm-forming competitors, including the ancestral SBW25, due to better access to O<sub>2</sub> in an otherwise O<sub>2</sub>-growth limiting environment. Our current research seeks to understand how the ecological interactions of this simple system applies in more complex communities, where biofilms can be produced by multiple competing or co-operative strains and the low-O<sub>2</sub> region colonised by a range of strains capable of micro-aerobic growth. Here we report the effect of selection on the productivity of A-L interface biofilm-forming communities initiated by soil-wash (SW) inocula, which were serially transferred across ten microcosms and sixty days with mixed-community or biofilm-only samples. Initial analysis of the serial transfer experiments shows a decrease in community productivity which is explained by the accumulation of toxic metabolites, though small increases in community biofilm strength and attachment were also observed. Isolate-level analysis revealed a decrease in community diversity and a biofilm-associated phenotypic shift between the SW inocula and final-transfer communities, and these changes provide evidence of selection within our system.</p> <p>Cell-localisation experiments confirm enrichment at the top of the liquid column in the high-O<sub>2</sub> region, but also show high cell densities in the low-O<sub>2</sub> region, even within the biofilm-only final-transfer communities. Samples taken from the biofilm and lower region of these communities were able to re-colonise both in fresh microcosms, indicating that community members were capable of migration within the liquid column. Despite the over-all decrease seen in community productivity in the serial transfer experiments, we suggest that communities maximised productivity by colonising both regions of the liquid column, with a resource trade-off between fast growth in the highly competitive high-O<sub>2 </sub>region and slower growth in the less-competitive low-O<sub>2</sub> region. Many isolates from the final-transfer communities could occupy both regions and were capable of migration, with almost all isolates capable of flagella-mediated motility, and we interpret this ability to move between regions as a fitness advantage in A-L interface biofilm-forming communities. Although we have not been able to test this directly using the final-transfer communities or isolates, we have been able to demonstrate a fitness advantage in the less complex <em>P. fluorescens</em> SBW25 system, where biofilm-forming mutants capable of colonising both regions had a greater competitive fitness advantage over those with a poor ability to colonise the liquid column.</p>


2021 ◽  
Author(s):  
Carlos M. Duarte ◽  
David Ketcheson ◽  
Víctor M. Eguíluz ◽  
Susana Agustí ◽  
Juan Fernández-Gracia ◽  
...  

AbstractEvolutionary ecology theory provides an avenue to anticipate the future behavior of SARS-CoV-2. Here we quantify the accelerating evolution of SARS-CoV-2 by tracking the SARS-CoV-2 mutation globally, with a focus on the Receptor Binding Domain (RBD) of the spike protein believed to determine infectivity. We estimate that 384 million people were infected by March 1st, 2021, producing up to 1021 copies of the virus, with one new RBD variant appearing for every 600,000 human infections, resulting in approximately three new effective RBD variants produced daily. Doubling the number of RBD variants every 71.67 days followed by selection of the most infective variants challenges our defenses and calls for a shift to anticipatory, rather than reactive tactics.One-Sentence SummaryAccelerating evolution of SARS-CoV-2 demands formulating universal vaccines and treatments based on big-data simulations of possible new variants.


Biology Open ◽  
2021 ◽  
Vol 10 (8) ◽  

ABSTRACT First Person is a series of interviews with the first authors of a selection of papers published in Biology Open, helping early-career researchers promote themselves alongside their papers. Eunice Tan is first author on ‘ Motion: enhancing signals and concealing cues’, published in BiO. Eunice is Assistant Professor in the department of Environmental Studies, at Yale-NUS College, Singapore, investigating the ecological interactions between animals, their predators, and the environment.


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