scholarly journals Genome Sequence of Lentisphaera araneosa HTCC2155T, the Type Species of the Order Lentisphaerales in the Phylum Lentisphaerae

2010 ◽  
Vol 192 (11) ◽  
pp. 2938-2939 ◽  
Author(s):  
J. Cameron Thrash ◽  
Jang-Cheon Cho ◽  
Kevin L. Vergin ◽  
Robert M. Morris ◽  
Stephen J. Giovannoni
Keyword(s):  
Genome Sequence ◽  
Type Species ◽  
Microbial Evolution ◽  
Unusual Property ◽  
Oregon Coast ◽  
The Pacific ◽  
Genome Content

ABSTRACT Information on the genome content of deeply branching phyla with very few cultured members is invaluable for expanding understanding of microbial evolution. Lentisphaera araneosa HTCC2155T was isolated from the Oregon coast using dilution-to-extinction culturing. It is a marine heterotroph found in surface and mesopelagic waters in both the Pacific and Atlantic oceans and has the unusual property of producing a net-like matrix of secreted exopolysaccharide. Here we present the genome sequence of L. araneosa HTCC2155T, importantly, one of only two sequenced members of the phylum Lentisphaerae.

Completion of the genome sequence of Lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus

2006 ◽  
Vol 118 (1-2) ◽  
pp. 16-22 ◽  
Author(s):  
Ralf G. Dietzgen ◽  
Ben Callaghan ◽  
Thierry Wetzel ◽  
James L. Dale
Keyword(s):  
Virus Type ◽  
Genome Sequence ◽  
Type Species

scholarly journals Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation

2021 ◽  
Vol 7 (11) ◽  
Author(s):  
Janine T. Bossé ◽  
Yanwen Li ◽  
Liza Miriam Cohen ◽  
Marc Stegger ◽  
Øystein Angen ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Comparative Analysis ◽  
Illumina Sequencing ◽  
Complete Genome ◽  
Type Species ◽  
Reference Strain ◽  
Actinobacillus Pleuropneumoniae ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
The Pacific

We report here the complete genome sequence of the widely studied Actinobacillus pleuropneumoniae serovar 8 reference strain 405, generated using the Pacific Biosciences (PacBio) RS II platform. Furthermore, we compared draft sequences generated by Illumina sequencing of six stocks of this strain, including the same original stock used to generate the PacBio sequence, held in different countries and found little genetic variation, with only three SNPs identified, all within the degS gene. However, sequences of two small plasmids, pARD3079 and p405tetH, detected by Illumina sequencing of the draft genomes were not identified in the PacBio sequence of the reference strain.

scholarly journals Solimonas marina sp. nov., isolated from deep seawater of the Pacific Ocean

2021 ◽  
Vol 71 (1) ◽  
Author(s):  
Xiupian Liu ◽  
Qiliang Lai ◽  
Fengqin Sun ◽  
Yaping Du ◽  
Yingbao Gai ◽  
...  
Keyword(s):  
Pacific Ocean ◽  
Type Species ◽  
Sequence Similarity ◽  
Rrna Gene ◽  
Chromosomal Dna ◽  
Deep Seawater ◽  
Content Type ◽  
Link Type ◽  
The Pacific ◽  
The Pacific Ocean

