scholarly journals Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
Koki Yoshida ◽  
Ruixuan Zhang ◽  
Kimberly G. Garcia ◽  
Hisashi Endo ◽  
Yasuhiro Gotoh ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Acanthamoeba Castellanii ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Double Stranded Dna ◽  
Freshwater Sample ◽  
Dsdna Viruses

ABSTRACT “Medusaviridae” is a proposed family of large double-stranded DNA (dsDNA) viruses so far represented by a sole virus isolated from a hot spring. In the present study, we report the isolation and genome sequencing of a second member of this family, medusavirus stheno, discovered from a freshwater sample with an Acanthamoeba castellanii coculture.

scholarly journals Draft Genome Sequence of Medusavirus stheno, a New Member of "Medusaviridae" Isolated from the Tatakai River of Uji, Japan

2020 ◽  
Author(s):  
Koki Yoshida ◽  
Ruixuan Zhang ◽  
Kimberly Garcia ◽  
Hisashi Endo ◽  
Yasuhiro Gotoh ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Acanthamoeba Castellanii ◽  
Draft Genome Sequence ◽  
Dna Viruses ◽  
Freshwater Sample

"Medusaviridae" is a proposed family of large DNA viruses so far represented by a sole virus isolated from a hot spring. In the present study, we report the isolation and genome sequencing of a new member of this family, medusavirus stheno, discovered from a freshwater sample with Acanthamoeba castellanii coculture.

scholarly journals Draft Genome Sequence of Thermophilic Halotolerant Aeribacillus pallidus TD1, Isolated from Tao Dam Hot Spring, Thailand

2019 ◽  
Vol 8 (17) ◽  
Author(s):  
Wariya Yamprayoonswat ◽  
Satapanawat Sittihan ◽  
Watthanachai Jumpathong ◽  
Montri Yasawong
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
Naphthalene Dioxygenase ◽  
Content Type ◽  
Naphthalene Degradation ◽  
Key Enzyme

Aeribacillus pallidus TD1 is a thermophilic bacterium isolated from a hot spring in Thailand. The genome sequence of A. pallidus TD1 contains a gene-encoded naphthalene dioxygenase, which is a key enzyme for naphthalene degradation.

scholarly journals Draft Genome Sequence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Strain from a Returned Traveler from Pakistan

2020 ◽  
Vol 9 (31) ◽  
Author(s):  
Samantha Hao ◽  
Tess Veuthey ◽  
Saharai Caldera ◽  
Paula Hayakawa Serpa ◽  
Barbara Haller ◽  
...  
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Salmonella Enterica ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Drug Resistant ◽  
Content Type ◽  
Salmonella Enterica Serovar Typhi ◽  
Extensively Drug Resistant

ABSTRACT We report a draft genome sequence of extensively drug-resistant (XDR) Salmonella enterica serotype Typhi isolated from a returned traveler from Pakistan who developed sepsis. Whole-genome sequencing revealed relatedness to a previously reported outbreak in Pakistan and identified the blaCTX-M-15 and qnrS resistance genes.

scholarly journals Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring

2018 ◽  
Vol 6 (11) ◽  
Author(s):  
Anna-Louise Reysenbach ◽  
John A. Donaho ◽  
John F. Kelley ◽  
Emily St. John ◽  
Christina Turner ◽  
...  
Keyword(s):  
New Zealand ◽  
Carbohydrate Metabolism ◽  
Genome Sequence ◽  
Hot Spring ◽  
Enrichment Culture ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Complex Carbohydrate ◽  
Content Type ◽  
Geothermal Spring

ABSTRACT A draft genome of a novel Dictyoglomus sp., NZ13-RE01, was obtained from a New Zealand hot spring enrichment culture. The 1,927,012-bp genome is similar in both size and G+C content to other Dictyoglomus spp. Like its relatives, Dictyoglomus sp. NZ13-RE01 encodes many genes involved in complex carbohydrate metabolism.

