scholarly journals The Draft Genome Sequence of Paenibacillus polymyxa Strain CCI-25 Encompasses High Potential for Secondary Metabolite Production

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Gajender Aleti ◽  
Livio Antonielli ◽  
Erika Corretto ◽  
Branislav Nikolić ◽  
Angela Sessitsch ◽  
...  
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Polyketide Synthase ◽  
Draft Genome ◽  
Paenibacillus Polymyxa ◽  
Antibacterial Activities ◽  
Draft Genome Sequence ◽  
Peptide Synthetases

We report here the draft genome sequence of Paenibacillus polymyxa strain CCI-25, which displays strong antifungal and antibacterial activities in vitro . The genome encompasses nonribosomal peptide synthetases predicted to encode a tridecaptin, polymyxin, fusaricidin, an iturin-like synthetase, a lantibiotic similar to paenicidin A, as well as a type 1 polyketide synthase.

scholarly journals Draft Genome Sequence of Streptomyces sp. TP-A0356, a Producer of Yatakemycin

2015 ◽  
Vol 3 (6) ◽  
Author(s):  
Hisayuki Komaki ◽  
Natsuko Ichikawa ◽  
Akira Hosoyama ◽  
Nobuyuki Fujita ◽  
Yasuhiro Igarashi
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Sequence Data ◽  
Draft Genome ◽  
Gene Clusters ◽  
Polyketide Synthases ◽  
Draft Genome Sequence ◽  
Antitumor Antibiotic ◽  
Streptomyces Sp ◽  
Peptide Synthetases

Here, we report the draft genome sequence of Streptomyces sp. TP-A0356, a producer of a potent antitumor antibiotic, yatakemycin, to evaluate potential for secondary metabolite production. The genome sequence data suggest the presence of at least nine gene clusters for polyketide synthases and nonribosomal peptide synthetases in this strain.

scholarly journals Draft Genome Sequence of Saccharomonospora sp. Strain LRS4.154, a Moderately Halophilic Actinobacterium with the Biotechnologically Relevant Polyketide Synthase and Nonribosomal Peptide Synthetase Systems

2017 ◽  
Vol 5 (21) ◽  
Author(s):  
Scarlett Alonso-Carmona ◽  
Blanca Vera-Gargallo ◽  
Rafael R. de la Haba ◽  
Antonio Ventosa ◽  
Horacio Sandoval-Trujillo ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Polyketide Synthase ◽  
Draft Genome ◽  
Nonribosomal Peptide Synthetase ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nonribosomal Peptide ◽  
Moderately Halophilic ◽  
Peptide Synthetase ◽  
Reading Frames

ABSTRACT The draft genome sequence of Saccharomonospora sp. strain LRS4.154, a moderately halophilic actinobacterium, has been determined. The genome has 4,860,108 bp, a G+C content of 71.0%, and 4,525 open reading frames (ORFs). The clusters of PKS and NRPS genes, responsible for the biosynthesis of a large number of biomolecules, were identified in the genome.

scholarly journals Draft Genome Sequences of Fungus Aspergillus calidoustus

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Fabian Horn ◽  
Jörg Linde ◽  
Derek J. Mattern ◽  
Grit Walther ◽  
Reinhard Guthke ◽  
...  
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Functional Annotation ◽  
Draft Genome ◽  
Genome Mining ◽  
Gene Clusters ◽  
Draft Genome Sequence ◽  
Genome Sequences

Here, we report the draft genome sequence of Aspergillus calidoustus (strain SF006504) . The functional annotation of A. calidoustus predicts a relatively large number of secondary metabolite gene clusters. The presented genome sequence builds the basis for further genome mining.

scholarly journals Draft Genome Sequence of Paenibacillus polymyxa Strain Mc5Re-14, an Antagonistic Root Endophyte of Matricaria chamomilla

