scholarly journals Landscape genomics of an obligate mutualism: Concordant and discordant population structures between the leafcutter antAtta texanaand its two main fungal symbiont types

2019 ◽  
Author(s):  
Chad C. Smith ◽  
Jesse N. Weber ◽  
Alexander S. Mikheyev ◽  
Flavio Roces ◽  
Martin Bollazzi ◽  
...  
Keyword(s):  
Fungal Symbiont ◽  
Landscape Genomics ◽  
Population Structures ◽  
Obligate Mutualism

scholarly journals Landscape genomics of an obligate mutualism: discordant population structures between a leafcutter-ant and its fungal cultivars

2018 ◽  
Author(s):  
Chad C. Smith ◽  
Jesse N. Weber ◽  
Alexander S. Mikheyev ◽  
Flavio Roces ◽  
Martin Bollazzi ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Gene Flow ◽  
Genetic Structure ◽  
Abiotic Factors ◽  
Genotyping By Sequencing ◽  
Range Limit ◽  
Range Margin ◽  
Landscape Genomics ◽  
Temperature And Precipitation ◽  
Obligate Mutualism

AbstractTo explore landscape genomics at the range limit of an obligate mutualism, we used genotyping-by-sequencing (ddRADseq) to quantify population structure and the effect of hostsymbiont interactions between the northernmost fungus-farming leafcutter ant Atta texana and its two main types of cultivated fungus. At local scales, genome-wide differentiation between ants associated with either of the two fungal types is greater than the differentiation associated with the abiotic factors temperature and precipitation, suggesting that specific ant-fungus genome-genome combinations may have been favored by selection. For the ant hosts, we found a broad cline of genetic structure across the range, and a reduction of genetic diversity along the axis of range expansion towards the range margin. In contrast, genetic structure was patchy in the cultivated fungi, with no consistent reduction of fungal genetic diversity at the range margins. This discordance in population-genetic structure between ant hosts and fungal symbionts is surprising because the ant farmers co-disperse with their vertically-transmitted fungal symbionts, but apparently the fungi disperse occasionally also through between-nest horizontal transfer or other unknown dispersal mechanisms. The discordance in populationgenetic structure indicates that genetic drift and gene flow differ in magnitude between each partner in this leafcutter mutualism. Together, these findings imply that variation in the strength of drift and gene flow experienced by each mutualistic partner affects adaptation to environmental stress at the range margin, and genome-genome interactions between host and symbiont influences adaptive genetic differentiation of the host during range evolution in this obligate mutualism.

Türkiye'de iller arası göçlerin nodexl ile sosyal ağ analizi

2017 ◽  
Vol 4 (1) ◽  
pp. 82-109 ◽  
Author(s):  
Mustafa Yakar ◽  
Fatma Sert Eteman
Keyword(s):  
Network Structure ◽  
Population Data ◽  
Single Mode ◽  
Turkish Population ◽  
Place Of Birth ◽  
Place Of Residence ◽  
Migration Flow ◽  
Population Structures ◽  
The Republic ◽  
Provincial Scale