scholarly journals Draft Genome Sequence of a Mycobacterium porcinum Strain Isolated from a Pet Cat with Atypical Mycobacterial Panniculitis

2020 ◽  
Vol 9 (11) ◽  
Author(s):  
Anthony Mannion ◽  
Tina McCollester ◽  
Alexander Sheh ◽  
Zeli Shen ◽  
Hilda Holcombe ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Fast Growing

A fast-growing Mycobacterium species was cultured from draining, purulent lesions on the caudal abdomen of a 12-year-old male domestic long-haired cat. Whole-genome sequencing identified the organism as Mycobacterium porcinum.

scholarly journals Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Chien-Hsun Huang ◽  
Jong-Shian Liou ◽  
Chun-Lin Wang ◽  
Lina Huang
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fecal Sample ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Human Feces ◽  
Content Type ◽  
Old Adult

ABSTRACT Here, we report the draft genome sequence of a Clostridium sp. strain isolated from a fecal sample of a 34-year-old adult male in Taiwan. This strain may represent a new bacterium, as suggested by a comparison based on whole-genome sequencing. The genome assembly comprised 6,089,737 bp, with a 45.63% G+C content.

scholarly journals Draft Genome Sequence of Pannonibacter indicus Strain HT23T (DSM 23407T), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Saumya Bandyopadhyay ◽  
William B. Whitman ◽  
Subrata K. Das
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Arsenate Resistance

ABSTRACT Pannonibacter indicus strain HT23T, a highly arsenate-tolerant bacterium, was isolated from a tropical hot spring. The estimated genome is 4.2 Mb with 3,818 protein-coding sequences containing putative genes, some of which are involved in arsenate resistance.

scholarly journals Draft Genome Sequence of Pandoravirus japonicus Isolated from the Sabaishi River, Niigata, Japan

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Nao Hosokawa ◽  
Haruna Takahashi ◽  
Keita Aoki ◽  
Masaharu Takemura
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
The Third

ABSTRACT “Pandoraviridae” is a proposed family of the phylum Nucleocytoviricota. Its features include an amphora-shaped capsid and the largest genome among all viruses. We report the isolation and genome sequencing of a new member of this family, named Pandoravirus japonicus, the third strain discovered in Japan.

scholarly journals Draft Genome Sequence of Sicyoidochytrium minutum DNA Virus Strain 001

2021 ◽  
Vol 10 (23) ◽  
Author(s):  
Yumi Murakoshi ◽  
Takayuki Shimeki ◽  
Daiske Honda ◽  
Yoshitake Takao
Keyword(s):  
Genome Sequence ◽  
Virus Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Dsdna Virus ◽  
Dna Virus ◽  
Coding Sequences ◽  
Content Type ◽  
Double Stranded Dna

Sicyoidochytrium minutum DNA virus strain 001 (SmDNAV 001) is a double-stranded DNA (dsDNA) virus that infects the marine fungoid protist Sicyoidochytrium minutum . We report the draft genome sequence of SmDNAV 001. The 236,345-bp genome contained 358 coding sequences (CDSs) and three tRNA-coding sequences.

scholarly journals Draft Genome Sequence of Aeromonas lusitana sp. nov. Strain DSM 24905T, Isolated from a Hot Spring in Vila-Real, Portugal

2018 ◽  
Vol 6 (15) ◽  
pp. e00226-18
Author(s):  
S. M. Colston ◽  
A. Navarro ◽  
A. J. Martinez-Murcia ◽  
J. Graf
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Novel Species ◽  
Animal Health ◽  
Draft Genome ◽  
Water Sources ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT Aeromonas lusitana sp. nov. is an isolate derived from a study aimed at characterizing Aeromonas spp. from water sources used for recreation and agricultural purposes and assessing the implications these organisms have for human and animal health. We present here the 4.52-Mbp draft genome sequence of this novel species.

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