scholarly journals Draft Genome Sequence of Pandoravirus japonicus Isolated from the Sabaishi River, Niigata, Japan

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Nao Hosokawa ◽  
Haruna Takahashi ◽  
Keita Aoki ◽  
Masaharu Takemura
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
The Third

ABSTRACT “Pandoraviridae” is a proposed family of the phylum Nucleocytoviricota. Its features include an amphora-shaped capsid and the largest genome among all viruses. We report the isolation and genome sequencing of a new member of this family, named Pandoravirus japonicus, the third strain discovered in Japan.

scholarly journals Draft Genome Sequence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Strain from a Returned Traveler from Pakistan

2020 ◽  
Vol 9 (31) ◽  
Author(s):  
Samantha Hao ◽  
Tess Veuthey ◽  
Saharai Caldera ◽  
Paula Hayakawa Serpa ◽  
Barbara Haller ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Drug Resistant ◽  
Content Type ◽  
Salmonella Enterica Serovar Typhi ◽  
Extensively Drug Resistant

ABSTRACT We report a draft genome sequence of extensively drug-resistant (XDR) Salmonella enterica serotype Typhi isolated from a returned traveler from Pakistan who developed sepsis. Whole-genome sequencing revealed relatedness to a previously reported outbreak in Pakistan and identified the blaCTX-M-15 and qnrS resistance genes.

scholarly journals Draft Genome Sequence of a Mycobacterium porcinum Strain Isolated from a Pet Cat with Atypical Mycobacterial Panniculitis

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Anthony Mannion ◽  
Tina McCollester ◽  
Alexander Sheh ◽  
Zeli Shen ◽  
Hilda Holcombe ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Fast Growing

A fast-growing Mycobacterium species was cultured from draining, purulent lesions on the caudal abdomen of a 12-year-old male domestic long-haired cat. Whole-genome sequencing identified the organism as Mycobacterium porcinum.

scholarly journals Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Chien-Hsun Huang ◽  
Jong-Shian Liou ◽  
Chun-Lin Wang ◽  
Lina Huang
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fecal Sample ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Human Feces ◽  
Content Type ◽  
Old Adult

ABSTRACT Here, we report the draft genome sequence of a Clostridium sp. strain isolated from a fecal sample of a 34-year-old adult male in Taiwan. This strain may represent a new bacterium, as suggested by a comparison based on whole-genome sequencing. The genome assembly comprised 6,089,737 bp, with a 45.63% G+C content.

scholarly journals Draft Genome Sequence of Weissella viridescens UCO-SMC3, Isolated from the Slime of Helix aspersa Müller Snails

2019 ◽  
Vol 8 (11) ◽  
Author(s):  
Apolinaria Garcia-Cancino ◽  
Leonardo Albarracin ◽  
Marcela Espinoza-Monje ◽  
Jorge Campos-Martin ◽  
Valeria Garcia-Castillo ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Helix Aspersa ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type

This report describes the draft genome sequence of Weissella viridescens UCO-SMC3, isolated from Helix aspersa Müller slime. The reads were generated by a whole-genome sequencing (WGS) strategy on an Illumina MiSeq sequencer and were assembled into contigs with a total estimated size of 1,612,814 bp.

scholarly journals Draft Genome Sequencing of the Highly Halotolerant and Allopolyploid Yeast Zygosaccharomyces rouxii NBRC 1876

2017 ◽  
Vol 5 (7) ◽  
Author(s):  
Atsushi Sato ◽  
Kenichiro Matsushima ◽  
Kenshiro Oshima ◽  
Masahira Hattori ◽  
Yasuji Koyama
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Food Production ◽  
Draft Genome ◽  
Soy Sauce ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Zygosaccharomyces Rouxii ◽  
High Concentrations ◽  
Draft Genome Sequencing

ABSTRACT The highly halotolerant and allopolyploid yeast Zygosaccharomyces rouxii is industrially used for the food production in high concentrations of salt, such as brewing soy sauce and miso paste. Here, we report the draft genome sequence of Z. rouxii NBRC 1876 isolated from miso paste.