Türkiye'de 20.yy'ın ortasından itibaren başlayan iç göçler zamanla kurulan göçmen ağları ile süreklilik kazanmış ve ülke içinde nüfusun kır-kent dağılımını değiştirecek boyutlara erişmiştir. Araştırma, göçün doğum yeri verisinden hareketle ikamet edilen yerdeki nüfus miktarına göre alınan ve verilen göç akışının büyüklüğünü iller ölçeğinde yönlü ağlar kullanılarak analiz edilmesini amaçlamaktadır. Araştırmada, TÜİK tarafından yayınlanmış olan 2015 yılına ait, iller ölçeğinde doğum yerine göre ikamet yeri verisi kullanılmıştır. Göçün kaynak ve hedef sahaları arasındaki akışını incelemek için NodeXL ile oluşturulan tek modlu, yönlü ve ağırlıklandırılmış göç ağının istatistiksel olarak tam ağ yapısına sahip olduğu görülmüştür. Ağ grafiklerinden ve istatistiklerinden göç hareketinin doğudan batıya doğru gerçekleştiği ve İstanbul’ un ülkenin tamamına hâkim bir görünüme sahip olduğu anlaşılmaktadır. Türkiye nüfusunun cumhuriyet tarihi içinde geçirdiği iç göç süreçleriyle birlikte ülke içinde kurulmuş ve oldukça karmaşık bir görünüme sahip ağ yapısının olduğu ileri sürülebilir. Kurulan ağlar göçlerin devamını sağladığı gibi, göçün yöneldiği merkezlerde daha heterojen nüfus yapılarının ortaya çıkmasına yol açmıştır.ABSTRACT IN ENGLISHSocial Network Analysis of Migration Inter Provinces In Turkey with Nodexl The internal migrations which started in Turkey in the middle of the 20th century have gained permanency with the migration networks that were established at the time and reached dimensions which have the potential to change the rural-urban distribution of the population within the country.  The study aims to analyze the magnitude of the incoming and outgoing migration flow at the provincial scale based on the population data for place of birth according to place of residence by using directional networks. Place of residence according to place of birth at the provincial scale data for 2015 published by TÜİK was used in the study. A single mode, directional and weighted migration network created with NodeXL to examine the migration flows between the source and target has a statistically complete network structure. The network graphs and statistics show that the migrations have taken place from east to west and Istanbul has a view as dominant of the country. It can be argued that internal network structure of Turkish population has  a very complex view because of internal migration in the history of the republic. The established networks have enabled the continuation of migration and have manifested as the emergence of more heterogeneous population structures in centers where migration had been directed.

Genetic Population Structures Based on the Coi Gene of Bassaniodes pseudorectilineus (Araneae: Thomisidae)

2020 ◽  
Vol 129 (3) ◽  
Author(s):  
Adile Akpınar ◽  
Rufana Mammadova
Keyword(s):  
Coi Gene ◽  
Genetic Population ◽  
Population Structures

Surnames and population structure in the Doctrine of Belén, Altos de Arica, Viceroyalty of Peru (1750–1813)

2021 ◽  
pp. 1-13
Author(s):  
Emma Alfaro ◽  
Xochitl Inostroza ◽  
José E. Dipierri ◽  
Daniela Peña Aguilera ◽  
Jorge Hidalgo ◽  
...  
Keyword(s):  
Population Structure ◽  
Indigenous Population ◽  
Random Mating ◽  
Quantitative Information ◽  
Geographic Space ◽  
Documentary Sources ◽  
Cultural Variables ◽  
The Social ◽  
Population Structures ◽  
And Migration

Abstract The analysis of multiple population structures (biodemographic, genetic and socio-cultural) and their inter-relations contribute to a deeper understanding of population structure and population dynamics. Genetically, the population structure corresponds to the deviation of random mating conditioned by a limited number of ancestors, by restricted migration in the social or geographic space, or by preference for certain consanguineous unions. Through the isonymic method, surname frequency and distribution across the population can supply quantitative information on the structure of a human population, as they constitute universal socio-cultural variables. Using documentary sources to undertake the Doctrine of Belén’s (Altos de Arica, Chile) historical demography reconstruction between 1763 and 1820, this study identified an indigenous population with stable patronymics. The availability of complete marriage, baptism and death records, low rates of migration and the significant percentage of individuals registered and constantly present in this population favoured the application of the isonymic method. The aim of this work was to use given names and surnames recorded in these documentary sources to reconstruct the population structure and migration pattern of the Doctrine of Belén between 1750 and 1813 through the isonymic method. The results of the study were consistent with the ethno-historical data of this ethnic space, where social cohesion was, in multiple ways, related to the regulation of daily life in colonial Andean societies.

scholarly journals Genetic Diversity and Population Structures in Chinese Miniature Pigs Revealed by SINE Retrotransposon Insertion Polymorphisms, a New Type of Genetic Markers

