scholarly journals High-Quality Draft Genome Sequences of Five Xanthomonas arboricola pv. fragariae Isolates

2018 ◽  
Vol 6 (7) ◽  
Author(s):  
Michael Gétaz ◽  
Steve Baeyen ◽  
Jochen Blom ◽  
Martine Maes ◽  
Bart Cottyn ◽  
...  
Keyword(s):  
Draft Genome ◽  
Leaf Blight ◽  
Causal Agent ◽  
Bacterial Leaf Blight ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Xanthomonas Arboricola

ABSTRACT Xanthomonas arboricola pv. fragariae was described in 2001 as the causal agent of strawberry bacterial leaf blight. We report here the first draft whole-genome sequences of five X. arboricola pv. fragariae isolates from Italy and France.

scholarly journals Complete and Draft Genome Sequences of the Cruciferous Pathogens Pseudomonas cannabina pv. alisalensis and Pseudomonas syringae pv. maculicola

2021 ◽  
Vol 10 (17) ◽  
Author(s):  
Takashi Fujikawa ◽  
Yuichi Takikawa ◽  
Yasuhiro Inoue
Keyword(s):  
Pseudomonas Syringae ◽  
Leaf Spot ◽  
Draft Genome ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Genome Sequences ◽  
Bacterial Leaf Spot ◽  
Content Type

ABSTRACT Pseudomonas cannabina pv. alisalensis and Pseudomonas syringae pv. maculicola cause bacterial leaf blight and bacterial leaf spot of crucifers (Brassicaceae). Both pathogens are threats to the cultivation of cruciferous crops. Here, we sequenced two strains of each pathogen, which will contribute to the development of countermeasures for the above diseases.

scholarly journals Whole-Genome Sequences of Two Closely Related Bacteria, Actinomyces sp. Strain Chiba101 and Actinomyces denticolens DSM 20671T

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yu Kanesaki ◽  
Taichiro Ishige ◽  
Yuriko Sekigawa ◽  
Tomoko Kobayashi ◽  
Yasushi Torii ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type

ABSTRACT Actinomyces sp. strain Chiba101, isolated from an arthritic leg joint of a pig raised in Japan, is a bacterium closely related to Actinomyces denticolens. Here, we deciphered the complete genome sequence of Actinomyces sp. Chiba101 and the high-quality draft genome sequence of A. denticolens DSM 20671T.

scholarly journals High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Rebecca L. Lindsey ◽  
Dhwani Batra ◽  
Lori Rowe ◽  
Vladimir N. Loparev ◽  
Phalasy Juieng ◽  
...  
Keyword(s):  
Draft Genome ◽  
Shigella Sonnei ◽  
Whole Genome ◽  
Drug Resistant ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Content Type ◽  
Genome Maps ◽  
Public Health Challenge

ABSTRACT Drug-resistant Shigella sonnei poses a clinical and public health challenge. We report here the high-quality draft whole-genome sequences of four outbreak-associated S. sonnei isolates; three were resistant to two or more antibiotics, and one was resistant to streptomycin only.

scholarly journals High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps: TABLE 1

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Rebecca L. Lindsey ◽  
Lori Rowe ◽  
Lisley Garcia-Toledo ◽  
Vladimir Loparev ◽  
Kristen Knipe ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Shiga Toxin ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
The United States ◽  
Whole Genome ◽  
Genome Sequences ◽  
Pacbio Sequencing ◽  
High Quality ◽  
Optical Maps

Shiga toxin-producing Escherichia coli (STEC) is a foodborne pathogen. We report here the high-quality draft whole-genome sequences of five STEC strains isolated from clinical cases in the United States. This report is for STEC of serotypes O55:H7, O79:H7, O91:H14, O153:H2, and O156:H25.

scholarly journals Whole-Genome Sequencing of Two Latin American–Mediterranean Extensively Drug-Resistant  Mycobacterium tuberculosis  Clinical Isolates from Medellín, Colombia

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
N. Alvarez ◽  
D. Haft ◽  
U. A. Hurtado ◽  
J. Robledo ◽  
F. Rouzaud
Keyword(s):  
Mycobacterium Tuberculosis ◽  
Genome Sequencing ◽  
Latin American ◽  
Draft Genome ◽  
Clinical Isolates ◽  
Whole Genome ◽  
Drug Resistant ◽  
Genome Sequences ◽  
High Quality ◽  
Extensively Drug Resistant

Colombia, with a tuberculosis incidence of 33 cases per 100,000 population, is one of the countries that have reported extensively drug-resistant  Mycobacterium tuberculosis  (XDR-TB). We report the high-quality draft genome sequences of two Latin American–Mediterranean XDR-TB clinical isolates (TBR-152 and TBR-175), comprising 4,303,775 bp and 4,330,115 bp, respectively.

