Open standard blade server systems enable high performance applications

Author(s):  
S. McClellan ◽  
K. Austin ◽  
A. Deikman
2011 ◽  
Vol 28 (1) ◽  
pp. 15-27 ◽  
Author(s):  
Christopher J. Fluke ◽  
David G. Barnes ◽  
Benjamin R. Barsdell ◽  
Amr H. Hassan

AbstractGeneral-purpose computing on graphics processing units (GPGPU) is dramatically changing the landscape of high performance computing in astronomy. In this paper, we identify and investigate several key decision areas, with a goal of simplifying the early adoption of GPGPU in astronomy. We consider the merits of OpenCL as an open standard in order to reduce risks associated with coding in a native, vendor-specific programming environment, and present a GPU programming philosophy based on using brute force solutions. We assert that effective use of new GPU-based supercomputing facilities will require a change in approach from astronomers. This will likely include improved programming training, an increased need for software development best practice through the use of profiling and related optimisation tools, and a greater reliance on third-party code libraries. As with any new technology, those willing to take the risks and make the investment of time and effort to become early adopters of GPGPU in astronomy, stand to reap great benefits.


2008 ◽  
Vol 47 (4) ◽  
pp. 621-640 ◽  
Author(s):  
W. E. Smith ◽  
K. S. Trivedi ◽  
L. A. Tomek ◽  
J. Ackaret

2006 ◽  
Vol 45 (1) ◽  
pp. 103-118 ◽  
Author(s):  
B. D'Amora ◽  
A. Nanda ◽  
K. Magerlein ◽  
A. Binstock ◽  
B. Yee

IEEE Micro ◽  
1997 ◽  
Vol 17 (6) ◽  
pp. 29-39 ◽  
Author(s):  
P. Gillingham ◽  
B. Vogley

BMC Genomics ◽  
2021 ◽  
Vol 22 (S5) ◽  
Author(s):  
Mansheng Li ◽  
Qiang He ◽  
Chunyuan Yang ◽  
Jie Ma ◽  
Fuchu He ◽  
...  

Abstract Background With the rapid increase in the amount of Protein-Protein Interaction (PPI) data, the establishment of an event-centered PPI ontology that contains temporal and spatial vocabularies is urgently needed to clarify PPI biological annotations. In this paper, we propose a precisely designed schema - PPIO (PPI Ontology) for representing the biological context of PPIs. Results Inspired by the event model and the distinct characteristics of PPI events, PPIO consists of six core aspects of the information required for reporting a PPI event, including the interactor (who), the biological process (when), the subcellular location (where), the interaction type (how), the biological function (what) and the detection method (which). PPIO is implemented through the integration of appropriate terms from the corresponding vocabularies/ontologies, e.g., Gene Ontology, Protein Ontology, PSI-MI/MOD, etc. To assess PPIO, an approach based on PPIO in developed to extract PPI biological annotations from an open standard corpus “BioCreAtIvE-PPI”. The experiment results demonstrate PPIO’s high performance, a precision of 0.69, a recall of 0.72 and an F-score of 0.70. Conclusions PPIO is a well-constructed essential ontology in the interpretation of PPI biological context. The results of the experiments conducted on the BioCreAtIvE corpus demonstrate that PPIO is able to facilitate PPI annotation extraction from biomedical literature effectively and enrich essential annotation for PPIs.


Electronics ◽  
2020 ◽  
Vol 9 (7) ◽  
pp. 1148
Author(s):  
Antonio F. Díaz ◽  
Ilia Blokhin ◽  
Mancia Anguita ◽  
Julio Ortega ◽  
Juan J. Escobar

Multifactor authentication is a relevant tool in securing IT infrastructures combining two or more credentials. We can find smartcards and hardware tokens to leverage the authentication process, but they have some limitations. Users connect these devices in the client node to log in or request access to services. Alternatively, if an application wants to use these resources, the code has to be amended with bespoke solutions to provide access. Thanks to advances in system-on-chip devices, we can integrate cryptographically robust, low-cost solutions. In this work, we present an autonomous device that allows multifactor authentication in client–server systems in a transparent way, which facilitates its integration in High-Performance Computing (HPC) and cloud systems, through a generic gateway. The proposed electronic token (eToken), based on the system-on-chip ESP32, provides an extra layer of security based on elliptic curve cryptography. Secure communications between elements use Message Queuing Telemetry Transport (MQTT) to facilitate their interconnection. We have evaluated different types of possible attacks and the impact on communications. The proposed system offers an efficient solution to increase security in access to services and systems.


Author(s):  
A. V. Crewe ◽  
M. Isaacson ◽  
D. Johnson

A double focusing magnetic spectrometer has been constructed for use with a field emission electron gun scanning microscope in order to study the electron energy loss mechanism in thin specimens. It is of the uniform field sector type with curved pole pieces. The shape of the pole pieces is determined by requiring that all particles be focused to a point at the image slit (point 1). The resultant shape gives perfect focusing in the median plane (Fig. 1) and first order focusing in the vertical plane (Fig. 2).


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