scholarly journals Long‐term progression of inbreeding depression in a Mediterranean ornithophilous shrub

2021 ◽  
Author(s):  
Francisco Javier Valtueña ◽  
Tomás Rodríguez‐Riaño ◽  
José Luis Pérez‐Bote ◽  
Josefa López ◽  
Ana Ortega‐Olivencia
Keyword(s):  
Inbreeding Depression

scholarly journals Selection Response in Finite Populations

Genetics ◽  
1996 ◽  
Vol 144 (4) ◽  
pp. 1961-1974 ◽  
Author(s):  
Ming Wei ◽  
Armando Caballero ◽  
William G Hill
Keyword(s):  
Linkage Disequilibrium ◽  
Inbreeding Depression ◽  
Genetic Variance ◽  
Relative Rate ◽  
Selection Response ◽  
Rate Of Change ◽  
Effective Population ◽  
Short Term ◽  
Model Account

Formulae were derived to predict genetic response under various selection schemes assuming an infinitesimal model. Account was taken of genetic drift, gametic (linkage) disequilibrium (Bulmer effect), inbreeding depression, common environmental variance, and both initial segregating variance within families (σAW02) and mutational (σM2) variance. The cumulative response to selection until generation t(CRt) can be approximated asCRt≈R0[t−β(1−σAW∞2σAW02)t24Ne]−Dt2Ne,where Ne is the effective population size, σAW∞2=NeσM2 is the genetic variance within families at the steady state (or one-half the genic variance, which is unaffected by selection), and D is the inbreeding depression per unit of inbreeding. R  0 is the selection response at generation 0 assuming preselection so that the linkage disequilibrium effect has stabilized. β is the derivative of the logarithm of the asymptotic response with respect to the logarithm of the within-family genetic variance, i.e., their relative rate of change. R  0 is the major determinant of the short term selection response, but σM2, Ne and β are also important for the long term. A selection method of high accuracy using family information gives a small Ne and will lead to a larger response in the short term and a smaller response in the long term, utilizing mutation less efficiently.

Heterozygosity-Fitness Correlations in a Continental Island Population of Thorn-Tailed Rayadito

2020 ◽  
Author(s):  
Esteban Botero-Delgadillo ◽  
Verónica Quirici ◽  
Rodrigo A Vásquez ◽  
Bart Kempenaers
Keyword(s):  
Inbreeding Depression ◽  
Nonlinear Effects ◽  
Molecular Techniques ◽  
Laying Date ◽  
Island Population ◽  
Apparent Survival ◽  
Linear Effect ◽  
Fledging Success ◽  
Gradual Process

Abstract Heterozygosity-fitness correlations (HFCs) have been used to monitor the effects of inbreeding in threatened populations. HFCs can also be useful to investigate the potential effects of inbreeding in isolated relict populations of long-term persistence and to better understand the role of inbreeding and outbreeding as drivers of changes in genetic diversity. We studied a continental island population of thorn-tailed rayadito (Aphrastura spinicauda) inhabiting the relict forest of Fray Jorge National Park, north-central Chile. This population has experienced a long-term, gradual process of isolation since the end of the Tertiary. Using 10 years of field data in combination with molecular techniques, we tested for HFCs to assess the importance of inbreeding depression. If inbreeding depression is important, we predict a positive relationship between individual heterozygosity and fitness-related traits. We genotyped 183 individuals at 12 polymorphic microsatellite loci and used 7 measures of reproductive success and estimates of apparent survival to calculate HFCs. We found weak to moderate statistical support (P-values between 0.05 and 0.01) for a linear effect of female multi-locus heterozygosity (MLH) on clutch size and nonlinear effects on laying date and fledging success. While more heterozygous females laid smaller clutches, nonlinear effects indicated that females with intermediate values of MLH started laying earlier and had higher fledging success. We found no evidence for effects of MLH on annual fecundity or on apparent survival. Our results along with the long-term demographic stability of the study population contradict the hypothesis that inbreeding depression occurs in this population.

scholarly journals Detecting inbreeding depression in a severely bottlenecked, recovering species: The little spotted kiwi (Apteryx owenii)

2021 ◽  
Author(s):  
◽  
Helen R. Taylor
Keyword(s):  
Genetic Variation ◽  
Population Growth ◽  
Inbreeding Depression ◽  
Hatching Success ◽  
Extinction Risk ◽  
Long Island ◽  
Island Population ◽  
Valuable Insight ◽  
Inbreeding Coefficients

