Spatio-Temporal Crop Classification On Volumetric Data

Abstract. Crops are dynamically changing and time-critical in the growing season and therefore multitemporal earth observation data are needed for spatio-temporal monitoring of the crops. This study evaluates the impacts of classical roll-invariant polarimetric features such as entropy (H), anisotropy (A), mean alpha angle (&alpha;) and total scattering power (SPAN) for the crop classification from multitemporal polarimetric SAR data. For this purpose, five different data set were generated as following: (1) H&alpha;, (2) H&alpha;Span, (3) H&alpha;A, (4) H&alpha;ASpan and (5) coherency [T] matrix. A time-series of four PolSAR data (Radarsat-2) were acquired as 13 June, 01 July, 31 July and 24 August in 2016 for the test site located in Konya, Turkey. The test site is covered with crops (maize, potato, summer wheat, sunflower, and alfalfa). For the classification of the data set, three different models were used as following: Support Vector Machines (SVMs), Random Forests (RFs) and Naive Bayes (NB). The experimental results highlight that H&alpha;ASpan (91.43% for SVM, 92.25% for RF and 90.55% for NB) outperformed all other data sets in terms of classification performance, which explicitly proves the significant contribution of SPAN for the discrimination of crops. Highest classification accuracy was obtained as 92.25% by RF and H&alpha;ASpan while lowest classification accuracy was obtained as 66.99% by NB and H&alpha;. This experimental study suggests that roll-invariant polarimetric features can be considered as the powerful polarimetric components for the crop classification. In addition, the findings prove the added benefits of PolSAR data investigation by means of crop classification.

Download Full-text

E3 ubiquitin ligases

Essays in Biochemistry ◽

10.1042/bse0410015 ◽

2005 ◽

Vol 41 ◽

pp. 15-30 ◽

Cited By ~ 123

Author(s):

Helen C. Ardley ◽

Philip A. Robinson

Keyword(s):

Protein Complexes ◽

Loss Of Function ◽

Direct Role ◽

Cellular Processes ◽

Substrate Protein ◽

Protein Ubiquitination ◽

C Terminus ◽

Full Complement ◽

Spatio Temporal ◽

Eukaryotic Organisms

The selectivity of the ubiquitin–26 S proteasome system (UPS) for a particular substrate protein relies on the interaction between a ubiquitin-conjugating enzyme (E2, of which a cell contains relatively few) and a ubiquitin–protein ligase (E3, of which there are possibly hundreds). Post-translational modifications of the protein substrate, such as phosphorylation or hydroxylation, are often required prior to its selection. In this way, the precise spatio-temporal targeting and degradation of a given substrate can be achieved. The E3s are a large, diverse group of proteins, characterized by one of several defining motifs. These include a HECT (homologous to E6-associated protein C-terminus), RING (really interesting new gene) or U-box (a modified RING motif without the full complement of Zn2+-binding ligands) domain. Whereas HECT E3s have a direct role in catalysis during ubiquitination, RING and U-box E3s facilitate protein ubiquitination. These latter two E3 types act as adaptor-like molecules. They bring an E2 and a substrate into sufficiently close proximity to promote the substrate's ubiquitination. Although many RING-type E3s, such as MDM2 (murine double minute clone 2 oncoprotein) and c-Cbl, can apparently act alone, others are found as components of much larger multi-protein complexes, such as the anaphase-promoting complex. Taken together, these multifaceted properties and interactions enable E3s to provide a powerful, and specific, mechanism for protein clearance within all cells of eukaryotic organisms. The importance of E3s is highlighted by the number of normal cellular processes they regulate, and the number of diseases associated with their loss of function or inappropriate targeting.

Download Full-text

Elucidating cyclic AMP signaling in subcellular domains with optogenetic tools and fluorescent biosensors

Biochemical Society Transactions ◽

10.1042/bst20190246 ◽

2019 ◽

Vol 47 (6) ◽

pp. 1733-1747 ◽

Cited By ~ 3

Author(s):

Christina Klausen ◽

Fabian Kaiser ◽

Birthe Stüven ◽

Jan N. Hansen ◽

Dagmar Wachten

Keyword(s):

Cyclic Amp ◽

Adenosine Monophosphate ◽

Adenylyl Cyclases ◽

Temporal Precision ◽

Fluorescent Biosensors ◽

Subcellular Domains ◽

Spatio Temporal ◽

Hydrolysis Of ◽

Shed Light ◽

Cyclic Amp Signaling

The second messenger 3′,5′-cyclic nucleoside adenosine monophosphate (cAMP) plays a key role in signal transduction across prokaryotes and eukaryotes. Cyclic AMP signaling is compartmentalized into microdomains to fulfil specific functions. To define the function of cAMP within these microdomains, signaling needs to be analyzed with spatio-temporal precision. To this end, optogenetic approaches and genetically encoded fluorescent biosensors are particularly well suited. Synthesis and hydrolysis of cAMP can be directly manipulated by photoactivated adenylyl cyclases (PACs) and light-regulated phosphodiesterases (PDEs), respectively. In addition, many biosensors have been designed to spatially and temporarily resolve cAMP dynamics in the cell. This review provides an overview about optogenetic tools and biosensors to shed light on the subcellular organization of cAMP signaling.

Download Full-text