scholarly journals Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Koki Yoshida ◽  
Ruixuan Zhang ◽  
Kimberly G. Garcia ◽  
Hisashi Endo ◽  
Yasuhiro Gotoh ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Acanthamoeba Castellanii ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Double Stranded Dna ◽  
Freshwater Sample ◽  
Dsdna Viruses

ABSTRACT “Medusaviridae” is a proposed family of large double-stranded DNA (dsDNA) viruses so far represented by a sole virus isolated from a hot spring. In the present study, we report the isolation and genome sequencing of a second member of this family, medusavirus stheno, discovered from a freshwater sample with an Acanthamoeba castellanii coculture.

scholarly journals Draft Genome Sequence of Herminiimonas contaminans Strain CCM 7991T, a Biopharmaceutical Contaminant

2021 ◽  
Vol 10 (7) ◽  
Author(s):  
Luis Johnson Kangale ◽  
Rita Zgheib ◽  
Eric Ghigo ◽  
Didier Raoult ◽  
Pierre-Edouard Fournier
Keyword(s):  
Production Process ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Bacterial Species ◽  
Draft Genome ◽  
Noncoding Rnas ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Biopharmaceutical Production ◽  
Draft Genome Sequencing

ABSTRACT Herminiimonas contaminans was described as a new bacterial species, a contaminant isolated from a biopharmaceutical production process in Sweden. Since the genome sequence was not available, we performed draft genome sequencing. The genome of strain CCM 7991T (=CCUG 53591T = DSM 28178T = Marseille-Q4544T) was 4,038,814 bp long, with a G+C content of 53.9%; a total of 3,860 genes were identified, along with 3 rRNAs, 44 tRNAs, and 4 noncoding RNAs (ncRNAs).

scholarly journals Draft Genome Sequence of Leptospira yasudae Strain BJ3, Isolated from the Soil of an Ex Situ Wild Animal Conservation Area

2021 ◽  
Vol 10 (39) ◽  
Author(s):  
Nadia Aqilla Shamsusah ◽  
Hani Kartini Agustar ◽  
Fairuz Amran ◽  
Rozita Hod
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Wild Animal ◽  
Ex Situ ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Animal Conservation ◽  
Conservation Area ◽  
Content Type

Previously, a novel Leptospira strain (BJ3) was isolated from the soil of an ex situ wild animal conservation area in Perak, Malaysia. Molecular identification via whole-genome sequencing confirmed that the strain was Leptospira yasudae . Here, we report the draft genome sequence of L. yasudae strain BJ3.

scholarly journals Draft Genome Sequence of the Type Strain Bacillus subtilis subsp. subtilis DSM10

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Lars Lilge ◽  
Robert Hertel ◽  
Kambiz Morabbi Heravi ◽  
Marius Henkel ◽  
Fabian M. Commichau ◽  
...  
Keyword(s):  
Bacillus Subtilis ◽  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Subtilis Subsp

ABSTRACT The Bacillus subtilis subsp. subtilis type strain DSM10 has been used as a reference in various studies. However, detailed information about the genome has not been available. Therefore, whole-genome sequencing was performed, and the sequence was compared with that of the related B. subtilis strain NCIB3610.

scholarly journals Draft Genome Sequence of Coralloluteibacterium stylophorae LMG 29479 T

2021 ◽  
Vol 10 (27) ◽  
Author(s):  
Andrey V. Karlyshev ◽  
Ekaterina B. Kudryashova ◽  
Elena V. Ariskina ◽  
Ava P. Conroy ◽  
Elena Y. Abidueva
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Sequencing Data ◽  
Content Type

Here, we report a draft genome sequence of the strain Coralloluteibacterium stylophorae LMG 29479 T acquired from the Belgian Coordinated Collections of Microorganisms. The genus Coralloluteibacterium currently includes only one species with a validly published name. These genome sequencing data are important for the phylogeny of the Lysobacteraceae family.

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