scholarly journals Draft Genome Sequences of Bacillus sp. Strains RM1(2019), RM2(2019), RM9(2019), RM11(2019), and RM15(2019), Isolated from Temperate Soils in the Hudson River Valley of New York

2019 ◽  
Vol 8 (50) ◽  
Author(s):  
Rachael A. Mendoza ◽  
Swapan S. Jain ◽  
Gabriel G. Perron

We report the draft genome sequences of five novel Bacillus strains isolated from temperate soils in Annandale-on-Hudson, NY. Strains RM1(2019), RM9(2019), and RM15(2019) were identified as Bacillus toyonensis, while RM11(2019) was identified as Bacillus thuringiensis. The draft genome of strain RM2(2019) was unclassified and likely represents a new species.

2019 ◽  
Vol 8 (12) ◽  
Author(s):  
Lu Zhou ◽  
Chunxu Song ◽  
Anne de Jong ◽  
Oscar P. Kuipers

In order to investigate the underlying interaction mechanisms between plants and Gram-positive bacteria, 10 Paenibacillus and Bacillus strains were isolated from healthy tomato rhizosphere and plant tissues.


2020 ◽  
Vol 9 (26) ◽  
Author(s):  
Elinne Becket ◽  
Keneshia O. Johnson ◽  
Camille J. Burke ◽  
Jasmin J. Clark ◽  
Marcus J. S. Cohen ◽  
...  

ABSTRACT We report the draft genome sequences of Bacillus glennii V44-8, Bacillus saganii V47-23a, and Bacillus sp. strain V59.32b, isolated from the Viking spacecraft assembly cleanroom, and Bacillus sp. strain MER_TA_151 and Paenibacillus sp. strain MER_111, isolated from the Mars Exploration Rover (MER) assembly cleanroom.


2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Aleksey A. Vatlin ◽  
Kirill V. Shur ◽  
Valery N. Danilenko ◽  
Dmitry A. Maslov

Here, we report 12 draft genome sequences of mutant Mycolicibacterium smegmatis strains resistant to imidazo[1,2-b][1,2,4,5]tetrazines, which are antituberculosis drug candidates. We have identified 7 different mutations in the MSMEG_1380 gene, which encodes the AcrR/TetR_N transcriptional repressor, which may activate efflux-mediated resistance.


2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Hazuki Yamashita ◽  
Takayuki Wada ◽  
Yusuke Kato ◽  
Takuji Ikeda ◽  
Masayuki Imajoh

Flavobacterium psychrophilum is a Gram-negative, psychrophilic bacterium within the family Flavobacteriaceae. Here, we report the draft genome sequences of three F. psychrophilum strains isolated from skin ulcers of diseased ayu caught by tomozuri angling at three sites in the Kagami River in Japan.


2018 ◽  
Vol 7 (9) ◽  
Author(s):  
Allison L. Denny ◽  
Susan E. Arruda

Draft genomes of two strains of Escherichia coli, FP2 and FP3, isolated from the feces of the Canada goose (Branta canadensis), were sequenced. Genome sizes were 5.26 Mb with a predicted G+C content of 50.54% (FP2) and 5.07 Mb with a predicted G+C content of 50.41% (FP3).


2017 ◽  
Vol 5 (9) ◽  
Author(s):  
Norazah Ahmad ◽  
Shirley Yi Fen Hii ◽  
Mohd Khairul Nizam Mohd Khalid ◽  
Muhammad Adib Abd Wahab ◽  
Rohaidah Hashim ◽  
...  

ABSTRACT Corynebacterium diphtheriae has caused multiple isolated diphtheria cases in Malaysia over the years. Here, we report the first draft genome sequences of 15 Malaysia C. diphtheriae clinical isolates collected from the years 1981 to 2016.


2017 ◽  
Vol 5 (39) ◽  
Author(s):  
Paul A. Beare ◽  
Brendan M. Jeffrey ◽  
Craig A. Martens ◽  
Talima Pearson ◽  
Robert A. Heinzen

ABSTRACT Here, we report draft genome sequences of historical strains of Coxiella burnetii derived from cow’s milk and the placenta of a goat that had aborted. The California and Ohio milk strains display a different sequence type than do contemporary milk strains.


2018 ◽  
Vol 6 (15) ◽  
pp. e00295-18
Author(s):  
Alexander Fortuna ◽  
Ricardo Ramnarine ◽  
Aimin Li ◽  
Nahuel Fittipaldi ◽  
Christine Frantz ◽  
...  

ABSTRACT Legionella pneumophila outbreak investigations require the development of reliable typing methods to better understand the genetic relationships of the isolates involved. Here, we report the draft genome sequences of four clinical Legionella pneumophila isolates obtained between 2000 and 2012 in Ontario, Canada.


2017 ◽  
Vol 5 (26) ◽  
Author(s):  
Xiaoqin Wu ◽  
Adam M. Deutschbauer ◽  
Alexey E. Kazakov ◽  
Kelly M. Wetmore ◽  
Bryson A. Cwick ◽  
...  

ABSTRACT We present here the draft genome sequences of two Janthinobacterium lividum strains, GW456P and GW458P, isolated from groundwater samples collected from a background site at the Oak Ridge Field Research Center. Production of a purple pigment by these two strains was observed when grown on diluted (1/10) LB agar plates.


2021 ◽  
Vol ahead-of-print (ahead-of-print) ◽  
Author(s):  
Carlos J.L. Balsas

Purpose Societal problems have impacted the northeast of the USA for various generations. This paper aims to analyse various sustainability aspects in the Hudson River watershed of New York by highlighting a temporal progression from environmental sustainability at the watershed level in the 1970s to growing concerns with more localized cross-border social and cultural sustainability in recent decades. We discuss an engagement with the Rapp Road Historic District and a documentary screening series as potential ways to eliminate racism and embrace diversity. Design/methodology/approach The research was based on fieldwork and classroom teaching conducted mostly since summer 2014. It included mixed methods combining document analysis and reviews with the examination of case studies, and the assessment of public policy priorities. Findings Formal training has to be combined with a substantial dose of realism, humility and motivation to recognize that what the authors teach and research in the community matters. Future learning experiences within a place-based education paradigm could include: Having students help devise urban rehabilitation strategies whilst suggesting integrative measures with the surrounding built and natural environments; students could also help improve public spaces in the neighbourhood; and finally, they could also help to strengthen the cultural identity of the district by augmenting urban design features endogenous to the African American community. Practical implications Opportunities could be further augmented with service-learning projects and programmes, internships and even full-time jobs for recent graduates in local community development organizations. Social implications The study served to raise the community’s awareness of its own natural, ecological and human assets, and to create place-based real-world opportunities for students and faculty in environmental and cultural sustainability studies. Originality/value Environmental sustainability is discussed with the creation of the Hudson River Valley National Heritage Area, whilst the public engagement with the Rapp Road Historic Association in the Capital Region of upstate New York, the identification of an emerging creative cluster in the Berkshires-Hudson region, and a documentary and discussion series on striving for diverse cities serve to demonstrate current concerns with social and cultural sustainability.


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