scholarly journals Draft Genome Sequences of Endophytic Pseudomonas spp. Isolated from Grapevine Tissue and Antagonistic to Grapevine Trunk Disease Pathogens

2019 ◽  
Vol 8 (26) ◽  
Author(s):  
Jennifer Niem ◽  
Regina Billones-Baaijens ◽  
Sandra Savocchia ◽  
Benjamin Stodart
Keyword(s):  
Plant Pathogens ◽  
Draft Genome ◽  
Gene Clusters ◽  
Antagonistic Activity ◽  
Genome Sequences ◽  
Putative Gene ◽  
Content Type ◽  
Trunk Disease ◽  
Grapevine Trunk Disease ◽  
Biocontrol Activity

Endophytic strains of Pseudomonas were isolated from grapevine tissues and exhibited antagonistic activity against several grapevine trunk disease pathogens. The draft genome sequences of the four strains revealed the presence of putative gene clusters that may impart biocontrol activity against plant pathogens.

scholarly journals Draft Genome Sequences of Six Bacillus Strains and One Brevibacillus Strain Isolated from the Rhizosphere of Perennial Ryegrass (Lolium perenne)

2019 ◽  
Vol 8 (4) ◽  
Author(s):  
Zhibo Li ◽  
Chunxu Song ◽  
Anne de Jong ◽  
Oscar P. Kuipers
Keyword(s):  
Lolium Perenne ◽  
Perennial Ryegrass ◽  
Plant Pathogens ◽  
Draft Genome ◽  
Gene Clusters ◽  
Antagonistic Activity ◽  
Genome Sequences ◽  
Modes Of Action ◽  
Bacillus Strains

Seven strains of endospore-forming bacteria with antagonistic activity against a series of plant pathogens were sequenced in order to investigate their antimicrobial gene clusters and antimicrobial modes of action. The selected strains include six Bacillus strains and one Brevibacillus strain.

scholarly journals Complete Genome Sequences of Five Burkholderia Strains with Biocontrol Activity against Various Lettuce Pathogens

2022 ◽  
Author(s):  
Adrien Biessy ◽  
Marie Ciotola ◽  
Mélanie Cadieux ◽  
Daphné Albert ◽  
Martin Filion
Keyword(s):  
Complete Genome ◽  
Burkholderia Cepacia ◽  
Gene Clusters ◽  
Antimicrobial Compounds ◽  
Bacterial Strains ◽  
Genome Sequences ◽  
Biosynthetic Gene Clusters ◽  
Content Type ◽  
Biocontrol Activity ◽  
Complex Display

Numerous bacterial strains from the Burkholderia cepacia complex display biocontrol activity. Here, we report the complete genome sequences of five Burkholderia strains isolated from soil. Biosynthetic gene clusters responsible for the production of antimicrobial compounds were found in the genome of these strains, which display biocontrol activity against various lettuce pathogens.

scholarly journals Draft Genome Assembly of the Entomopathogenic Bacterium Photorhabdus luminescens subsp. sonorensis Caborca

2019 ◽  
Vol 8 (36) ◽  
Author(s):  
Duy An Duong ◽  
Patricia Espinosa-Artiles ◽  
Rousel A. Orozco ◽  
István Molnár ◽  
S. Patricia Stock
Keyword(s):  
Secondary Metabolism ◽  
Genome Assembly ◽  
Draft Genome ◽  
Gene Clusters ◽  
Insect Species ◽  
Photorhabdus Luminescens ◽  
Putative Gene ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Wide Range

Photorhabdus luminescens subsp. sonorensis strain Caborca is an entomopathogenic bacterium with a dual lifestyle, namely, as a mutualist of the Heterorhabditis sonorensis nematode and a pathogen to a wide range of insect species. The genome assembly, in 231 contigs, is 5.2 Mbp long and includes 25 putative gene clusters for secondary metabolism.

scholarly journals The Genome Sequences of Three Paraburkholderia sp. Strains Isolated from Wood-Decay Fungi Reveal Them as Novel Species with Antimicrobial Biosynthetic Potential

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Gordon Webster ◽  
Alex J. Mullins ◽  
Aimee S. Bettridge ◽  
Cerith Jones ◽  
Edward Cunningham-Oakes ◽  
...  
Keyword(s):  
Plant Pathogens ◽  
Novel Species ◽  
Wood Decay ◽  
Gene Clusters ◽  
Antagonistic Activity ◽  
Biosynthetic Gene Clusters ◽  
Decay Fungi ◽  
Content Type ◽  
Wood Decay Fungi ◽  
Novel Taxa

Three strains of fungus-associated Burkholderiales bacteria with antagonistic activity against Gram-negative plant pathogens were genome sequenced to investigate their taxonomic placement and potential for antimicrobial specialized metabolite production. The selected strains were identified as novel taxa belonging to the genus Paraburkholderia and carry multiple biosynthetic gene clusters.

scholarly journals Draft Genome Sequences of Two Polycyclic Tetramate Macrolactam Producers, Streptomyces sp. Strains JV180 and SP18CM02

