An approach for Personalized Continuous Glucose Prediction with Regression Trees

Author(s):  
Sotiris Alexiou ◽  
Elias Dritsas ◽  
Otilia Kocsis ◽  
Konstantinos Moustakas ◽  
Nikos Fakotakis
Diabetes ◽  
2018 ◽  
Vol 67 (Supplement 1) ◽  
pp. 948-P
Author(s):  
ANDREAS PFÜTZNER ◽  
FILIZ DEMIRCIK ◽  
ALEXANDER LIER ◽  
SANJA RAMLJAK

Author(s):  
Jiemin Xie ◽  
Jun Zhang ◽  
Xuan Xie ◽  
Zhiwei Bi ◽  
Zhuoheng Li

2021 ◽  
Vol 9 (7) ◽  
pp. 232596712110152
Author(s):  
Lucas G. Teske ◽  
Edward C. Beck ◽  
Garrett S. Bullock ◽  
Kristen F. Nicholson ◽  
Brian R. Waterman

Background: Although lower extremity biomechanics has been correlated with traditional metrics among baseball players, its association with advanced statistical metrics has not been evaluated. Purpose: To establish normative biomechanical parameters during the countermovement jump (CMJ) among Major League Baseball (MLB) players and evaluate the relationship between CMJ-developed algorithms and advanced statistical metrics. Study Design: Cohort study; Level of evidence, 3. Methods: MLB players in 2 professional organizations performed the CMJ at the beginning of each baseball season from 2013 to 2017. We collected ground-reaction force data including the eccentric rate of force development (“load”), concentric vertical force (“explode”), and concentric vertical impulse (“drive”) as well as the Sparta Score. The advanced statistical metrics from each baseball season (eg, fielding independent pitching [FIP], weighted stolen base runs [wSB], and weighted on-base average) were also gathered for the study participants. The minimal detectable change (MDC) was calculated for each CMJ variable to establish normative parameters. Pearson coefficient analysis and regression trees were used to evaluate associations between CMJ data and advanced statistical metrics for the players. Results: A total of 151 pitchers and 138 batters were included in the final analysis. The MDC for “load,” “explode,” “drive,” and the Sparta Score was 10.3, 8.1, 8.7, and 4.6, respectively, and all demonstrated good reliability (intraclass correlation coefficient > 0.75). There was a weak but statistically significant correlation between the Sparta Score and wSB ( r = 0.23; P = .007); however, there were no significant correlations with any other advanced metrics. Regression trees demonstrated superior FIP with higher Sparta Scores in older pitchers compared with younger pitchers. Conclusion: There was a positive but weak correlation between the Sparta Score and base-stealing performance among professional baseball players. Additionally, older pitchers with a higher Sparta Score had statistically superior FIP compared with younger pitchers with a similar Sparta Score after adjusting for age.


2020 ◽  
Vol 79 (Suppl 1) ◽  
pp. 1252.2-1253
Author(s):  
R. Garofoli ◽  
M. Resche-Rigon ◽  
M. Dougados ◽  
D. Van der Heijde ◽  
C. Roux ◽  
...  