A taxonomic study was carried out on strain C16B3T, which was isolated from deep seawater of the Pacific Ocean. The bacterium was Gram-stain-negative, oxidase- and catalase- positive and rod-shaped. Growth was observed at salinities of 0–8.0 % and at temperatures of 10–45 °C. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain C16B3T belonged to the genus Solimonas , with the highest sequence similarity to Solimonas terrae KIS83-12T (97.2 %), followed by Solimonas variicoloris MN28T (97.0 %) and the other four species of the genus Solimonas (94.5 –96.8 %). The average nucleotide identity and estimated DNA–DNA hybridization values between strain C16B3T and the type strains of the genus Solimonas were 74.05−79.48 % and 19.5–22.5 %, respectively. The principal fatty acids (>5 %) were summed feature 8 (C18 : 1  ω7c/C18 : 1  ω6c; 20.9 %), iso-C16 : 0 (14.6 %), C16 : 1  ω5c (9.4 %), iso-C12 : 0 (8.4 %), summed feature 2 (C14 : 0 3-OH/iso I-C16 : 1 and C12 : 0 aldehyde; 6.8 %) and C16 : 0 (5.5 %). The G+C content of the chromosomal DNA was 65.37 mol%. The respiratory quinone was determined to be Q-8 (100 %). The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, four unidentified aminolipids, six unidentified phospholipids and one unidentified polar lipid. The combined genotypic and phenotypic data show that strain C16B3T represents a novel species within the genus Solimonas , for which the name Solimonas marina sp. nov. is proposed, with the type strain C16B3T (=MCCC 1A04678T=KCTC 52314T).

Revalidation of the milliped genus Amplaria Chamberlin 1941 (Diplopoda,  Chordeumatida, Striariidae), and description of two new species from caves in Sequoia and Kings Canyon National Parks, California

Zootaxa ◽  
2007 ◽  
Vol 1532 (1) ◽  
pp. 23-39 ◽  
Author(s):  
WILLIAM A. SHEAR ◽  
JEAN K. KREJCA
Keyword(s):  
New Species ◽  
North America ◽  
National Parks ◽  
Type Species ◽  
Washington State ◽  
Eastern North America ◽  
The Pacific ◽  
Two New Species ◽  
Phyletic Line

The milliped genus Amplaria Chamberlin 1941 was synonymized with Striaria Bollman 1888 by Hoffman (1980). Examination of a much wider range of materials of nominal Striaria species both from eastern North America and the Pacific coastal states shows that some species occurring from California to Washington (state) represent a distinct phyletic line, for which Amplaria Chamberlin 1941 is the oldest available generic name. Speostriaria Causey 1960 is a synonym of Amplaria. Amplaria muiri n. sp. and A. adamsi n. sp. are two new, recently discovered species from caves in Sequoia and Kings Canyon National Parks, California. Illustrations are provided of a specimen that may represent the type species, Amplaria eutypa (Chamberlin) 1953.

scholarly journals High-Quality Whole-Genome Sequence of an Estradiol-Degrading Strain, Novosphingobium tardaugens NBRC 16725

2019 ◽  
Vol 8 (11) ◽  
Author(s):  
J. Ibero ◽  
D. Sanz ◽  
B. Galán ◽  
E. Díaz ◽  
J. L. García
Keyword(s):  
Genome Sequence ◽  
Complete Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
High Quality ◽  
Content Type ◽  
Pacific Biosciences ◽  
Degrading Bacterium ◽  
The Pacific

In this work we report the complete sequence and assembly of the estradiol-degrading bacterium Novosphingobium tardaugens NBRC 16725 genome into a single contig using the Pacific Biosciences RS II system.

scholarly journals Draft Genome Sequence of Streptomyces sp. Strain RFCAC02, Isolated from the Gut Microflora of the Pacific Chub Mackerel Scomber japonicus peruanus

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Wilbert Serrano ◽  
Raul M. Olaechea ◽  
Joachim Wink ◽  
Michael W. Friedrich
Keyword(s):  
Secondary Metabolites ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Gut Microflora ◽  
Scomber Japonicus ◽  
Chub Mackerel ◽  
Content Type ◽  
Streptomyces Sp ◽  
The Pacific

A new strain of Streptomyces sp., strain RFCAC02, was isolated from the gut of the Pacific chub mackerel Scomber japonicus peruanus. This strain produces a variety of secondary metabolites.

