scholarly journals Complete Genome Sequences of Six Human Bocavirus Strains from Patients with Acute Gastroenteritis in the North Region of Brazil

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Aripuanã Sakurada Aranha Watanabe ◽  
Adriana Luchs ◽  
Élcio Leal ◽  
Flavio Augusto de Pádua Milagres ◽  
Shirley Vasconcelos Komninakis ◽  
...  

ABSTRACT Human bocavirus (HBoV) is commonly associated with acute respiratory tract illness and gastroenteritis. We report six complete genomic sequences of HBoV strains from patients with gastroenteritis in Belém do Pará and Tocantins in the North Region of Brazil. Phylogenetic analysis indicated that the six HBoV strains belong to genotypes 1, 2, and 3.

2020 ◽  
Vol 9 (13) ◽  
Author(s):  
Thao D. Tran ◽  
Steven Huynh ◽  
Craig T. Parker ◽  
Robert Hnasko ◽  
Lisa Gorski ◽  
...  

We present here the complete genome sequences of three Salmonella enterica subsp. enterica serovar Muenchen strains, LG24, LG25, and LG26. All three strains were isolated from almond drupes grown in an orchard in San Joaquin County, California, in 2016. These genomic sequences are nonidentical and will contribute to our understanding of S. enterica genomics.


2017 ◽  
Vol 1 ◽  
pp. 16 ◽  
Author(s):  
Tran Tan Thanh ◽  
Hoang Minh Tu Van ◽  
Nguyen Thi Thu Hong ◽  
Le Nguyen Truc Nhu ◽  
Nguyen To Anh ◽  
...  

As part of an ongoing effort to generate complete genome sequences of hand, foot and mouth disease-causing enteroviruses directly from clinical specimens, two complete coding sequences and two partial genomic sequences of human bocavirus 1 (n=3) and 2 (n=1) were co-amplified and sequenced, representing the first genome sequences of human bocaviruses from Vietnam. The sequences may aid future study aiming at understanding the evolution of the virus.


2016 ◽  
Vol 1 ◽  
pp. 16
Author(s):  
Tran Tan Thanh ◽  
Hoang Minh Tu Van ◽  
Nguyen Thi Thu Hong ◽  
Le Nguyen Truc Nhu ◽  
Nguyen To Anh ◽  
...  

As part of an ongoing effort to generate complete genome sequences of hand, foot and mouth disease-causing enteroviruses directly from clinical specimens, two complete coding sequences and two partial genomic sequences of human bocavirus 1 (n=3) and 2 (n=1) were co-amplified and sequenced, representing the first genome sequences of human bocaviruses from Vietnam. The sequences may aid future study aiming at understanding the evolution of the pathogen.


2018 ◽  
Vol 6 (12) ◽  
Author(s):  
Tomoichiro Oka ◽  
Nobuhiro Iritani ◽  
Mineyuki Okada ◽  
Tomoko Ogawa ◽  
Setsuko Iizuka ◽  
...  

ABSTRACT We report here the first complete genome sequences of genotype GI.3, GI.4, GI.6, GI.7, and GII.7 sapovirus strains, detected from fecal samples of acute gastroenteritis patients. Complete or nearly complete genome sequences of all 18 genotypes of human sapoviruses are now available for phylogenetic analysis and primer design.


2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Lisa Gorski ◽  
Steven Huynh ◽  
Kerry K. Cooper ◽  
Craig T. Parker

ABSTRACT Salmonella enterica subsp. enterica strains RM11060, serotype 6,8:d:−, and RM11065, serotype 6,8:−:e,n,z15, were isolated from environmental samples collected in central California in 2009. We report the complete genome sequences of these two strains. These genomic sequences are distinct and will provide additional data to our understanding of S. enterica genomics.


2017 ◽  
Vol 21 (4) ◽  
pp. 472-476 ◽  
Author(s):  
Teresinha Teixeira de Sousa ◽  
Tâmera Nunes Vieira Almeida ◽  
Fabíola Souza Fiaccadori ◽  
Menira Souza ◽  
Kareem Rady Badr ◽  
...  

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Yan Hu ◽  
Zhiqiang Duan ◽  
Xinqin Ji ◽  
Jiafu Zhao ◽  
Houqiang Xu ◽  
...  

Here, we report the complete genome sequences of two Newcastle disease viruses, Sheldrake duck/China/Guizhou/01/2016 and Sheldrake duck/China/Guizhou/02/2016, isolated from Sansui Sheldrake ducks in Guizhou Province, China. The genome of the isolates is 15,198 nucleotides in length. Phylogenetic analysis revealed that the isolates are clustered into subgenotype 1b in class I.


2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Akira Yusa ◽  
Nozomu Iwabuchi ◽  
Hiroaki Koinuma ◽  
Takuya Keima ◽  
Yutaro Neriya ◽  
...  

Hydrangea ringspot virus (HdRSV) is a plant RNA virus, naturally infecting Hydrangea macrophylla . Here, we report the first genomic sequences of two HdRSV isolates from hydrangea plants in Japan. The overall nucleotide sequences of these Japanese isolates were 96.0 to 96.3% identical to those of known European isolates.


2021 ◽  
Author(s):  
Panpan Tong ◽  
Xiaozhen Song ◽  
Meiling Ren ◽  
Erken Jia ◽  
Lei Zhang ◽  
...  

Abstract Background: Nine species of Equus caballus papillomavirus (EcPV) have been reported to infect horses, however, there are so far no reports of such infections in China. Results: In our pioneer study with Chinese horses, we found EcPV-1 in intranasal papilloma and nasal swabs, EcPV-2 in nasal swabs and semen, and EcPV-7 primarily in semen. This indicates that EcPVs are indeed hosted by horses in China, and that EcPV-2 and 7 may be getting transmitted though breeding. Sequence analyses for complete genomic sequences of EcPV-1 (G2), EcPV-2 (XJ-KS1391) and EcPV-7 (XJ-zs1) were performed which indicated that EcPV-1, 2 and 7, that infect horses in China, share 99.3% nt identity with the already published sequences for EcPV-1, 2 and 7. These observations indicate that three types of EcPVs identified in the current study are highly similar variants of previously known types of EcPV-1, 2 and 7. Phylogenetic analysis based on L1 genes in GenBank showed that EcPV-1, 2 and 7, found in Chinese horses, are closely related to and clustered together with already known EcPV-1, 2 and 7, respectively. Conclusion: Our study provides a novel evidence for EcPVs infection and circulation in Chinese horses and thus lays the foundation for a systematic and detailed epidemiological study of these infections in Chinese horses.


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