2020 ◽  
Vol 9 (50) ◽  
Author(s):  
Yunci Qi ◽  
Keshav K. Nepal ◽  
Jennifer Greif ◽  
Cole Martini ◽  
Chad Tomlinson ◽  
...  
Keyword(s):  
Secondary Metabolite ◽  
Draft Genome ◽  
Streptomyces Griseus ◽  
Gene Clusters ◽  
Gene Content ◽  
Biosynthetic Gene ◽  
Genome Sequences ◽  
Biosynthetic Gene Clusters ◽  
Content Type ◽  
Streptomyces Sp

ABSTRACT Here, we report the draft genome sequences of two related Streptomyces sp. strains, JV180 and SP18CM02. Despite their isolation from soils in Connecticut and Missouri (USA), respectively, they are strikingly similar in gene content. Both belong to the Streptomyces griseus clade and harbor several secondary metabolite biosynthetic gene clusters.

scholarly journals Draft Genome Sequences of Cloacibacterium normanense IMET F, a Microalgal Growth-Promoting Bacterium, and Aeromonas jandaei IMET J, a Microalgal Growth-Inhibiting Bacterium

2018 ◽  
Vol 6 (24) ◽  
Author(s):  
Shailendra Kumar Singh ◽  
Samuel R. Major ◽  
Haiyuan Cai ◽  
Feng Chen ◽  
Russell T. Hill ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Chlorella Vulgaris ◽  
Draft Genome ◽  
Gene Clusters ◽  
Whole Genome ◽  
Bacterial Isolates ◽  
Genome Sequences ◽  
Content Type ◽  
Growth Promoting ◽  
Growth Inhibiting

ABSTRACT We report here the whole-genome sequencing results of two bacterial isolates, Aeromonas jandaei IMET J and Cloacibacterium normanense IMET F, that inhibit (possibly due to denitrifying gene clusters) and promote (possibly due to an ammonification system), respectively, the growth of the microalgal strains Scenedesmus HTB1 and Chlorella vulgaris 1807.

scholarly journals Draft Genome Sequences of Streptomyces sp. Strains MH60 and 111WW2

2018 ◽  
Vol 6 (18) ◽  
pp. e00356-18
Author(s):  
Louise F. Thatcher ◽  
Cindy A. Myers ◽  
Cathryn A. O’Sullivan ◽  
Margaret M. Roper
Keyword(s):  
Draft Genome ◽  
Gene Clusters ◽  
Genome Sequences ◽  
Content Type ◽  
Streptomyces Sp ◽  
Plant Growth Promoting Activities ◽  
Plant Growth Promoting ◽  
Australian Wheat ◽  
Growth Promoting ◽  
Western Australian

ABSTRACT We report here the draft genome sequences, annotations, and predictions of secondary metabolite gene clusters of two endophytic Streptomyces species isolated from wheat plants growing in the Western Australian wheat belt. These strains, Streptomyces sp. strains MH60 and 111WW2, possess antifungal and/or plant growth-promoting activities.

scholarly journals Draft Genome Sequences of 12 Mycolicibacterium smegmatis Strains Resistant to Imidazo[1,2-b][1,2,4,5]Tetrazines

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Aleksey A. Vatlin ◽  
Kirill V. Shur ◽  
Valery N. Danilenko ◽  
Dmitry A. Maslov
Keyword(s):  
Draft Genome ◽  
Transcriptional Repressor ◽  
Antituberculosis Drug ◽  
Genome Sequences ◽  
Content Type ◽  
Drug Candidates

Here, we report 12 draft genome sequences of mutant Mycolicibacterium smegmatis strains resistant to imidazo[1,2-b][1,2,4,5]tetrazines, which are antituberculosis drug candidates. We have identified 7 different mutations in the MSMEG_1380 gene, which encodes the AcrR/TetR_N transcriptional repressor, which may activate efflux-mediated resistance.

scholarly journals Draft Genome Sequences of Three Flavobacterium psychrophilum Strains Isolated from Diseased Ayu (Plecoglossus altivelis altivelis) Caught at Three Sites in the Kagami River in Kochi, Japan

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Hazuki Yamashita ◽  
Takayuki Wada ◽  
Yusuke Kato ◽  
Takuji Ikeda ◽  
Masayuki Imajoh
Keyword(s):  
Draft Genome ◽  
Psychrophilic Bacterium ◽  
Genome Sequences ◽  
Plecoglossus Altivelis ◽  
Gram Negative ◽  
Content Type ◽  
Flavobacterium Psychrophilum ◽  
Skin Ulcers ◽  
The Family

Flavobacterium psychrophilum is a Gram-negative, psychrophilic bacterium within the family Flavobacteriaceae. Here, we report the draft genome sequences of three F. psychrophilum strains isolated from skin ulcers of diseased ayu caught by tomozuri angling at three sites in the Kagami River in Japan.

scholarly journals Draft Genome Sequences of Escherichia coli Strains FP2 and FP3, Isolated from the Canada Goose (Branta canadensis)

2018 ◽  
Vol 7 (9) ◽  
Author(s):  
Allison L. Denny ◽  
Susan E. Arruda
Keyword(s):  
Escherichia Coli ◽  
Draft Genome ◽  
Branta Canadensis ◽  
Canada Goose ◽  
Genome Sequences ◽  
Content Type

Draft genomes of two strains of Escherichia coli, FP2 and FP3, isolated from the feces of the Canada goose (Branta canadensis), were sequenced. Genome sizes were 5.26 Mb with a predicted G+C content of 50.54% (FP2) and 5.07 Mb with a predicted G+C content of 50.41% (FP3).

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