<p>Population bottlenecks reduce genetic variation and population size. Small populations are at greater risk of inbreeding, which further erodes genetic diversity and can lead to inbreeding depression. Inbreeding depression is known to increase extinction risk. Thus, detecting inbreeding depression is important for population viability assessment and conservation management. However, identifying inbreeding depression in wild populations is challenging due to the difficulty of obtaining long-term measures of fitness and error-free measures of individual inbreeding coefficients. I investigated inbreeding depression and our power to detect it in species that have very low genetic variation, using little spotted kiwi (Apteryx owenii) (LSK) as a case study. This endemic New Zealand ratite experienced a bottleneck of, at most, five individuals ~100 years ago and has since been subjected to secondary bottlenecks as a result of introductions to new predator-free locations. There is no behavioural pedigree data available for any LSK population and the status of the species is monitored almost exclusively via population growth. I conducted two seasons of field work to determine hatching success in the two LSK populations with the highest and lowest numbers of founders; Zealandia Sanctuary (40 founders) and Long Island (two founders). I also used simulation-based modelling to assess the feasibility of reconstructing pedigrees based on individual genotypes from LSK populations to calculate pedigree inbreeding coefficients. Finally, I used microsatellite genotypes to measure the genetic erosion in successive filial groupings of Long Island and Zealandia LSK as a result of their respective bottlenecks, and tested for inbreeding depression on Long Island. Hatching success was significantly lower on Long Island than in Zealandia in both years of the study despite significantly higher reproductive effort on Long Island. Although this was suggestive of inbreeding depression on Long Island, simulation results showed that constructing a pedigree for any LSK population based on the genetic markers and samples currently available would lead to inaccurate pedigrees and invalid estimates of individual inbreeding coefficients. Thus, an alternative method of detecting inbreeding and inbreeding depression was required. Microsatellite data showed continued loss of heterozygosity in both populations, but loss of allelic diversity on Long Island only. Individual genotypes indicated that the majority (74%) of the adult Long Island population is comprised of the founding pair (F) and their direct offspring (F1) rather than birds from subsequent generations (F2+). This is not what would be expected if survival was equal between these two filial classes. I suggest that the high levels of inbreeding (≥0.25) in F2+ birds is impacting on their survival, creating a demographic skew in the population and resulting in lower hatching success on average on Long Island when compared to the relatively outbred Zealandia birds. This inbreeding depression appears to have been masked, thus far, by positive population growth on Long Island resulting from the long life span of LSK (27-83 years) and continued reproductive success of the founding pair. Thus, it is likely that the Long Island population will go into decline when the founding pair cease to reproduce. This study highlights the challenges of measuring inbreeding depression in species with very low genetic variation and the importance of assessing the statistical power and reliability of the genetic tools available for those species. It also demonstrates that basic genetic techniques can offer valuable insight when more advanced tools prove error-prone. Monitoring vital rates such as hatching success in conjunction with genetic data is important for assessing the success of conservation translocations and detecting potentially cryptic genetic threats such as inbreeding depression. My results suggest that LSK are being affected by inbreeding depression and that careful genetic management will be required to ensure the long-term viability of this species.</p>

scholarly journals Effect of partial selfing and polygenic selection on establishment in a new habitat

2019 ◽  
Author(s):  
Himani Sachdeva
Keyword(s):  
Inbreeding Depression ◽  
Evolutionary Dynamics ◽  
High Rate ◽  
Source Population ◽  
Selfing Rate ◽  
Deleterious Alleles ◽  
Wide Range ◽  
Mate Limitation ◽  
Polygenic Selection

AbstractThis paper analyzes how partial selfing in a large source population influences its ability to colonize a new habitat via the introduction of a few founder individuals. Founders experience inbreeding depression due to partially recessive deleterious alleles as well as maladaptation to the new environment due to selection on a large number of additive loci. I first introduce a simplified version of the Inbreeding History Model (Kelly, 2007) in order to characterize mutation-selection balance in a large, partially selfing source population under selection involving multiple non-identical loci. I then use individual-based simulations to study the eco-evolutionary dynamics of founders establishing in the new habitat under a model of hard selection. The study explores how selfing rate shapes establishment probabilities of founders via effects on both inbreeding depression and adaptability to the new environment, and also distinguishes the effects of selfing on the initial fitness of founders from its effects on the long-term adaptive response of the populations they found. A high rate of (but not complete) selfing is found to aid establishment over a wide range of parameters, even in the absence of mate limitation. The sensitivity of the results to assumptions about the nature of polygenic selection are discussed.

