scholarly journals Genome Sequence of “ Anthococcus ,” a Novel Genus of the Family Streptococcaceae Isolated from Flowers

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Li-Oon Chuah ◽  
Kien-Pong Yap ◽  
Kwai Lin Thong ◽  
Min Tze Liong ◽  
Rosma Ahmad ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Novel Genus ◽  
Durio Zibethinus ◽  
The Family

Here, we report the draft whole-genome sequence of “ Anthococcus ,” a novel genus of the family Streptococcaceae isolated from fresh flowers of a durian ( Durio zibethinus ) tree. The draft genome of Anthococcus sp. strain DF1 contains 2,157,756 bp, with a G+C content of 33.0%.

Taxonomic revision of Harveyi clade bacteria (family Vibrionaceae) based on analysis of whole genome sequences

2013 ◽  
Vol 63 (Pt_7) ◽  
pp. 2742-2751 ◽  
Author(s):  
Henryk Urbanczyk ◽  
Yoshitoshi Ogura ◽  
Tetsuya Hayashi
Keyword(s):  
Genome Sequence ◽  
Sequence Data ◽  
Draft Genome ◽  
Taxonomic Revision ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
Genome Sequence Data ◽  
The Family

Use of inadequate methods for classification of bacteria in the so-called Harveyi clade (family Vibrionaceae, Gammaproteobacteria) has led to incorrect assignment of strains and proliferation of synonymous species. In order to resolve taxonomic ambiguities within the Harveyi clade and to test usefulness of whole genome sequence data for classification of Vibrionaceae, draft genome sequences of 12 strains were determined and analysed. The sequencing included type strains of seven species: Vibrio sagamiensis NBRC 104589T, Vibrio azureus NBRC 104587T, Vibrio harveyi NBRC 15634T, Vibrio rotiferianus LMG 21460T, Vibrio campbellii NBRC 15631T, Vibrio jasicida LMG 25398T, and Vibrio owensii LMG 25443T. Draft genome sequences of strain LMG 25430, previously designated the type strain of [Vibrio communis], and two strains (MWB 21 and 090810c) from the ‘beijerinckii’ lineage were also determined. Whole genomes of two additional strains (ATCC 25919 and 200612B) that previously could not be assigned to any Harveyi clade species were also sequenced. Analysis of the genome sequence data revealed a clear case of synonymy between V. owensii and [V. communis], confirming an earlier proposal to synonymize both species. Both strains from the ‘beijerinckii’ lineage were classified as V. jasicida, while the strains ATCC 25919 and 200612B were classified as V. owensii and V. campbellii, respectively. We also found that two strains, AND4 and Ex25, are closely related to Harveyi clade bacteria, but could not be assigned to any species of the family Vibrionaceae. The use of whole genome sequence data for the taxonomic classification of the Harveyi clade bacteria and other members of the family Vibrionaceae is also discussed.

scholarly journals Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing CyanobacteriumNostoc cycadaeStrain WK-1, Isolated from the Coralloid Roots ofCycas revoluta

2018 ◽  
Vol 6 (7) ◽  
Author(s):  
Yu Kanesaki ◽  
Masaki Hirose ◽  
Yuu Hirose ◽  
Takatomo Fujisawa ◽  
Yasukazu Nakamura ◽  
...  
Keyword(s):  
Host Plant ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Nitrogen Fixing ◽  
Coralloid Roots ◽  
Cycas Revoluta

ABSTRACTWe report here the whole-genome sequence ofNostoc cycadaestrain WK-1, which was isolated from cyanobacterial colonies growing in the coralloid roots of the gymnospermCycas revoluta. It can provide valuable resources to study the mutualistic relationships and the syntrophic metabolisms between the cyanobacterial symbiont and the host plant,C. revoluta.

scholarly journals Draft Genome Sequence of Acholeplasma laidlawii Isolated from the Conjunctiva of a Heifer with Infectious Bovine Keratoconjunctivitis

2021 ◽  
Vol 10 (4) ◽  
Author(s):  
Gloria Gioia ◽  
Maria F. Addis ◽  
Laura B. Goodman ◽  
Patrick K. Mitchell ◽  
Belinda Thompson ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Infectious Bovine Keratoconjunctivitis ◽  
Acholeplasma Laidlawii

ABSTRACT Acholeplasma laidlawii can be isolated from cattle environments and different body sites of bovines. It is still under evaluation if A. laidlawii acts as a primary pathogen. Here, we present the whole-genome sequence of A. laidlawii isolated from the conjunctiva of a heifer with infectious bovine keratoconjunctivitis.

scholarly journals Whole Genome Sequencing Reveals Identification of New Acinetobacter spp. (maqsudiensis) from Local Meat Samples Collected from Dhaka, Bangladesh

