ABSTRACTStaphylococcus aureusstrains producing the bacteriophage-encoded staphylococcal enterotoxin A (SEA) were divided into two groups, high- and low-SEA-producing strains, based on the amount of SEA produced. After growth under favorable conditions in batch cultures, 10 of the 21 strains tested produced more than 1,000 ng/ml SEA, and 9 strains produced less than 10 ng/ml SEA; two enterotoxigenic strains, MRSA252 and Newman, produced intermediate levels of SEA (around 450 ng/ml). The differences in the production of SEA were found to be associated with the expression level ofseaand whether the strains hosted thesea1orsea2version. Furthermore, differences in nucleotide sequence in theSiphoviridaephage region showed two clonal lineages of the high-SEA-producing strains. One of these lines was correlated with the capacity for a massive increase in SEA levels by prophage induction as demonstrated using mitomycin C (MC). This was also confirmed by the occurrence of additionalseaexpression, presumed to be initiated by a latent phage promoter located upstream of the endogenousseapromoter. Remarkably, the SEA level was increased up to 10-fold in some strains due to prophage induction. The low-SEA-producing group and the high-SEA-producing subgroup lacking phage-activatedseatranscription showed no increase in SEA formation after the addition of MC. This study demonstrates thatseaexpression in enterotoxigenic strains is correlated with the clonal lineage ofsea-carrying phages. The high-SEA-producing group, in particular the prophage-induciblesea1group, may be more relevant to staphylococcal food poisoning than the low-SEA-producing group, harboring mainlysea2.