scholarly journals Draft Genome Sequences of Xylella fastidiosa subsp. fastidiosa Strains OK3, VB11, and NOB1, Isolated from Bunch and Muscadine Grapes Grown in Southern Mississippi

2020 ◽  
Vol 9 (25) ◽  
Author(s):  
Olga V. Mavrodi ◽  
Dmitri V. Mavrodi ◽  
Eric T. Stafne ◽  
John J. Adamczyk ◽  
Ebrahiem M. Babiker
Keyword(s):  
Xylella Fastidiosa ◽  
Draft Genome ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type ◽  
Muscadine Grape ◽  
Genome Assemblies ◽  
Muscadine Grapes

ABSTRACT We report here high-quality draft whole-genome assemblies of Xylella fastidiosa subsp. fastidiosa strains OK3, VB11, and NOB1, which were isolated from symptomatic bunch and muscadine grape plants grown in southern Mississippi.

scholarly journals High-Quality Complete and Draft Genome Sequences for Three Escherichia spp. and Three Shigella spp. Generated with Pacific Biosciences and Illumina Sequencing and Optical Mapping

2018 ◽  
Vol 6 (1) ◽  
Author(s):  
Max R. Schroeder ◽  
Phalasy Juieng ◽  
Dhwani Batra ◽  
Kristen Knipe ◽  
Lori A. Rowe ◽  
...  
Keyword(s):  
Draft Genome ◽  
Shigella Dysenteriae ◽  
Reference Level ◽  
Whole Genome ◽  
Foodborne Disease ◽  
Genome Sequences ◽  
High Quality ◽  
E Coli ◽  
Shigella Spp ◽  
Causative Agents

ABSTRACT Escherichia spp., including E. albertii and E. coli, Shigella dysenteriae, and S. flexneri are causative agents of foodborne disease. We report here reference-level whole-genome sequences of E. albertii (2014C-4356), E. coli (2011C-4315 and 2012C-4431), S. dysenteriae (BU53M1), and S. flexneri (94-3007 and 71-2783).

scholarly journals Draft Genome Sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, Novel Potential Probiotic Strains for Honeybees (Apis mellifera L.)

2018 ◽  
Vol 7 (6) ◽  
Author(s):  
Marcela Carina Audisio ◽  
Leonardo Albarracín ◽  
Maria Julia Torres ◽  
Lucila Saavedra ◽  
Elvira Maria Hebert ◽  
...  
Keyword(s):  
Apis Mellifera ◽  
Genome Sequencing ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Whole Genome ◽  
Genome Sequences ◽  
Lactobacillus Johnsonii ◽  
Lactobacillus Salivarius ◽  
Content Type ◽  
Probiotic Strains

This report describes the draft genome sequences of Lactobacillus salivarius A3iob and Lactobacillus johnsonii CRL1647, probiotic strains isolated from the gut of honeybee Apis mellifera workers. The reads were generated by a whole-genome sequencing (WGS) strategy on an Illumina MiSeq sequencer and were assembled into contigs with total sizes of 2,054,490 and 2,137,413 bp for the A3iob and CRL1647 strains, respectively.

scholarly journals Draft Genome Sequences of Six Skin Isolates of Streptococcus pyogenes

2018 ◽  
Vol 6 (26) ◽  
Author(s):  
Zhong Liang ◽  
Melissa Stephens ◽  
Victoria A. Ploplis ◽  
Shaun W. Lee ◽  
Francis J. Castellino
Keyword(s):  
Streptococcus Pyogenes ◽  
Draft Genome ◽  
Whole Genome Shotgun ◽  
Whole Genome ◽  
Genome Sequences ◽  
Bottom Up ◽  
Content Type

Whole-genome shotgun sequences and bottom-up assembly of contigs of six skin isolates of Streptococcus pyogenes, viz., NS88.3 (emm98.1), NS223 (emm91), NS455 (emm52), SS1448 (emm86.2), SS1572 (emm223), and SS1574 (emm224), are presented here. All contigs were annotated, and the gene arrangements and the inferred proteins were consistent with a pattern D classification.

scholarly journals Draft Whole-Genome Sequences of Seven Listeria monocytogenes Strains with Variations in Virulence and Stress Responses

2018 ◽  
Vol 7 (13) ◽  
Author(s):  
Yanhong Liu ◽  
Aixia Xu ◽  
Pina M. Fratamico ◽  
Christopher H. Sommers ◽  
Luca Rotundo ◽  
...  
Keyword(s):  
Listeria Monocytogenes ◽  
Stress Responses ◽  
Draft Genome ◽  
Foodborne Pathogen ◽  
Whole Genome ◽  
Genome Sequences ◽  
Content Type

Listeria monocytogenes is an important foodborne pathogen that causes listeriosis. Here, we report the draft genome sequences of seven L. monocytogenes strains isolated from food, environmental, and clinical sources.

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