A revision of the genus Orchestia Leach, 1814 with the reinstatement of O. inaequalipes (K.H. Barnard, 1951), the designation of a neotype for Orchestia gammarellus (Pallas, 1776) and the description of three new species (Crustacea: Amphipoda: Talitridae: Talitrinae)

Zootaxa ◽  
2020 ◽  
Vol 4808 (2) ◽  
pp. 201-250
Author(s):  
ALAN A. MYERS ◽  
JAMES K. LOWRY
Keyword(s):  
New Species ◽  
North America ◽  
South America ◽  
Type Species ◽  
Pacific Coast ◽  
Species Group ◽  
Eastern North America ◽  
The Pacific ◽  
North Eastern ◽  
Three New Species

The amphipod genus Orchestia is revised. It now includes 10 species of which three are new: O. forchuensis sp. nov. from north-eastern North America and Iceland., O. perezi sp. nov. from Chile and O. tabladoi sp. nov. from Argentina. Orchestia inaequalipes (K.H. Barnard 1951) is reinstated. The type species of the genus, O. gammarellus is redescribed based on material from Fountainstown, Ireland and a neotype is established to stabilize the species. The species was originally described from a garden in Leiden, far from the sea. Its true identity is unknown and no type material exists. Orchestia gammarellus (Pallas, 1776) is shown to be a sibling species group with members in both hemispheres of the temperate Atlantic as well along the Pacific coast of South America. A hypothesis for the establishment of the current distribution of Orchestia species is presented that extends back to the Cretaceous. 

Paulella, new name for a Bryozoan Homonym (Cyclostomata)

Zootaxa ◽  
2009 ◽  
Vol 2220 (1) ◽  
pp. 67
Author(s):  
VALENTINA I. GONTAR
Keyword(s):  
Type Species ◽  
Pacific Coast ◽  
New Combination ◽  
Monotypic Genus ◽  
New Name ◽  
Kurile Islands ◽  
The Pacific

The recent unintentional creation of a bryozoan secondary homonym requires a change of name for the species affected. Gontar (2009) established the new monotypic genus Paulina (order Cyclostomata), with type species Paulina taylori, for a small, ramifying uniserial species of Oncousoeciidae from the upper shelf of the Pacific coast of the middle Kurile Islands, Russia. Paulina Gontar, 2009 is preoccupied by Paulina Grigelis, 1977 (Protozoa, Foraminifera). Paulella nom. nov. (gender feminine) is here proposed as a replacement genus, resulting in the new combination Paulella taylori (Gontar, 2009).

scholarly journals Genome Sequence of Kurthia Type Species Kurthia zopfii Strain ATCC 33403T

2018 ◽  
Vol 7 (1) ◽  
Author(s):  
Abigail E. Goen ◽  
Kyle S. MacLea
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Type Species ◽  
Meat Products ◽  
Strain Atcc ◽  
Fecal Material ◽  
High Altitudes ◽  
Content Type ◽  
Intestinal Contents

The genome of the type strain of the Kurthia genus, Kurthia zopfii ATCC 33403, was sequenced. Nonpathogenic K. zopfii has been isolated from intestinal contents, fecal material, meats, meat products, milk, water, and air, including air at high altitudes.

Predicting deposition of debris flows in mountain channels

1990 ◽  
Vol 27 (4) ◽  
pp. 409-417 ◽  
Author(s):  
Lee E. Benda ◽  
Terrance W. Cundy
Keyword(s):  
Pacific Northwest ◽  
Debris Flows ◽  
Field Measurements ◽  
Coast Range ◽  
Oregon Coast Range ◽  
Oregon Coast ◽  
Aerial Photos ◽  
The Pacific ◽  
Channel Slope ◽  
Junction Angle

An empirical model for predicting deposition of coarse-textured debris flows in confined mountain channels is developed based on field measurements of 14 debris flows in the Pacific Northwest, U.S.A. The model uses two criteria for deposition: channel slope (less than 3.5°) and tributary junction angle (greater than 70°). The model is tested by predicting travel distances of 15 debris flows in the Oregon Coast Range and six debris flows in the Washington Cascades, U.S.A. The model is further tested on 44 debris flows in two lithological types in the Oregon Coast Range using aerial photos and topographic maps; on these flows only the approximate travel distance is known. The model can be used by resource professionals to identify the potential for impacts from debris flows. Key words: debris flow, deposition, travel, erosion.

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