2018 ◽  
Author(s):  
Muhammad Maqsud Hossain ◽  
Abdus Sadique ◽  
Aura Rahman ◽  
Abdul Khaleque ◽  
Abdul Mueed Ibne Momen ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Acinetobacter Species ◽  
E Coli ◽  
Potential Marker ◽  
Meat Samples ◽  
Generation Technology

In this study we announce the draft genome sequence of a newly identified Acinetobacter species cross-reacting with E. coli serotype 0157:H7. The advent of Next-Generation technology has paved to way to discover new species which could otherwise be misidentified using conventional cultural and serotyping methods. The whole genome sequence of this isolate will help to identify potential marker/s of intervention and further genomic analysis might also shed light onto the virulence properties of this newly identified Acinetobacter species which has been provided the new name of Acinetobacter maqsudiensis.

scholarly journals Draft Genome Sequence of Cloacibacterium normanense NRS-1 Isolated from Municipal Wastewater

2016 ◽  
Vol 4 (6) ◽  
Author(s):  
Nicole R. Gay ◽  
Elizabeth Fleming ◽  
Julia Oh
Keyword(s):  
Genome Sequence ◽  
Municipal Wastewater ◽  
Draft Genome ◽  
Phosphate Removal ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Negative Bacterium ◽  
Apparent Absence ◽  
Gram Negative ◽  
Human Stool

Cloacibacterium normanense is a Gram-negative bacterium recovered from untreated human wastewater. Given its high abundance in wastewater and its apparent absence in human stool, it may contribute to biological phosphate removal. Here, we perform a whole-genome sequence of C. normanense NRS-1(T) and examine particular features of this draft genome.

scholarly journals Draft Genome Sequence of an InvasiveStreptococcus agalactiaeIsolate Lacking Pigmentation

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Pallavi Singh ◽  
David M. Aronoff ◽  
H. Dele Davies ◽  
Shannon D. Manning
Keyword(s):  
Genome Sequence ◽  
Streptococcus Agalactiae ◽  
Draft Genome ◽  
Pigment Production ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome

This report provides the whole-genome sequence ofStreptococcus agalactiaeisolate GB00037 isolated from a newborn in Calgary, Canada. This serotype V isolate is unique because it lacks pigment production previously shown to be critical forS. agalactiaevirulence.

scholarly journals Whole-Genome Sequence of a Mycobacterium goodii Isolate from a Pediatric Patient in South Africa

2018 ◽  
Vol 6 (3) ◽  
Author(s):  
Mushal Allam ◽  
Lavania Joseph ◽  
Farzana Ismail ◽  
Halima Said ◽  
Nazir A. Ismail ◽  
...  
Keyword(s):  
South Africa ◽  
Pediatric Patient ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Western Cape ◽  
Mycobacterial Species ◽  
Mycobacterium Goodii

ABSTRACT We describe here the draft genome sequence of a Mycobacterium goodii isolate from a pediatric patient in Western Cape, South Africa. To our knowledge, this is the second reported genome of this rapidly growing nontuberculous mycobacterial species.

scholarly journals Draft Genome Sequence of the Green Alga Scenedesmus acuminatus SAG 38.81

2020 ◽  
Vol 9 (24) ◽  
Author(s):  
Yekaterina Astafyeva ◽  
Malik Alawi ◽  
Daniela Indenbirken ◽  
Dominik Danso ◽  
Adam Grundhoff ◽  
...  
Keyword(s):  
Fatty Acids ◽  
Genome Sequence ◽  
Draft Genome ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Green Microalga ◽  
Scenedesmus Acuminatus ◽  
Valuable Compounds ◽  
Β Carotene

ABSTRACT Scenedesmus acuminatus, also known as Tetradesmus acuminatus, is a promising green microalga for sustainable production of microalga products, including valuable compounds such as astaxanthin, β-carotene, and lutein, polysaccharides such as β-glucan, and polyunsaturated fatty acids. Here, we report the draft whole-genome sequence of Scenedesmus acuminatus SAG 38.81.

scholarly journals Draft Genome Sequence of Streptococcus suis S10, a Virulent Strain Used in Experimental Pig Infections

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Rogier A. Gaiser ◽  
Aldert L. Zomer ◽  
Jerry M. Wells ◽  
Peter van Baarlen
Keyword(s):  
Infectious Diseases ◽  
Genome Sequence ◽  
Virulent Strain ◽  
Draft Genome ◽  
Streptococcus Suis ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Highly Virulent

Here, we report the draft whole-genome sequence of Streptococcus suis strain S10, isolated from the tonsils of a healthy pig. S. suis S10 belongs to the highly virulent serotype 2, which includes isolates that cause infectious diseases, including meningitis, in pigs and human.

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