Background:Axial spondyloarthritis (axSpA) is a chronic rheumatic disease that encompasses various clinical presentations: inflammatory chronic back pain, peripheral manifestations and extra-articular manifestations. The current nomenclature divides axSpA in radiographic (in the presence of radiographic sacroiliitis) and non-radiographic (in the absence of radiographic sacroiliitis, with or without MRI sacroiliitis. Given that the functional burden of the disease appears to be greater in patients with radiographic forms, it seems crucial to be able to predict which patients will be more likely to develop structural damage over time. Predictive factors for radiographic progression in axSpA have been identified through use of traditional statistical models like logistic regression. However, these models present some limitations. In order to overcome these limitations and to improve the predictive performance, machine learning (ML) methods have been developed.Objectives:To compare ML models to traditional models to predict radiographic progression in patients with early axSpA.Methods:Study design: prospective French multicentric cohort study (DESIR cohort) with 5years of follow-up. Patients: all patients included in the cohort, i.e. 708 patients with inflammatory back pain for >3 months but <3 years, highly suggestive of axSpA. Data on the first 5 years of follow-up was used. Statistical analyses: radiographic progression was defined as progression either at the spine (increase of at least 1 point per 2 years of mSASSS scores) or at the sacroiliac joint (worsening of at least one grade of the mNY score between 2 visits). Traditional modelling: we first performed a bivariate analysis between our outcome (radiographic progression) and explanatory variables at baseline to select the variables to be included in our models and then built a logistic regression model (M1). Variable selection for traditional models was performed with 2 different methods: stepwise selection based on Akaike Information Criterion (stepAIC) method (M2), and the Least Absolute Shrinkage and Selection Operator (LASSO) method (M3). We also performed sensitivity analysis on all patients with manual backward method (M4) after multiple imputation of missing data. Machine learning modelling: using the “SuperLearner” package on R, we modelled radiographic progression with stepAIC, LASSO, random forest, Discrete Bayesian Additive Regression Trees Samplers (DBARTS), Generalized Additive Models (GAM), multivariate adaptive polynomial spline regression (polymars), Recursive Partitioning And Regression Trees (RPART) and Super Learner. Finally, the accuracy of traditional and ML models was compared based on their 10-foldcross-validated AUC (cv-AUC).Results:10-fold cv-AUC for traditional models were 0.79 and 0.78 for M2 and M3, respectively. The 3 best models in the ML algorithm were the GAM, the DBARTS and the Super Learner models, with 10-fold cv-AUC of: 0.77, 0.76 and 0.74, respectively (Table 1).Table 1.Comparison of 10-fold cross-validated AUC between best traditional and machine learning models.Best modelsCross-validated AUCTraditional models M2 (step AIC method)0.79 M3 (LASSO method)0.78Machine learning approach SL Discrete Bayesian Additive Regression Trees Samplers (DBARTS)0.76 SL Generalized Additive Models (GAM)0.77 Super Learner0.74AUC: Area Under the Curve; AIC: Akaike Information Criterion; LASSO: Least Absolute Shrinkage and Selection Operator; SL: SuperLearner. N = 295.Conclusion:Traditional models predicted better radiographic progression than ML models in this early axSpA population. Further ML algorithms image-based or with other artificial intelligence methods (e.g. deep learning) might perform better than traditional models in this setting.Acknowledgments:Thanks to the French National Society of Rheumatology and the DESIR cohort.Disclosure of Interests:Romain Garofoli: None declared, Matthieu resche-rigon: None declared, Maxime Dougados Grant/research support from: AbbVie, Eli Lilly, Merck, Novartis, Pfizer and UCB Pharma, Consultant of: AbbVie, Eli Lilly, Merck, Novartis, Pfizer and UCB Pharma, Speakers bureau: AbbVie, Eli Lilly, Merck, Novartis, Pfizer and UCB Pharma, Désirée van der Heijde Consultant of: AbbVie, Amgen, Astellas, AstraZeneca, BMS, Boehringer Ingelheim, Celgene, Cyxone, Daiichi, Eisai, Eli-Lilly, Galapagos, Gilead Sciences, Inc., Glaxo-Smith-Kline, Janssen, Merck, Novartis, Pfizer, Regeneron, Roche, Sanofi, Takeda, UCB Pharma; Director of Imaging Rheumatology BV, Christian Roux: None declared, Anna Moltó Grant/research support from: Pfizer, UCB, Consultant of: Abbvie, BMS, MSD, Novartis, Pfizer, UCB


2021 ◽  
Vol 13 (7) ◽  
pp. 3870
Author(s):  
Mehrbakhsh Nilashi ◽  
Shahla Asadi ◽  
Rabab Ali Abumalloh ◽  
Sarminah Samad ◽  
Fahad Ghabban ◽  
...  

This study aims to develop a new approach based on machine learning techniques to assess sustainability performance. Two main dimensions of sustainability, ecological sustainability, and human sustainability, were considered in this study. A set of sustainability indicators was used, and the research method in this study was developed using cluster analysis and prediction learning techniques. A Self-Organizing Map (SOM) was applied for data clustering, while Classification and Regression Trees (CART) were applied to assess sustainability performance. The proposed method was evaluated through Sustainability Assessment by Fuzzy Evaluation (SAFE) dataset, which comprises various indicators of sustainability performance in 128 countries. Eight clusters from the data were found through the SOM clustering technique. A prediction model was found in each cluster through the CART technique. In addition, an ensemble of CART was constructed in each cluster of SOM to increase the prediction accuracy of CART. All prediction models were assessed through the adjusted coefficient of determination approach. The results demonstrated that the prediction accuracy values were high in all CART models. The results indicated that the method developed by ensembles of CART and clustering provide higher prediction accuracy than individual CART models. The main advantage of integrating the proposed method is its ability to automate decision rules from big data for prediction models. The method proposed in this study could be implemented as an effective tool for sustainability performance assessment.