scholarly journals Eco-evolutionary dynamics of prior selfing rate promotes the coexistence without niche partitioning under reproductive interference

2020 ◽  
Author(s):  
Koki R. Katsuhara ◽  
Yuuya Tachiki ◽  
Ryosuke Iritani ◽  
Atushi Ushimaru
Keyword(s):  
Population Density ◽  
Plant Species ◽  
Inbreeding Depression ◽  
Evolutionary Dynamics ◽  
Niche Partitioning ◽  
Reproductive Interference ◽  
List Type ◽  
Selfing Rate ◽  
Evolutionary Rescue

AbstractWhen the two or more plants species share the same pollinators, pollinator-mediated reproductive interference make coexistence difficult. Recent studies suggested prior autonomous selfing mitigate reproductive interference, could enabling coexistence without pollination niche partitioning (pre-emptive selfing hypothesis). However, there are no studies to test whether evolution of prior selfing promote the coexistence, considering eco-evolutionary dynamics of population size, selfing rate and inbreeding depression.To examine conditions that the evolution of prior selfing promote coexistence under mutual reproductive interference especially in the point of view for pollinator availability and dynamics of inbreeding depression, we constructed individual-based model in which two plant species compete against each other in the form of mutual reproductive interference and can evolve prior autonomous selfing rate. We expected that purging of deleterious mutations could cause evolutionary rescue because inferior species could rescue population density through the evolution of prior selfing if the strength of inbreeding depression decreases with an increase of population’s selfing rate.Our simulation demonstrated that the evolution of prior selfing could promote the coexistence while reproductive interference caused competitive exclusion without evolution. We found that lower pollinator availability tended to prefer rapid evolutionary shift to higher prior selfing rate, it neutralizes the negative effect of reproductive interference, and population dynamics exhibit neutral random walk in both species. When the strength of inbreeding depression decreased with an increase in population’s selfing rate, moderate pollinator availability resulted in long-term coexistence in which relative-abundance-dependent selection on the prior selfing rate rescue population density of inferior species intermittently.Synthesis. We showed that the evolution of prior selfing could increase population growth rate of inferior species and consequently enable the long-term coexistence with evolutionary rescue. This is the new mechanisms explaining co-evolutionary coexistence of closely related plant species without niche partitioning and consistent with recent studies reported that closely related mixed-mating species are sympatrically growing even under the mutual reproductive interference.

scholarly journals POPULATION SIZE AND SELECTION INTENSITY EFFECTS ON LONG-TERM SELECTION RESPONSE IN MICE

Genetics ◽  
1975 ◽  
Vol 79 (2) ◽  
pp. 305-323
Author(s):  
E J Eisen
Keyword(s):  
Inbreeding Depression ◽  
Genetic Correlations ◽  
Selection Response ◽  
Second Phase ◽  
Selection Intensity ◽  
Total Response ◽  
Family Selection ◽  
Effective Population ◽  
The Difference

ABSTRACT Long-term response to within full-sib family selection for increased postweaning gain was evaluated in lines having different effective population sizes (Ne) and selection intensities (i). Line designations were I4(4), I8(2), I16(2), M4(4), M8(2) and M16(2), where I and M indicate selection of the top 50% and 25%, respectively; 4, 8 and 16 represent the number of parental pairs per replicate and number of replicates is given in parentheses. Realized within full-sib family heritabilities (hR  2) in the first phase of selection (0-14 generations) were larger in 16-pair lines than in 4- and 8-pair lines. In the second phase of selection (&gt;14 generations), hR  2 declined significantly (P&lt;.01) in all lines, and only the I16 and M16 lines had hR  2 values significantly (P&lt;.01) greater than zero. Realized genetic correlations involving number born, 12-day litter weight, weaning weight and six-week weight tended to decline in the second phase of selection. The I16, M16 and control (C16) replicates were crossed in all combinations at generation 14. Crosses were then selected within litters for high postweaning gain. The hR  2 values in the crossbred lines were all larger than those in the second selection phase for M16-1, M16-2 and I16-1, but not for I16-2. Within each Ne level, total response was significantly (P&lt;.01) less for I lines compared with M lines. Total response increased as Ne increased, within each level of i. Relatively small differences in realized i values among Ne lines could not account for this result. The difference in total response among the Ne lines at a given selection intensity may be due to inbreeding depression and a combination of interactions involving "drift" and selection. By crossing replicates of the M lines with the C16 control, the effects of inbreeding depression were removed. Inbreeding depression and genetic drift, as defined herein, were equally important in accounting for differences among Ne lines in total response.