2015 ◽  
Vol 3 (4) ◽  
Author(s):  
Martina Köberl ◽  
Richard A. White ◽  
Sabine Erschen ◽  
Tarek F. El-Arabi ◽  
Janet K. Jansson ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Paenibacillus Polymyxa ◽  
Draft Genome Sequence ◽  
Matricaria Chamomilla ◽  
Root Endophyte

scholarly journals Draft Genome Sequence of Pseudomonas aeruginosa ATCC 9027, Originally Isolated from an Outer Ear Infection

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Ambikesh Jayal ◽  
Benjamin E. Johns ◽  
Kevin J. Purdy ◽  
Sarah E. Maddocks
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Genome Sequence ◽  
Otitis Externa ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Control Strain ◽  
Content Type ◽  
Antibiofilm Agents ◽  
Quality Control Strain

ABSTRACT Pseudomonas aeruginosa ATCC 9027 was isolated in 1943 from a case of otitis externa and is commonly employed as a quality control strain for sterility, assessment of antibiofilm agents, and in vitro study of wound infection. Here, we present the 6.34-Mb draft genome sequence and highlight some pertinent genes that are associated with virulence.

scholarly journals Draft Genome Sequence of Pediatric Otitis Media Isolate Streptococcus pneumoniae Strain EF3030, Which Forms In Vitro Biofilms That Closely Mimic In Vivo Biofilms

2019 ◽  
Vol 8 (2) ◽  
Author(s):  
Edgar J. Scott ◽  
Nicole R. Luke-Marshall ◽  
Anthony A. Campagnari ◽  
David W. Dyer
Keyword(s):  
Streptococcus Pneumoniae ◽  
Otitis Media ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Draft Assembly ◽  
Content Type

Here, we report the draft genome sequence of Streptococcus pneumoniae EF3030, a pediatric otitis media isolate active in biofilm assays of epithelial colonization. The final draft assembly included 2,209,198 bp; the annotation predicted 2,120 coding DNA sequences (CDSs), 4 complete rRNA operons, 58 tRNAs, 3 noncoding RNAs (ncRNAs), and 199 pseudogenes.

scholarly journals High-Quality Draft Genome Sequence of Low-pH-ActiveVeillonella parvulaStrain SHI-1, Isolated from Human Saliva within anIn VitroOral Biofilm Model

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Anna Edlund ◽  
Quanhui Liu ◽  
Michael Watling ◽  
Thao T. To ◽  
Roger E. Bumgarner ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Human Saliva ◽  
Low Ph ◽  
Draft Genome Sequence ◽  
Oral Biofilm ◽  
High Quality ◽  
Healthy Human ◽  
Biofilm Model

We announce here a draft genome sequence ofVeillonella parvulastrain SHI-1, obtained from healthy human saliva, discovered to be active at low pH using metatranscriptomics within anin vitrooral biofilm model. The genome is composed of 7 contigs, for a total of 2,200,064 bp.

scholarly journals Draft Genome Sequence of the Most Traditional ε-Poly-l-Lysine Producer, Streptomyces albulus NBRC14147

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
Kazuya Yamanaka ◽  
Yoshimitsu Hamano
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Lysine Producer

The genus Streptomyces is known for its secondary metabolite biosynthetic capacities. We report here the draft genome sequence of the most extensively studied ε-poly-l-lysine producer, Streptomyces albulus NBRC14147.

scholarly journals Draft Genome Sequence of Ochrobactrum sp. Strain MC-1LL, a Bacterial Strain with Antimicrobial Properties, Isolated from Marine Sediments in Nigeria

2020 ◽  
Vol 9 (22) ◽  
Author(s):  
Bamidele Tolulope Odumosu ◽  
Uzoigwe Ngozika Augusta ◽  
Carolina Cano-Prieto ◽  
Anina Buchmann ◽  
Kay Nieselt ◽  
...  
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Marine Sediments ◽  
Bacterial Strain ◽  
Draft Genome ◽  
Antimicrobial Properties ◽  
Production Capacity ◽  
Draft Genome Sequence ◽  
Metabolite Production ◽  
Insight Into

ABSTRACT Here, we report a 4.3-Mb draft genome sequence of a potential new Ochrobactrum species, which clarified its taxonomic position and gave insight into the complete secondary metabolite production capacity of the strain.

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