2021 ◽  
pp. 193229682110182
Author(s):  
Aaron P. Tucker ◽  
Arthur G. Erdman ◽  
Pamela J. Schreiner ◽  
Sisi Ma ◽  
Lisa S. Chow

Successful measurements of interstitial glucose are a key component in providing effective care for patients with diabetes. Recently, there has been significant interest in using neural networks to forecast future glucose values from interstitial measurements collected by continuous glucose monitors (CGMs). While prediction accuracy continues to improve, in this work we investigated the effect of physiological sensor location on neural network blood glucose forecasting. We used clinical data from patients with Type 2 Diabetes who wore blinded FreeStyle Libre Pro CGMs (Abbott) on both their right and left arms continuously for 12 weeks. We trained patient-specific prediction algorithms to test the effect of sensor location on neural network forecasting ( N = 13, Female = 6, Male = 7). In 10 of our 13 patients, we found at least one significant ( P < .05) increase in forecasting error in algorithms which were tested with data taken from a different location than data which was used for training. These reported results were independent from other noticeable physiological differences between subjects (eg, height, age, weight, blood pressure) and independent from overall variance in the data. From these results we observe that CGM location can play a consequential role in neural network glucose prediction.


2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Brinnae Bent ◽  
Peter J. Cho ◽  
Maria Henriquez ◽  
April Wittmann ◽  
Connie Thacker ◽  
...  

AbstractPrediabetes affects one in three people and has a 10% annual conversion rate to type 2 diabetes without lifestyle or medical interventions. Management of glycemic health is essential to prevent progression to type 2 diabetes. However, there is currently no commercially-available and noninvasive method for monitoring glycemic health to aid in self-management of prediabetes. There is a critical need for innovative, practical strategies to improve monitoring and management of glycemic health. In this study, using a dataset of 25,000 simultaneous interstitial glucose and noninvasive wearable smartwatch measurements, we demonstrated the feasibility of using noninvasive and widely accessible methods, including smartwatches and food logs recorded over 10 days, to continuously detect personalized glucose deviations and to predict the exact interstitial glucose value in real time with up to 84% and 87% accuracy, respectively. We also establish methods for designing variables using data-driven and domain-driven methods from noninvasive wearables toward interstitial glucose prediction.


2021 ◽  
pp. 175045892096263
Author(s):  
Margaret O Lewen ◽  
Jay Berry ◽  
Connor Johnson ◽  
Rachael Grace ◽  
Laurie Glader ◽  
...  

Aim To assess the relationship of preoperative hematology laboratory results with intraoperative estimated blood loss and transfusion volumes during posterior spinal fusion for pediatric neuromuscular scoliosis. Methods Retrospective chart review of 179 children with neuromuscular scoliosis undergoing spinal fusion at a tertiary children’s hospital between 2012 and 2017. The main outcome measure was estimated blood loss. Secondary outcomes were volumes of packed red blood cells, fresh frozen plasma, and platelets transfused intraoperatively. Independent variables were preoperative blood counts, coagulation studies, and demographic and surgical characteristics. Relationships between estimated blood loss, transfusion volumes, and independent variables were assessed using bivariable analyses. Classification and Regression Trees were used to identify variables most strongly correlated with outcomes. Results In bivariable analyses, increased estimated blood loss was significantly associated with higher preoperative hematocrit and lower preoperative platelet count but not with abnormal coagulation studies. Preoperative laboratory results were not associated with intraoperative transfusion volumes. In Classification and Regression Trees analysis, binary splits associated with the largest increase in estimated blood loss were hematocrit ≥44% vs. <44% and platelets ≥308 vs. <308 × 109/L. Conclusions Preoperative blood counts may identify patients at risk of increased bleeding, though do not predict intraoperative transfusion requirements. Abnormal coagulation studies often prompted preoperative intervention but were not associated with increased intraoperative bleeding or transfusion needs.


2021 ◽  
Vol 13 (12) ◽  
pp. 2300
Author(s):  
Samy Elmahdy ◽  
Tarig Ali ◽  
Mohamed Mohamed

Mapping of groundwater potential in remote arid and semi-arid regions underneath sand sheets over a very regional scale is a challenge and requires an accurate classifier. The Classification and Regression Trees (CART) model is a robust machine learning classifier used in groundwater potential mapping over a very regional scale. Ten essential groundwater conditioning factors (GWCFs) were constructed using remote sensing data. The spatial relationship between these conditioning factors and the observed groundwater wells locations was optimized and identified by using the chi-square method. A total of 185 groundwater well locations were randomly divided into 129 (70%) for training the model and 56 (30%) for validation. The model was applied for groundwater potential mapping by using optimal parameters values for additive trees were 186, the value for the learning rate was 0.1, and the maximum size of the tree was five. The validation result demonstrated that the area under the curve (AUC) of the CART was 0.920, which represents a predictive accuracy of 92%. The resulting map demonstrated that the depressions of Mondafan, Khujaymah and Wajid Mutaridah depression and the southern gulf salt basin (SGSB) near Saudi Arabia, Oman and the United Arab Emirates (UAE) borders reserve fresh fossil groundwater as indicated from the observed lakes and recovered paleolakes. The proposed model and the new maps are effective at enhancing the mapping of groundwater potential over a very regional scale obtained using machine learning algorithms, which are used rarely in the literature and can be applied to the Sahara and the Kalahari Desert.


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