scholarly journals Mutation load decreases with haplotype age in wild Soay sheep

2021 ◽  
Author(s):  
M.A. Stoffel ◽  
S.E. Johnston ◽  
J.G. Pilkington ◽  
J.M Pemberton
Keyword(s):  
Inbreeding Depression ◽  
Purifying Selection ◽  
Small Population ◽  
First Year ◽  
Mutation Load ◽  
Soay Sheep ◽  
Recessive Mutations ◽  
Deleterious Alleles ◽  
Lower Population

AbstractRuns of homozygosity (ROH) are pervasive in diploid genomes and expose the effects of deleterious recessive mutations, but how exactly these regions contribute to variation in fitness remains unclear. Here, we combined empirical analyses and simulations to explore the deleterious effects of ROH with varying genetic map lengths in wild Soay sheep. Using a long-term dataset of 4,592 individuals genotyped at 417K SNPs, we found that inbreeding depression increases with ROH length. A 1% genomic increase in long ROH (>12.5cM) reduced the odds of first-year survival by 12%, compared to only 7% for medium ROH (1.56-12.5cM), while short ROH (<1.56cM) had no effect on survival. We show by forward genetic simulations that this is predicted: compared with shorter ROH, long ROH will have higher densities of deleterious alleles, with larger average effects on fitness and lower population frequencies. Taken together, our results are consistent with the idea that the mutation load decreases in older haplotypes underlying shorter ROH, where purifying selection has had more time to purge deleterious mutations. Finally, our study demonstrates that strong inbreeding depression can persist despite ongoing purging in a historically small population.

scholarly journals Analysis of inbreeding depression in the first litter size of mice in a long-term selection experiment with respect to the age of the inbreeding

Heredity ◽  
2007 ◽  
Vol 99 (1) ◽  
pp. 81-88 ◽  
Author(s):  
D Hinrichs ◽  
T H E Meuwissen ◽  
J Ødegard ◽  
M Holt ◽  
O Vangen ◽  
...  
Keyword(s):  
Litter Size ◽  
Inbreeding Depression ◽  
Selection Experiment ◽  
Term Selection

scholarly journals Reproductive system of a mixed-mating plant responds to climate perturbation by increased selfing

2013 ◽  
Vol 280 (1766) ◽  
pp. 20131336 ◽  
Author(s):  
N. T. Jones ◽  
B. C. Husband ◽  
A. S. MacDougall
Keyword(s):  
Population Structure ◽  
Environmental Change ◽  
Inbreeding Depression ◽  
Reproductive System ◽  
Fruit Production ◽  
Mixed Mating ◽  
Reproductive Assurance ◽  
Pollinator Visitation ◽  
Chasmogamous Flowers

How plants respond to climatic perturbations, which are forecasted to increase in frequency and intensity, is difficult to predict because of the buffering effects of plasticity. Compensatory adjustments may maintain fecundity and recruitment, or delay negative changes that are inevitable but not immediately evident. We imposed a climate perturbation of warming and drought on a mixed-mating perennial violet, testing for adjustments in growth, reproduction and mortality. We observed several plasticity-based buffering responses, such that the climatic perturbation did not alter population structure. The most substantial reproductive adjustments, however, involved selfing, with a 45% increase in self-pollination by chasmogamous flowers, a 61% increase in the number of cleistogamous flowers that produced at least one fruit and an overall 15% increase in fruit production from selfed cleistogamous flowers. Reproductive assurance thus compensated for environmental change, including low pollinator visitation that occurred independently of our climate treatment. There was also no immediate evidence for inbreeding depression. Our work indicates that plants with vegetative and reproductive flexibility may not be immediately and negatively affected by a climatic perturbation. The stabilizing effects of these reproductive responses in the long term, however, may depend on the implications of significantly elevated levels of selfing.

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