Animals ◽  
2021 ◽  
Vol 11 (4) ◽  
pp. 1136
Author(s):  
Cai Chen ◽  
Xiaoyan Wang ◽  
Wencheng Zong ◽  
Enrico D’Alessandro ◽  
Domenico Giosa ◽  
...  
Keyword(s):  
Genetic Analysis ◽  
Genetic Markers ◽  
Structure Analysis ◽  
Genetic Distances ◽  
Population Genetic Analysis ◽  
Miniature Pigs ◽  
Population Structure Analysis ◽  
Information Contents ◽  
Population Structures ◽  
New Type

RIPs have been developed as effective genetic markers and popularly applied for genetic analysis in plants, but few reports are available for domestic animals. Here, we established 30 new molecular markers based on the SINE RIPs, and applied them for population genetic analysis in seven Chinese miniature pigs. The data revealed that the closed herd (BM-clo), inbreeding herd (BM-inb) of Bama miniature pigs were distinctly different from the BM-cov herds in the conservation farm, and other miniature pigs (Wuzhishan, Congjiang Xiang, Tibetan, and Mingguang small ear). These later five miniature pig breeds can further be classified into two clades based on a phylogenetic tree: one included BM-cov and Wuzhishan, the other included Congjiang Xiang, Tibetan, and Mingguang small ear, which was well-supported by structure analysis. The polymorphic information contents estimated by using SINE RIPs are lower than the predictions based on microsatellites. Overall, the genetic distances and breed-relationships between these populations revealed by 30 SINE RIPs generally agree with their evolutions and geographic distributions. We demonstrated the potential of SINE RIPs as new genetic markers for genetic monitoring and population structure analysis in pigs, which can even be extended to other livestock animals.

scholarly journals Patterns of intraspecific morphological variability in soil mites reflect their dispersal ability

2021 ◽  
Vol 83 (2) ◽  
pp. 241-255
Author(s):  
Julia Baumann
Keyword(s):  
Molecular Genetic ◽  
Morphological Variability ◽  
Mite Species ◽  
Molecular Genetic Analysis ◽  
Dispersal Ability ◽  
Geometric Morphometric ◽  
Geographic Population ◽  
Mobile Species ◽  
Population Structures ◽  
Subdivided Populations

AbstractThe ability to disperse is one of the most important factors influencing the biogeography of species and speciation processes. Highly mobile species have been shown to lack geographic population structures, whereas less mobile species show genetically strongly subdivided populations which are expected to also display at least subtle phenotypic differences. Geometric morphometric methods (GMM) were now used to analyze morphological differences between European populations of a presumed non-phoretic, little mobile mite species in comparison to a highly mobile, phoretic species. The non-phoretic species Scutacarus carinthiacus showed a phenotypic population structure, whereas the phoretic species S. acarorum displayed homogeneity. These different patterns most probably can be explained by different levels of gene flow due to different dispersal abilities of the two species. GMM proved to be a sensitive tool that is especially recommendable for the analysis of (old) museum material and/or specimens in microscopic slides, which are not suitable for molecular genetic analysis.

Landscape genomics and selection signatures of local adaptation of Eritrean indigenous cattle along environmental gradients

2021 ◽  
Vol 53 (4) ◽  
Author(s):  
S. Goitom ◽  
Mathew G. Gicheha ◽  
Francis K. Njonge ◽  
Ngeno Kiplangat
Keyword(s):  
Local Adaptation ◽  
Environmental Gradients ◽  
Selection Signatures ◽  
Indigenous Cattle ◽  
Landscape Genomics

The evolution of obligate mutualism: if you can’t beat ’em, join ’em

2007 ◽  
Vol 22 (10) ◽  
pp. 506-509 ◽  
Author(s):  
Duur K. Aanen ◽  
Rolf F. Hoekstra
Keyword(s):  
Obligate Mutualism
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